Strain Fitness in Pantoea sp. MT58 around IAI47_12840

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,708,038	-				+1.3
2,708,086	+				+1.7
2,708,086	+				-2.3
2,708,087	-				-0.9
2,708,087	-				-0.1
2,708,100	+				+1.7
2,708,100	+				-0.8
2,708,100	+				+1.2
2,708,101	-				-0.4
2,708,101	-				-0.2
2,708,101	-				+1.7
2,708,119	+				-0.6
2,708,119	+				-1.2
2,708,119	+				-0.0
2,708,120	-				+0.7
2,708,120	-				-1.0
2,708,120	-				-0.7
2,708,120	-				+0.7
2,708,142	+				+1.2
2,708,150	+				+3.2
2,708,186	+				-1.2
2,708,186	+				+0.3
2,708,186	+				-0.8
2,708,186	+				-0.9
2,708,186	+				-2.0
2,708,187	-				-0.3
2,708,204	-				-0.9
2,708,231	+				+0.3
2,708,232	-				+2.7
2,708,232	-				-0.9
2,708,232	-				+0.4
2,708,232	-				+0.8
2,708,232	-				-0.7
2,708,232	-				-0.9
2,708,232	-				+2.2
2,708,245	+				+0.7
2,708,245	+				+1.2
2,708,245	+				+0.6
2,708,246	-				+1.1
2,708,312	+		IAI47_12840	0.12	-1.5
2,708,312	+		IAI47_12840	0.12	-1.4
2,708,313	-		IAI47_12840	0.12	+0.9
2,708,313	-		IAI47_12840	0.12	-0.1
2,708,331	+		IAI47_12840	0.12	-0.5
2,708,332	-		IAI47_12840	0.13	-2.2
2,708,342	+		IAI47_12840	0.13	-0.9
2,708,445	+		IAI47_12840	0.18	+1.5
2,708,446	-		IAI47_12840	0.18	+0.1
2,708,462	+		IAI47_12840	0.18	-0.7
2,708,462	+		IAI47_12840	0.18	-0.2
2,708,500	-		IAI47_12840	0.20	-0.7
2,708,541	+		IAI47_12840	0.22	-1.3
2,708,541	+		IAI47_12840	0.22	+0.2
2,708,550	+		IAI47_12840	0.22	+0.9
2,708,551	-		IAI47_12840	0.22	-1.5
2,708,551	-		IAI47_12840	0.22	-1.8
2,708,551	-		IAI47_12840	0.22	-0.3
2,708,551	-		IAI47_12840	0.22	-0.2
2,708,586	+		IAI47_12840	0.24	+0.8
2,708,586	+		IAI47_12840	0.24	+0.9
2,708,586	+		IAI47_12840	0.24	-1.3
2,708,587	-		IAI47_12840	0.24	+1.5
2,708,607	-		IAI47_12840	0.25	-1.3
2,708,607	-		IAI47_12840	0.25	+0.9
2,708,627	+		IAI47_12840	0.26	+1.1
2,708,628	-		IAI47_12840	0.26	-0.5
2,708,642	+		IAI47_12840	0.26	+1.3
2,708,642	+		IAI47_12840	0.26	-0.2
2,708,643	-		IAI47_12840	0.26	+0.1
2,708,643	-		IAI47_12840	0.26	-0.4
2,708,665	-		IAI47_12840	0.27	+1.1
2,708,665	-		IAI47_12840	0.27	-0.5
2,708,671	-		IAI47_12840	0.28	+0.7
2,708,671	-		IAI47_12840	0.28	-1.5
2,708,746	+		IAI47_12840	0.31	-1.3
2,708,746	+		IAI47_12840	0.31	+0.1
2,708,746	+		IAI47_12840	0.31	-0.9
2,708,746	+		IAI47_12840	0.31	+0.7
2,708,746	+		IAI47_12840	0.31	-0.7
2,708,746	+		IAI47_12840	0.31	+0.2
2,708,746	+		IAI47_12840	0.31	-0.2
2,708,746	+		IAI47_12840	0.31	-0.7
2,708,746	+		IAI47_12840	0.31	+0.4
2,708,746	+		IAI47_12840	0.31	-0.5
2,708,746	+		IAI47_12840	0.31	-1.8
2,708,747	-		IAI47_12840	0.31	+0.1
2,708,747	-		IAI47_12840	0.31	+0.5
2,708,747	-		IAI47_12840	0.31	+1.7
2,708,747	-		IAI47_12840	0.31	+1.7
2,708,747	-		IAI47_12840	0.31	+0.7
2,708,747	-		IAI47_12840	0.31	+0.9
2,708,747	-		IAI47_12840	0.31	-0.5
2,708,784	+		IAI47_12840	0.33	+1.1
2,708,784	+		IAI47_12840	0.33	-0.4
2,708,785	-		IAI47_12840	0.33	-0.2
2,708,785	-		IAI47_12840	0.33	-0.6
2,708,807	+		IAI47_12840	0.34	+0.5
2,708,808	-		IAI47_12840	0.34	+0.1
2,708,850	+		IAI47_12840	0.36	+0.4
2,708,851	-		IAI47_12840	0.36	-0.2
2,708,851	-		IAI47_12840	0.36	-0.9
2,708,931	+		IAI47_12840	0.39	+2.4
2,708,936	+		IAI47_12840	0.39	+0.2
2,708,936	+		IAI47_12840	0.39	-2.8
2,708,936	+		IAI47_12840	0.39	-1.3
2,708,936	+		IAI47_12840	0.39	-1.5
2,708,937	-		IAI47_12840	0.39	+2.7
2,708,937	-		IAI47_12840	0.39	-0.6
2,708,937	-		IAI47_12840	0.39	-0.6
2,708,937	-		IAI47_12840	0.39	+0.7
2,708,943	-		IAI47_12840	0.40	-0.1
2,708,986	-		IAI47_12840	0.42	-0.7
2,708,986	-		IAI47_12840	0.42	+0.8
2,709,048	+		IAI47_12840	0.44	+2.4
2,709,048	+		IAI47_12840	0.44	+0.4
2,709,081	+		IAI47_12840	0.46	-0.7
2,709,082	-		IAI47_12840	0.46	-0.4
2,709,163	-		IAI47_12840	0.49	-0.9
2,709,168	+		IAI47_12840	0.50	-1.3
2,709,168	+		IAI47_12840	0.50	-1.7
2,709,186	+		IAI47_12840	0.50	-0.6
2,709,186	+		IAI47_12840	0.50	+0.1
2,709,187	-		IAI47_12840	0.50	-0.9
2,709,187	-		IAI47_12840	0.50	-0.1
2,709,219	+		IAI47_12840	0.52	+1.0
2,709,219	+		IAI47_12840	0.52	+0.1
2,709,219	+		IAI47_12840	0.52	+1.3
2,709,219	+		IAI47_12840	0.52	-1.5
2,709,219	+		IAI47_12840	0.52	+0.1
2,709,219	+		IAI47_12840	0.52	-0.5
2,709,220	-		IAI47_12840	0.52	+0.1
2,709,220	-		IAI47_12840	0.52	-2.0
2,709,220	-		IAI47_12840	0.52	+1.2
2,709,220	-		IAI47_12840	0.52	-1.9
2,709,220	-		IAI47_12840	0.52	-0.9
2,709,220	-		IAI47_12840	0.52	-0.3
2,709,220	-		IAI47_12840	0.52	+0.2
2,709,220	-		IAI47_12840	0.52	+0.2
2,709,220	-		IAI47_12840	0.52	+0.1
2,709,222	+		IAI47_12840	0.52	-0.0
2,709,223	-		IAI47_12840	0.52	-1.3
2,709,297	+		IAI47_12840	0.55	+1.2
2,709,297	+		IAI47_12840	0.55	+0.7
2,709,297	+		IAI47_12840	0.55	-0.6
2,709,298	-		IAI47_12840	0.55	-0.2
2,709,298	-		IAI47_12840	0.55	-0.0
2,709,368	+		IAI47_12840	0.58	+2.1
2,709,368	+		IAI47_12840	0.58	-1.6
2,709,392	+		IAI47_12840	0.60	+2.0
2,709,393	-		IAI47_12840	0.60	-0.4
2,709,393	-		IAI47_12840	0.60	-0.6
2,709,393	-		IAI47_12840	0.60	-0.3
2,709,393	-		IAI47_12840	0.60	+0.8
2,709,393	-		IAI47_12840	0.60	-0.3
2,709,393	-		IAI47_12840	0.60	-2.7
2,709,393	-		IAI47_12840	0.60	+2.2
2,709,402	+		IAI47_12840	0.60	+0.7
2,709,402	+		IAI47_12840	0.60	-0.0
2,709,402	+		IAI47_12840	0.60	+1.9
2,709,402	+		IAI47_12840	0.60	-0.6
2,709,402	+		IAI47_12840	0.60	-1.2
2,709,403	-		IAI47_12840	0.60	+0.1
2,709,403	-		IAI47_12840	0.60	-0.3
2,709,403	-		IAI47_12840	0.60	-0.0
2,709,403	-		IAI47_12840	0.60	-1.3
2,709,403	-		IAI47_12840	0.60	+0.3
2,709,485	+		IAI47_12840	0.64	+0.9
2,709,487	+		IAI47_12840	0.64	-0.0
2,709,487	+		IAI47_12840	0.64	+0.4
2,709,487	+		IAI47_12840	0.64	+1.1
2,709,487	+		IAI47_12840	0.64	+0.3
2,709,487	+		IAI47_12840	0.64	+0.9
2,709,488	-		IAI47_12840	0.64	+0.4
2,709,488	-		IAI47_12840	0.64	-0.9
2,709,488	-		IAI47_12840	0.64	-0.3
2,709,488	-		IAI47_12840	0.64	-0.9
2,709,488	-		IAI47_12840	0.64	-0.9
2,709,488	-		IAI47_12840	0.64	-1.6
2,709,488	-		IAI47_12840	0.64	-0.3
2,709,501	+		IAI47_12840	0.64	+3.7
2,709,501	+		IAI47_12840	0.64	+0.7
2,709,510	+		IAI47_12840	0.65	-1.7
2,709,511	-		IAI47_12840	0.65	+0.5
2,709,511	-		IAI47_12840	0.65	+0.1
2,709,529	+		IAI47_12840	0.66	+1.4
2,709,529	+		IAI47_12840	0.66	-0.2
2,709,554	+		IAI47_12840	0.67	-2.3
2,709,606	-		IAI47_12840	0.69	-1.7
2,709,627	+		IAI47_12840	0.70	+0.1
2,709,627	+		IAI47_12840	0.70	+0.8
2,709,628	-		IAI47_12840	0.70	-0.7
2,709,628	-		IAI47_12840	0.70	-1.0
2,709,639	-		IAI47_12840	0.70	-0.0
2,709,753	+		IAI47_12840	0.76	-2.5
2,709,754	-		IAI47_12840	0.76	-1.3
2,709,776	+		IAI47_12840	0.77	-1.3
2,709,776	+		IAI47_12840	0.77	-0.2
2,709,776	+		IAI47_12840	0.77	+0.7
2,709,776	+		IAI47_12840	0.77	-1.5
2,709,777	-		IAI47_12840	0.77	-1.8
2,709,777	-		IAI47_12840	0.77	-2.2
2,709,777	-		IAI47_12840	0.77	+0.3
2,709,777	-		IAI47_12840	0.77	-1.7
2,709,777	-		IAI47_12840	0.77	-0.5
2,709,804	-		IAI47_12840	0.78	-0.2
2,709,804	-		IAI47_12840	0.78	-0.3
2,709,827	+		IAI47_12840	0.79	+0.1
2,709,827	+		IAI47_12840	0.79	-0.3
2,709,827	+		IAI47_12840	0.79	-0.7
2,709,827	+		IAI47_12840	0.79	+1.1
2,709,828	-		IAI47_12840	0.79	-0.3
2,709,828	-		IAI47_12840	0.79	-1.7
2,709,828	-		IAI47_12840	0.79	+0.1
2,709,830	+		IAI47_12840	0.79	-0.7
2,709,830	+		IAI47_12840	0.79	-0.3
2,709,830	+		IAI47_12840	0.79	+0.4
2,709,830	+		IAI47_12840	0.79	-1.1
2,709,830	+		IAI47_12840	0.79	-0.8
2,709,830	+		IAI47_12840	0.79	+0.7
2,709,831	-		IAI47_12840	0.79	-1.5
2,709,831	-		IAI47_12840	0.79	+0.3
2,709,831	-		IAI47_12840	0.79	+0.1
2,709,834	-		IAI47_12840	0.79	-0.3
2,709,834	-		IAI47_12840	0.79	-0.2
2,709,931	+		IAI47_12840	0.83	-1.5
2,709,955	+		IAI47_12840	0.84	-1.4
2,709,955	+		IAI47_12840	0.84	+0.5
2,709,956	-		IAI47_12840	0.85	+0.8
2,709,967	+		IAI47_12840	0.85	+0.2
2,709,968	-		IAI47_12840	0.85	-1.1
2,709,981	+		IAI47_12840	0.86	-1.2
2,709,981	+		IAI47_12840	0.86	-1.5
2,709,981	+		IAI47_12840	0.86	-0.9
2,709,982	-		IAI47_12840	0.86	-0.7
2,710,058	+		IAI47_12840	0.89	-0.9
2,710,058	+		IAI47_12840	0.89	-1.2
2,710,059	-		IAI47_12840	0.89	-0.9
2,710,059	-		IAI47_12840	0.89	-0.2
2,710,074	+		IAI47_12840	0.90	+0.2
2,710,074	+		IAI47_12840	0.90	-0.1
2,710,074	+		IAI47_12840	0.90	-0.0
2,710,075	-		IAI47_12840	0.90	+0.3
2,710,075	-		IAI47_12840	0.90	-0.5
2,710,118	+				+1.1
2,710,119	-				+0.4
2,710,145	+				-2.0
2,710,145	+				+0.2
2,710,145	+				+0.2
2,710,145	+				-0.7
2,710,146	-				-1.3
2,710,146	-				+0.2
2,710,146	-				-0.3
2,710,148	+				+0.2
2,710,171	+				-2.2
2,710,172	-				-0.6
2,710,203	+				-0.7
2,710,203	+				-1.3
2,710,204	-				-0.3
2,710,223	+				+1.0
2,710,223	+				-1.4
2,710,223	+				-2.2
2,710,224	-				-0.3
2,710,224	-				+1.1
2,710,224	-				-0.7
2,710,224	-				-0.5
2,710,224	-				-1.7
2,710,224	-				-1.7
2,710,224	-				+0.5
2,710,224	-				-2.5
2,710,224	-				-1.3
2,710,224	-				+0.3
2,710,258	-				+1.1
2,710,258	-				+0.8
2,710,304	+				-1.3
2,710,305	-				-0.7
2,710,305	-				-1.5
2,710,305	-				+1.3
2,710,310	+				-0.3
2,710,311	-				+0.1
2,710,311	-				-1.1
2,710,332	-				-0.2
2,710,355	+				-1.0
2,710,355	+				-0.3
2,710,356	-				-1.2
2,710,356	-				-0.1
2,710,425	+				-0.8
2,710,426	-				-1.1
2,710,426	-				+0.4
2,710,434	+				+0.1
2,710,434	+				-0.8
2,710,436	+				+0.1
2,710,453	+				-1.3
2,710,453	+				+1.0
2,710,454	-				-1.2
2,710,454	-				-0.0
2,710,491	-				+3.9
2,710,516	+				-1.8
2,710,517	-				+5.4
2,710,517	-				+0.6
2,710,517	-				-0.9
2,710,517	-				+2.7
2,710,517	-				+2.5
2,710,517	-				+1.7
2,710,808	-				+2.2
2,710,824	-				+1.1
2,710,824	-				-1.2
2,710,824	-				+1.0
2,710,824	-				+3.1
2,710,836	-				+0.5