Strain Fitness in Pantoea sp. MT58 around IAI47_16550

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,502,447	+		IAI47_16545	0.26	-1.4
3,502,469	+		IAI47_16545	0.28	-1.2
3,502,469	+		IAI47_16545	0.28	-1.6
3,502,470	-		IAI47_16545	0.28	-0.3
3,502,473	+		IAI47_16545	0.28	-1.4
3,502,491	-		IAI47_16545	0.30	+1.2
3,502,599	-		IAI47_16545	0.38	-1.1
3,502,666	-		IAI47_16545	0.43	-0.6
3,502,725	+		IAI47_16545	0.47	-0.4
3,502,728	+		IAI47_16545	0.47	-0.6
3,502,729	-		IAI47_16545	0.47	-2.0
3,502,733	+		IAI47_16545	0.48	-1.1
3,502,736	+		IAI47_16545	0.48	-0.8
3,502,775	+		IAI47_16545	0.51	-1.6
3,502,805	+		IAI47_16545	0.53	+0.9
3,502,806	-		IAI47_16545	0.53	+0.8
3,502,842	-		IAI47_16545	0.56	-1.1
3,502,844	-		IAI47_16545	0.56	-2.2
3,502,865	+		IAI47_16545	0.57	-0.6
3,502,866	-		IAI47_16545	0.57	-3.0
3,503,021	+		IAI47_16545	0.69	-0.8
3,503,025	-		IAI47_16545	0.69	-1.4
3,503,064	+		IAI47_16545	0.72	-0.9
3,503,064	+		IAI47_16545	0.72	+1.2
3,503,065	-		IAI47_16545	0.72	-1.5
3,503,065	-		IAI47_16545	0.72	-1.5
3,503,067	+		IAI47_16545	0.72	-1.4
3,503,067	+		IAI47_16545	0.72	-1.4
3,503,068	-		IAI47_16545	0.72	+0.6
3,503,068	-		IAI47_16545	0.72	+0.2
3,503,115	-		IAI47_16545	0.76	-2.0
3,503,115	-		IAI47_16545	0.76	-0.1
3,503,116	+		IAI47_16545	0.76	-0.8
3,503,167	+		IAI47_16545	0.80	-0.4
3,503,167	+		IAI47_16545	0.80	+3.2
3,503,167	+		IAI47_16545	0.80	+0.2
3,503,168	-		IAI47_16545	0.80	+1.7
3,503,168	-		IAI47_16545	0.80	-0.6
3,503,168	-		IAI47_16545	0.80	-2.3
3,503,168	-		IAI47_16545	0.80	-1.2
3,503,270	+		IAI47_16545	0.87	-0.6
3,503,270	+		IAI47_16545	0.87	-1.2
3,503,271	-		IAI47_16545	0.87	-1.4
3,503,271	-		IAI47_16545	0.87	+0.2
3,503,272	+		IAI47_16545	0.87	-2.0
3,503,272	+		IAI47_16545	0.87	-1.9
3,503,272	+		IAI47_16545	0.87	-2.4
3,503,272	+		IAI47_16545	0.87	-1.2
3,503,272	+		IAI47_16545	0.87	-2.4
3,503,273	-		IAI47_16545	0.88	-1.0
3,503,273	-		IAI47_16545	0.88	-0.4
3,503,304	-		IAI47_16545	0.90	-1.0
3,503,321	+				-2.1
3,503,322	-				-0.0
3,503,322	-				-2.0
3,503,323	+				-1.1
3,503,324	-				+1.2
3,503,324	-				-1.2
3,503,324	-				+2.8
3,503,324	-				-2.3
3,503,346	-				+0.1
3,503,379	+				-1.4
3,503,379	+				-1.8
3,503,380	-				+0.2
3,503,380	-				+0.4
3,503,380	-				+0.0
3,503,380	-				+1.2
3,503,388	+				-0.1
3,503,389	-				+0.6
3,503,389	-				-1.3
3,503,578	+				-0.3
3,503,617	+		IAI47_16550	0.11	+1.1
3,503,617	+		IAI47_16550	0.11	+1.2
3,503,617	+		IAI47_16550	0.11	-2.2
3,503,617	+		IAI47_16550	0.11	+0.0
3,503,618	-		IAI47_16550	0.11	-0.6
3,503,636	-		IAI47_16550	0.12	+0.7
3,503,717	-		IAI47_16550	0.18	-1.8
3,503,741	+		IAI47_16550	0.19	+1.5
3,503,762	-		IAI47_16550	0.20	-0.4
3,503,762	-		IAI47_16550	0.20	-0.3
3,503,792	+		IAI47_16550	0.22	+0.2
3,503,793	-		IAI47_16550	0.22	+1.7
3,503,793	-		IAI47_16550	0.22	-0.1
3,503,816	+		IAI47_16550	0.24	-0.3
3,503,816	+		IAI47_16550	0.24	-1.4
3,503,816	+		IAI47_16550	0.24	-1.3
3,503,817	-		IAI47_16550	0.24	-0.3
3,503,817	-		IAI47_16550	0.24	+0.9
3,503,817	-		IAI47_16550	0.24	+0.5
3,503,817	-		IAI47_16550	0.24	+0.4
3,503,834	+		IAI47_16550	0.25	-1.8
3,503,834	+		IAI47_16550	0.25	+0.3
3,503,879	-		IAI47_16550	0.28	-0.4
3,503,879	-		IAI47_16550	0.28	-0.0
3,503,895	+		IAI47_16550	0.29	-1.5
3,503,895	+		IAI47_16550	0.29	-1.3
3,503,895	+		IAI47_16550	0.29	-0.1
3,503,896	-		IAI47_16550	0.29	-1.0
3,503,896	-		IAI47_16550	0.29	-0.8
3,503,923	+		IAI47_16550	0.31	+0.2
3,503,924	-		IAI47_16550	0.31	-0.6
3,503,992	-		IAI47_16550	0.35	+1.1
3,504,019	+		IAI47_16550	0.37	-2.1
3,504,019	+		IAI47_16550	0.37	-3.2
3,504,020	-		IAI47_16550	0.37	-1.4
3,504,020	-		IAI47_16550	0.37	+0.7
3,504,022	+		IAI47_16550	0.37	-1.0
3,504,022	+		IAI47_16550	0.37	-1.8
3,504,022	+		IAI47_16550	0.37	-2.1
3,504,023	-		IAI47_16550	0.37	-0.8
3,504,023	-		IAI47_16550	0.37	-2.3
3,504,023	-		IAI47_16550	0.37	-0.6
3,504,023	-		IAI47_16550	0.37	-1.5
3,504,023	-		IAI47_16550	0.37	-0.1
3,504,023	-		IAI47_16550	0.37	-1.1
3,504,023	-		IAI47_16550	0.37	-0.6
3,504,023	-		IAI47_16550	0.37	+1.6
3,504,026	+		IAI47_16550	0.37	-0.8
3,504,026	+		IAI47_16550	0.37	-2.5
3,504,026	+		IAI47_16550	0.37	-2.1
3,504,026	+		IAI47_16550	0.37	-0.0
3,504,026	+		IAI47_16550	0.37	-2.1
3,504,026	+		IAI47_16550	0.37	-0.1
3,504,026	+		IAI47_16550	0.37	+0.5
3,504,026	+		IAI47_16550	0.37	-1.4
3,504,026	+		IAI47_16550	0.37	-1.2
3,504,026	+		IAI47_16550	0.37	-0.9
3,504,027	-		IAI47_16550	0.37	-0.5
3,504,027	-		IAI47_16550	0.37	+1.2
3,504,027	-		IAI47_16550	0.37	+0.4
3,504,027	-		IAI47_16550	0.37	-0.3
3,504,027	-		IAI47_16550	0.37	+0.1
3,504,027	-		IAI47_16550	0.37	+1.7
3,504,027	-		IAI47_16550	0.37	-0.2
3,504,027	-		IAI47_16550	0.37	-0.1
3,504,027	-		IAI47_16550	0.37	+0.2
3,504,027	-		IAI47_16550	0.37	+0.6
3,504,027	-		IAI47_16550	0.37	+0.7
3,504,027	-		IAI47_16550	0.37	-0.7
3,504,027	-		IAI47_16550	0.37	-2.0
3,504,037	+		IAI47_16550	0.38	+1.4
3,504,037	+		IAI47_16550	0.38	-2.1
3,504,037	+		IAI47_16550	0.38	-0.4
3,504,037	+		IAI47_16550	0.38	-0.8
3,504,037	+		IAI47_16550	0.38	+0.4
3,504,038	-		IAI47_16550	0.38	-0.6
3,504,038	-		IAI47_16550	0.38	+2.0
3,504,038	-		IAI47_16550	0.38	+0.0
3,504,038	-		IAI47_16550	0.38	+1.2
3,504,038	-		IAI47_16550	0.38	+0.2
3,504,038	-		IAI47_16550	0.38	-0.1
3,504,038	-		IAI47_16550	0.38	-0.6
3,504,101	+		IAI47_16550	0.42	+0.0
3,504,101	+		IAI47_16550	0.42	-1.4
3,504,101	+		IAI47_16550	0.42	+0.8
3,504,101	+		IAI47_16550	0.42	-0.9
3,504,102	-		IAI47_16550	0.42	-1.0
3,504,102	-		IAI47_16550	0.42	-1.8
3,504,102	-		IAI47_16550	0.42	+0.0
3,504,102	-		IAI47_16550	0.42	+0.6
3,504,143	-		IAI47_16550	0.44	+2.1
3,504,152	-		IAI47_16550	0.45	-0.4
3,504,152	-		IAI47_16550	0.45	-0.5
3,504,152	-		IAI47_16550	0.45	+0.7
3,504,191	-		IAI47_16550	0.47	-0.9
3,504,326	+		IAI47_16550	0.56	+0.1
3,504,326	+		IAI47_16550	0.56	+0.2
3,504,326	+		IAI47_16550	0.56	-0.8
3,504,326	+		IAI47_16550	0.56	-1.1
3,504,326	+		IAI47_16550	0.56	-0.3
3,504,326	+		IAI47_16550	0.56	+0.3
3,504,327	-		IAI47_16550	0.56	+3.2
3,504,327	-		IAI47_16550	0.56	+0.2
3,504,327	-		IAI47_16550	0.56	-0.7
3,504,327	-		IAI47_16550	0.56	+0.2
3,504,327	-		IAI47_16550	0.56	+0.2
3,504,327	-		IAI47_16550	0.56	+0.1
3,504,422	-		IAI47_16550	0.62	-0.5
3,504,422	-		IAI47_16550	0.62	-0.1
3,504,497	-		IAI47_16550	0.67	-0.3
3,504,515	+		IAI47_16550	0.68	+0.2
3,504,516	-		IAI47_16550	0.68	+0.1
3,504,551	-		IAI47_16550	0.70	+0.0
3,504,551	-		IAI47_16550	0.70	-0.5
3,504,551	-		IAI47_16550	0.70	+0.3
3,504,582	+		IAI47_16550	0.72	-2.4
3,504,582	+		IAI47_16550	0.72	+1.2
3,504,582	+		IAI47_16550	0.72	-0.9
3,504,582	+		IAI47_16550	0.72	-1.5
3,504,582	+		IAI47_16550	0.72	-2.4
3,504,583	-		IAI47_16550	0.72	-0.4
3,504,583	-		IAI47_16550	0.72	-2.9
3,504,636	+		IAI47_16550	0.75	-0.1
3,504,636	+		IAI47_16550	0.75	+4.1
3,504,636	+		IAI47_16550	0.75	-0.8
3,504,636	+		IAI47_16550	0.75	-0.8
3,504,636	+		IAI47_16550	0.75	-0.4
3,504,636	+		IAI47_16550	0.75	+0.2
3,504,636	+		IAI47_16550	0.75	-1.3
3,504,636	+		IAI47_16550	0.75	+0.6
3,504,636	+		IAI47_16550	0.75	-1.6
3,504,636	+		IAI47_16550	0.75	-0.9
3,504,636	+		IAI47_16550	0.75	+0.2
3,504,636	+		IAI47_16550	0.75	+0.4
3,504,636	+		IAI47_16550	0.75	-1.4
3,504,636	+		IAI47_16550	0.75	-2.8
3,504,637	-		IAI47_16550	0.75	-0.5
3,504,637	-		IAI47_16550	0.75	+1.2
3,504,637	-		IAI47_16550	0.75	-1.3
3,504,637	-		IAI47_16550	0.75	-2.2
3,504,637	-		IAI47_16550	0.75	+0.3
3,504,637	-		IAI47_16550	0.75	-0.4
3,504,637	-		IAI47_16550	0.75	+0.8
3,504,637	-		IAI47_16550	0.75	-0.0
3,504,637	-		IAI47_16550	0.75	+1.6
3,504,637	-		IAI47_16550	0.75	-0.6
3,504,637	-		IAI47_16550	0.75	+1.7
3,504,637	-		IAI47_16550	0.75	-1.6
3,504,637	-		IAI47_16550	0.75	-0.5
3,504,640	+		IAI47_16550	0.76	-0.4
3,504,640	+		IAI47_16550	0.76	+0.4
3,504,640	+		IAI47_16550	0.76	+1.5
3,504,640	+		IAI47_16550	0.76	-1.2
3,504,641	-		IAI47_16550	0.76	+0.5
3,504,679	+		IAI47_16550	0.78	+2.0
3,504,680	-		IAI47_16550	0.78	+0.1
3,504,680	-		IAI47_16550	0.78	+0.3
3,504,681	+		IAI47_16550	0.78	-0.8
3,504,681	+		IAI47_16550	0.78	-0.7
3,504,681	+		IAI47_16550	0.78	+0.4
3,504,681	+		IAI47_16550	0.78	-2.4
3,504,681	+		IAI47_16550	0.78	+0.9
3,504,681	+		IAI47_16550	0.78	-2.5
3,504,681	+		IAI47_16550	0.78	-1.1
3,504,682	-		IAI47_16550	0.78	-1.8
3,504,682	-		IAI47_16550	0.78	-0.5
3,504,682	-		IAI47_16550	0.78	+2.3
3,504,682	-		IAI47_16550	0.78	-0.3
3,504,682	-		IAI47_16550	0.78	-2.4
3,504,700	+		IAI47_16550	0.79	-0.7
3,504,700	+		IAI47_16550	0.79	-0.8
3,504,762	-		IAI47_16550	0.83	-0.8
3,504,762	-		IAI47_16550	0.83	-1.0
3,504,812	-		IAI47_16550	0.86	-1.4
3,504,851	+		IAI47_16550	0.89	-3.2
3,504,852	-		IAI47_16550	0.89	+0.2
3,504,852	-		IAI47_16550	0.89	+0.9
3,504,852	-		IAI47_16550	0.89	-0.4
3,504,882	+				-0.4
3,504,882	+				-1.0
3,504,883	-				-0.8
3,504,908	-				+0.0
3,504,948	+				+0.5
3,504,949	-				-1.5
3,504,957	+				-0.9
3,504,958	-				+2.1
3,505,040	-				-0.8
3,505,044	-				+2.0
3,505,094	-				-0.1
3,505,101	+				-0.4
3,505,123	-				+3.8
3,505,135	+				-2.3
3,505,136	-				+0.7
3,505,136	-				+0.2
3,505,136	-				+2.9
3,505,279	+				-0.4
3,505,280	-				+2.0
3,505,313	+				-0.9
3,505,313	+				-0.8
3,505,314	-				-0.3
3,505,314	-				+0.1
3,505,314	-				-1.0
3,505,314	-				-0.1
3,505,355	+				-1.4
3,505,385	-				-1.7
3,505,408	+				-1.1
3,505,409	-				-1.4
3,505,409	-				+4.1
3,505,507	+		IAI47_16555	0.12	+0.1
3,505,507	+		IAI47_16555	0.12	+0.9
3,505,508	-		IAI47_16555	0.12	+3.2
3,505,525	+		IAI47_16555	0.12	-1.7
3,505,569	-		IAI47_16555	0.13	+1.5
3,505,569	-		IAI47_16555	0.13	-0.7
3,505,611	+		IAI47_16555	0.15	-1.6
3,505,612	-		IAI47_16555	0.15	+2.0
3,505,612	-		IAI47_16555	0.15	-2.0
3,505,612	-		IAI47_16555	0.15	-0.1
3,505,621	-		IAI47_16555	0.15	-0.5
3,505,630	+		IAI47_16555	0.15	-2.1
3,505,630	+		IAI47_16555	0.15	-1.8
3,505,631	-		IAI47_16555	0.15	-1.4
3,505,631	-		IAI47_16555	0.15	+1.2
3,505,631	-		IAI47_16555	0.15	-1.1
3,505,631	-		IAI47_16555	0.15	+1.8
3,505,654	+		IAI47_16555	0.16	-0.1
3,505,654	+		IAI47_16555	0.16	+0.0
3,505,655	-		IAI47_16555	0.16	+0.5
3,505,655	-		IAI47_16555	0.16	-2.0
3,505,655	-		IAI47_16555	0.16	+0.6
3,505,690	+		IAI47_16555	0.17	-0.0
3,505,690	+		IAI47_16555	0.17	-1.2
3,505,690	+		IAI47_16555	0.17	-1.0
3,505,690	+		IAI47_16555	0.17	-2.4
3,505,690	+		IAI47_16555	0.17	-1.5
3,505,691	-		IAI47_16555	0.17	+1.7
3,505,691	-		IAI47_16555	0.17	-0.4
3,505,739	+		IAI47_16555	0.18	-0.8
3,505,740	-		IAI47_16555	0.18	-1.0
3,505,801	+		IAI47_16555	0.20	-0.2
3,505,823	+		IAI47_16555	0.21	-1.2
3,505,823	+		IAI47_16555	0.21	-1.0
3,505,823	+		IAI47_16555	0.21	-1.6
3,505,823	+		IAI47_16555	0.21	-0.7
3,505,823	+		IAI47_16555	0.21	-0.5
3,505,823	+		IAI47_16555	0.21	+1.2
3,505,823	+		IAI47_16555	0.21	-1.3
3,505,823	+		IAI47_16555	0.21	-1.2
3,505,823	+		IAI47_16555	0.21	-0.4
3,505,824	-		IAI47_16555	0.21	-0.3
3,505,824	-		IAI47_16555	0.21	-0.4
3,505,824	-		IAI47_16555	0.21	+0.9
3,505,824	-		IAI47_16555	0.21	+0.9
3,505,824	-		IAI47_16555	0.21	-0.4
3,505,824	-		IAI47_16555	0.21	-0.8
3,505,849	+		IAI47_16555	0.21	-1.3
3,505,849	+		IAI47_16555	0.21	-1.6
3,505,849	+		IAI47_16555	0.21	-2.1
3,505,849	+		IAI47_16555	0.21	-0.9
3,505,849	+		IAI47_16555	0.21	-1.4
3,505,849	+		IAI47_16555	0.21	-0.3
3,505,850	-		IAI47_16555	0.21	+1.0
3,505,850	-		IAI47_16555	0.21	+0.0
3,505,850	-		IAI47_16555	0.21	+2.8
3,505,850	-		IAI47_16555	0.21	-0.5
3,505,853	+		IAI47_16555	0.21	-0.3
3,505,853	+		IAI47_16555	0.21	-0.1
3,505,853	+		IAI47_16555	0.21	-0.5
3,505,853	+		IAI47_16555	0.21	-0.1
3,505,853	+		IAI47_16555	0.21	+0.4
3,505,854	-		IAI47_16555	0.21	-1.1
3,505,854	-		IAI47_16555	0.21	+0.6
3,505,854	-		IAI47_16555	0.21	-1.4
3,505,854	-		IAI47_16555	0.21	-0.9
3,505,876	+		IAI47_16555	0.22	-1.1
3,505,876	+		IAI47_16555	0.22	-1.5
3,505,897	+		IAI47_16555	0.23	-1.2
3,505,897	+		IAI47_16555	0.23	-0.4
3,505,897	+		IAI47_16555	0.23	-0.1
3,505,897	+		IAI47_16555	0.23	-1.8
3,505,898	-		IAI47_16555	0.23	-0.3
3,505,898	-		IAI47_16555	0.23	-0.7
3,505,898	-		IAI47_16555	0.23	-0.3
3,505,910	-		IAI47_16555	0.23	-0.4
3,505,910	-		IAI47_16555	0.23	+0.7