Strain Fitness in Pantoea sp. MT58 around IAI47_13010

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,750,359	+		IAI47_13000	0.64	+0.9
2,750,360	-		IAI47_13000	0.64	-0.7
2,750,360	-		IAI47_13000	0.64	+0.4
2,750,406	-		IAI47_13000	0.70	-1.0
2,750,473	-		IAI47_13000	0.79	+0.1
2,750,479	-		IAI47_13000	0.80	-0.4
2,750,484	+		IAI47_13000	0.81	+0.9
2,750,484	+		IAI47_13000	0.81	+0.3
2,750,484	+		IAI47_13000	0.81	+0.1
2,750,484	+		IAI47_13000	0.81	-0.4
2,750,484	+		IAI47_13000	0.81	+3.4
2,750,484	+		IAI47_13000	0.81	+0.3
2,750,485	-		IAI47_13000	0.81	+0.6
2,750,485	-		IAI47_13000	0.81	-2.1
2,750,485	-		IAI47_13000	0.81	+0.1
2,750,492	-		IAI47_13000	0.82	+0.1
2,750,492	-		IAI47_13000	0.82	+0.4
2,750,492	-		IAI47_13000	0.82	-0.0
2,750,499	+		IAI47_13000	0.83	+1.2
2,750,512	-		IAI47_13000	0.84	-0.3
2,750,530	-		IAI47_13000	0.87	-0.1
2,750,530	-		IAI47_13000	0.87	-1.2
2,750,569	-				-2.2
2,750,587	-				-0.7
2,750,590	+				+2.7
2,750,590	+				+0.3
2,750,590	+				+0.1
2,750,591	-				-1.7
2,750,591	-				-1.2
2,750,591	-				+0.6
2,750,591	-				-1.2
2,750,602	+				+1.2
2,750,602	+				+1.7
2,750,602	+				+0.5
2,750,603	-				-1.7
2,750,603	-				+0.3
2,750,623	+				-0.2
2,750,623	+				-0.8
2,750,623	+				+0.1
2,750,624	-				-0.4
2,750,826	+		IAI47_13005	0.27	-0.1
2,750,827	-		IAI47_13005	0.27	+0.3
2,750,827	-		IAI47_13005	0.27	+1.1
2,750,827	-		IAI47_13005	0.27	+1.6
2,750,827	-		IAI47_13005	0.27	-1.5
2,750,827	-		IAI47_13005	0.27	+0.1
2,750,830	+		IAI47_13005	0.28	+0.1
2,750,895	+		IAI47_13005	0.37	+2.2
2,750,895	+		IAI47_13005	0.37	-0.9
2,750,896	-		IAI47_13005	0.37	-2.7
2,750,896	-		IAI47_13005	0.37	-0.1
2,750,896	-		IAI47_13005	0.37	-0.3
2,750,896	-		IAI47_13005	0.37	-2.1
2,750,974	+		IAI47_13005	0.48	-0.5
2,750,974	+		IAI47_13005	0.48	+0.1
2,750,974	+		IAI47_13005	0.48	-0.9
2,751,012	+		IAI47_13005	0.53	-0.6
2,751,012	+		IAI47_13005	0.53	+1.8
2,751,013	-		IAI47_13005	0.53	+1.1
2,751,090	+		IAI47_13005	0.64	-1.8
2,751,091	-		IAI47_13005	0.64	-0.4
2,751,091	-		IAI47_13005	0.64	-1.8
2,751,149	+		IAI47_13005	0.72	-0.1
2,751,150	-		IAI47_13005	0.72	+0.5
2,751,156	+		IAI47_13005	0.73	-0.7
2,751,210	+		IAI47_13005	0.81	+3.2
2,751,210	+		IAI47_13005	0.81	-0.4
2,751,210	+		IAI47_13005	0.81	-0.0
2,751,210	+		IAI47_13005	0.81	+0.2
2,751,211	-		IAI47_13005	0.81	-0.5
2,751,211	-		IAI47_13005	0.81	-2.1
2,751,211	-		IAI47_13005	0.81	-1.2
2,751,211	-		IAI47_13005	0.81	+0.6
2,751,211	-		IAI47_13005	0.81	-0.4
2,751,217	-		IAI47_13005	0.82	+0.2
2,751,237	+		IAI47_13005	0.84	+1.4
2,751,238	-		IAI47_13005	0.85	+0.3
2,751,266	-		IAI47_13005	0.88	+0.1
2,751,276	+		IAI47_13005	0.90	+1.2
2,751,276	+		IAI47_13005	0.90	+0.5
2,751,276	+		IAI47_13005	0.90	-1.0
2,751,276	+		IAI47_13005	0.90	+1.8
2,751,277	-				+0.3
2,751,277	-				-1.4
2,751,277	-				+0.2
2,751,277	-				-2.4
2,751,277	-				+0.2
2,751,357	+				-1.5
2,751,357	+				-0.9
2,751,358	-				+1.0
2,751,358	-				+0.8
2,751,479	+		IAI47_13010	0.20	-0.7
2,751,480	-		IAI47_13010	0.20	-1.5
2,751,480	-		IAI47_13010	0.20	-0.3
2,751,500	+		IAI47_13010	0.23	-0.4
2,751,501	-		IAI47_13010	0.23	-0.9
2,751,501	-		IAI47_13010	0.23	+0.6
2,751,501	-		IAI47_13010	0.23	-1.3
2,751,549	+		IAI47_13010	0.30	-0.8
2,751,549	+		IAI47_13010	0.30	-0.0
2,751,549	+		IAI47_13010	0.30	+0.2
2,751,549	+		IAI47_13010	0.30	+0.8
2,751,549	+		IAI47_13010	0.30	-0.1
2,751,550	-		IAI47_13010	0.30	-0.0
2,751,550	-		IAI47_13010	0.30	-1.6
2,751,552	+		IAI47_13010	0.30	+0.2
2,751,553	-		IAI47_13010	0.31	+0.1
2,751,660	+		IAI47_13010	0.47	-1.7
2,751,661	-		IAI47_13010	0.47	-0.7
2,751,661	-		IAI47_13010	0.47	+0.4
2,751,661	-		IAI47_13010	0.47	-0.1
2,751,679	-		IAI47_13010	0.49	-0.1
2,751,771	+		IAI47_13010	0.63	+0.4
2,751,771	+		IAI47_13010	0.63	-0.2
2,751,771	+		IAI47_13010	0.63	-0.6
2,751,772	-		IAI47_13010	0.63	+0.9
2,751,780	-		IAI47_13010	0.65	-0.4
2,751,780	-		IAI47_13010	0.65	-0.2
2,751,798	+		IAI47_13010	0.67	+0.1
2,751,798	+		IAI47_13010	0.67	+1.2
2,751,799	-		IAI47_13010	0.67	-1.8
2,751,799	-		IAI47_13010	0.67	+0.6
2,751,799	-		IAI47_13010	0.67	+0.1
2,751,799	-		IAI47_13010	0.67	+0.3
2,751,824	+		IAI47_13010	0.71	+0.9
2,751,825	-		IAI47_13010	0.71	+1.4
2,751,843	+		IAI47_13010	0.74	-0.6
2,751,843	+		IAI47_13010	0.74	+0.1
2,751,843	+		IAI47_13010	0.74	+0.4
2,751,843	+		IAI47_13010	0.74	+1.0
2,751,888	+		IAI47_13010	0.81	-1.4
2,751,889	-		IAI47_13010	0.81	-0.2
2,751,900	+		IAI47_13010	0.83	+1.3
2,751,900	+		IAI47_13010	0.83	-0.2
2,751,900	+		IAI47_13010	0.83	-0.7
2,751,900	+		IAI47_13010	0.83	-0.7
2,751,900	+		IAI47_13010	0.83	-1.9
2,751,901	-		IAI47_13010	0.83	-1.7
2,751,901	-		IAI47_13010	0.83	-0.4
2,751,901	-		IAI47_13010	0.83	-2.1
2,751,901	-		IAI47_13010	0.83	-1.5
2,751,901	-		IAI47_13010	0.83	-0.7
2,751,910	-		IAI47_13010	0.84	-0.4
2,751,915	+		IAI47_13010	0.85	-0.1
2,751,916	-		IAI47_13010	0.85	-0.2
2,751,916	-		IAI47_13010	0.85	-0.0
2,751,916	-		IAI47_13010	0.85	-0.7
2,751,916	-		IAI47_13010	0.85	-0.8
2,751,936	+		IAI47_13010	0.88	-0.1
2,751,956	-				-0.5
2,752,010	+				+0.8
2,752,062	-				+0.1
2,752,092	+				+2.4
2,752,092	+				+0.9
2,752,092	+				-0.4
2,752,092	+				-1.4
2,752,093	-				+1.9
2,752,128	+				-0.2
2,752,146	+				+0.4
2,752,147	-				-0.6
2,752,170	+				+0.3
2,752,170	+				+0.4
2,752,170	+				-0.2
2,752,171	-				+0.6
2,752,171	-				-1.1
2,752,171	-				-0.7
2,752,171	-				-0.4
2,752,222	+		IAI47_13015	0.12	+0.9
2,752,222	+		IAI47_13015	0.12	-0.7
2,752,222	+		IAI47_13015	0.12	-0.3
2,752,222	+		IAI47_13015	0.12	-0.9
2,752,222	+		IAI47_13015	0.12	+1.2
2,752,223	-		IAI47_13015	0.12	+1.6
2,752,223	-		IAI47_13015	0.12	-0.8
2,752,223	-		IAI47_13015	0.12	+0.1
2,752,223	-		IAI47_13015	0.12	+1.4
2,752,254	+		IAI47_13015	0.17	-0.9
2,752,255	-		IAI47_13015	0.17	-0.8
2,752,255	-		IAI47_13015	0.17	-0.8
2,752,323	+		IAI47_13015	0.26	+2.6
2,752,324	-		IAI47_13015	0.26	+0.1
2,752,431	+		IAI47_13015	0.41	+1.1
2,752,441	+		IAI47_13015	0.42	+0.6
2,752,441	+		IAI47_13015	0.42	-0.4
2,752,442	-		IAI47_13015	0.42	-0.8
2,752,442	-		IAI47_13015	0.42	-0.8
2,752,442	-		IAI47_13015	0.42	-1.4
2,752,444	+		IAI47_13015	0.43	+2.1
2,752,444	+		IAI47_13015	0.43	-2.2
2,752,445	-		IAI47_13015	0.43	+1.2
2,752,445	-		IAI47_13015	0.43	-0.2
2,752,445	-		IAI47_13015	0.43	+0.9
2,752,449	+		IAI47_13015	0.43	-0.9
2,752,449	+		IAI47_13015	0.43	-1.4
2,752,489	-		IAI47_13015	0.49	+1.2
2,752,560	+		IAI47_13015	0.58	+2.0
2,752,560	+		IAI47_13015	0.58	-1.4
2,752,560	+		IAI47_13015	0.58	-0.2
2,752,561	-		IAI47_13015	0.59	-1.4
2,752,561	-		IAI47_13015	0.59	+0.9
2,752,561	-		IAI47_13015	0.59	-1.7
2,752,580	+		IAI47_13015	0.61	+1.0
2,752,580	+		IAI47_13015	0.61	-0.7
2,752,581	-		IAI47_13015	0.61	-0.3
2,752,581	-		IAI47_13015	0.61	-0.2
2,752,581	-		IAI47_13015	0.61	-0.9
2,752,588	+		IAI47_13015	0.62	-0.4
2,752,589	-		IAI47_13015	0.62	-0.7
2,752,589	-		IAI47_13015	0.62	+0.3
2,752,589	-		IAI47_13015	0.62	-1.3
2,752,589	-		IAI47_13015	0.62	+0.5
2,752,597	+		IAI47_13015	0.64	+0.6
2,752,597	+		IAI47_13015	0.64	+0.1
2,752,598	-		IAI47_13015	0.64	-0.4
2,752,598	-		IAI47_13015	0.64	+0.5
2,752,729	+		IAI47_13015	0.82	-0.2
2,752,730	-		IAI47_13015	0.82	+0.3
2,752,730	-		IAI47_13015	0.82	-0.9
2,752,730	-		IAI47_13015	0.82	+0.2
2,752,767	+		IAI47_13015	0.87	-0.1
2,752,767	+		IAI47_13015	0.87	-0.0
2,752,767	+		IAI47_13015	0.87	+0.6
2,752,767	+		IAI47_13015	0.87	+1.4
2,752,767	+		IAI47_13015	0.87	+0.2
2,752,768	-		IAI47_13015	0.87	-2.1
2,752,768	-		IAI47_13015	0.87	-1.8
2,752,768	-		IAI47_13015	0.87	-0.7
2,752,839	+				+0.2
2,752,839	+				+1.6
2,752,840	-				-0.2
2,752,840	-				-0.7
2,752,845	+				-1.2
2,752,845	+				-0.7
2,752,845	+				+1.6
2,752,845	+				-1.1
2,752,845	+				+0.1
2,752,845	+				-1.4
2,752,845	+				-0.4
2,752,846	-				-1.4
2,752,846	-				+0.6
2,752,846	-				+0.2
2,752,846	-				-1.7
2,752,861	+				-1.0
2,752,862	-				+0.9
2,752,902	+				-0.4
2,752,931	+				+0.4
2,752,943	+				-1.4
2,752,943	+				-0.4
2,752,943	+				-1.4
2,752,944	-				+0.3
2,752,944	-				+1.1
2,752,944	-				+0.9
2,752,973	-				-1.3
2,752,973	-				+0.1
2,753,015	+		IAI47_13020	0.12	-0.5
2,753,016	-		IAI47_13020	0.12	-0.4
2,753,016	-		IAI47_13020	0.12	-0.4
2,753,016	-		IAI47_13020	0.12	+0.6