Strain Fitness in Pantoea sp. MT58 around IAI47_10680

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,260,286	+				-0.2
2,260,286	+				+0.4
2,260,286	+				+2.3
2,260,287	-				+1.2
2,260,287	-				+0.4
2,260,287	-				-1.6
2,260,287	-				+0.4
2,260,288	+				-0.0
2,260,289	-				+0.2
2,260,289	-				-1.0
2,260,291	+				+1.3
2,260,291	+				+1.7
2,260,346	-				+0.1
2,260,355	+				+1.0
2,260,355	+				-0.2
2,260,355	+				+0.4
2,260,355	+				-0.0
2,260,356	-				+1.7
2,260,359	+				+1.6
2,260,376	+				-0.5
2,260,377	-				-2.2
2,260,422	+				-0.6
2,260,433	+				-0.7
2,260,445	+				-1.6
2,260,446	-				+0.6
2,260,460	-				+0.3
2,260,515	-		IAI47_10675	0.21	-0.7
2,260,545	-		IAI47_10675	0.32	-0.3
2,260,565	+		IAI47_10675	0.39	-0.0
2,260,565	+		IAI47_10675	0.39	+0.4
2,260,565	+		IAI47_10675	0.39	-0.2
2,260,566	-		IAI47_10675	0.39	+0.2
2,260,566	-		IAI47_10675	0.39	+0.2
2,260,566	-		IAI47_10675	0.39	+0.8
2,260,616	-		IAI47_10675	0.57	+0.7
2,260,616	-		IAI47_10675	0.57	+0.8
2,260,616	-		IAI47_10675	0.57	+2.3
2,260,616	-		IAI47_10675	0.57	+0.4
2,260,658	+		IAI47_10675	0.72	-0.6
2,260,677	+		IAI47_10675	0.79	-1.9
2,260,715	-				-0.1
2,260,718	-				+2.0
2,260,718	-				-0.1
2,260,727	+				-0.0
2,260,728	-				-0.1
2,260,737	-				+0.7
2,260,737	-				+1.0
2,260,748	+				-0.0
2,260,757	+				-1.3
2,260,757	+				+0.4
2,260,757	+				-0.2
2,260,758	-				+0.6
2,260,758	-				+1.6
2,260,758	-				-0.5
2,260,758	-				+2.0
2,260,758	-				+0.4
2,260,758	-				-0.3
2,260,761	+				-0.0
2,260,762	-				+0.4
2,260,762	-				+0.9
2,260,762	-				+0.2
2,260,767	-				+1.0
2,260,803	+				-0.5
2,260,804	-				-0.8
2,260,820	-				-0.4
2,260,836	-				+1.4
2,260,841	+				-1.2
2,260,859	+				+0.1
2,260,860	-				+0.4
2,260,880	+				-0.3
2,260,881	+				-0.5
2,260,881	+				-0.0
2,260,882	-				+1.3
2,260,882	-				-0.8
2,260,882	-				+0.4
2,260,884	-				-0.1
2,260,884	-				+0.4
2,260,884	-				-0.3
2,260,900	+				-1.6
2,260,901	-				+0.2
2,260,946	+				+0.8
2,260,960	+				-0.4
2,260,960	+				-0.7
2,260,960	+				+1.0
2,260,961	-				-0.2
2,260,961	-				-0.0
2,260,967	-				+0.7
2,260,972	+				-0.3
2,260,972	+				+1.4
2,260,972	+				+1.0
2,260,973	-				+0.2
2,260,973	-				+0.3
2,260,983	+				-0.5
2,261,004	-				-0.4
2,261,054	-				-0.6
2,261,054	-				-1.1
2,261,054	-				+0.3
2,261,054	-				-0.7
2,261,058	-				-0.6
2,261,067	+				-0.0
2,261,068	-				-0.0
2,261,073	+				-0.0
2,261,073	+				+0.4
2,261,074	-				+0.7
2,261,086	-				-1.3
2,261,095	-				+0.1
2,261,113	+				-0.6
2,261,113	+				-0.1
2,261,113	+				+0.3
2,261,113	+				-1.5
2,261,113	+				-1.2
2,261,113	+				-0.7
2,261,113	+				+0.7
2,261,113	+				+0.4
2,261,114	-				-1.0
2,261,114	-				-0.2
2,261,114	-				-0.6
2,261,114	-				-1.3
2,261,114	-				-0.7
2,261,114	-				+0.5
2,261,114	-				+0.5
2,261,114	-				-2.1
2,261,114	-				-0.6
2,261,114	-				+0.1
2,261,119	+				-0.5
2,261,119	+				-0.0
2,261,120	-				-1.8
2,261,120	-				-1.3
2,261,120	-				-0.1
2,261,120	-				-1.0
2,261,126	-				-0.6
2,261,126	-				-0.7
2,261,171	+				+0.4
2,261,171	+				-1.8
2,261,206	+				-0.5
2,261,206	+				+1.0
2,261,207	-				+0.3
2,261,207	-				+0.6
2,261,207	-				-0.8
2,261,207	-				-0.4
2,261,207	-				-0.0
2,261,212	+				-0.5
2,261,232	-				-0.3
2,261,232	-				+0.5
2,261,322	+				+2.1
2,261,322	+				+2.0
2,261,322	+				+1.3
2,261,322	+				+2.5
2,261,323	-				+2.0
2,261,323	-				-0.2
2,261,323	-				-1.8
2,261,323	-				-0.2
2,261,381	+		IAI47_10680	0.19	+1.4
2,261,381	+		IAI47_10680	0.19	+0.2
2,261,381	+		IAI47_10680	0.19	+1.4
2,261,394	+		IAI47_10680	0.22	+0.7
2,261,459	+		IAI47_10680	0.34	+1.2
2,261,580	+		IAI47_10680	0.56	+1.7
2,261,580	+		IAI47_10680	0.56	-0.3
2,261,580	+		IAI47_10680	0.56	+1.4
2,261,580	+		IAI47_10680	0.56	+1.3
2,261,581	-		IAI47_10680	0.56	-1.8
2,261,581	-		IAI47_10680	0.56	-0.8
2,261,643	+		IAI47_10680	0.67	+1.5
2,261,643	+		IAI47_10680	0.67	+1.4
2,261,643	+		IAI47_10680	0.67	+2.0
2,261,643	+		IAI47_10680	0.67	-0.6
2,261,643	+		IAI47_10680	0.67	+1.7
2,261,643	+		IAI47_10680	0.67	+0.8
2,261,643	+		IAI47_10680	0.67	+2.4
2,261,644	-		IAI47_10680	0.68	-1.5
2,261,644	-		IAI47_10680	0.68	-1.6
2,261,644	-		IAI47_10680	0.68	-0.6
2,261,644	-		IAI47_10680	0.68	-1.2
2,261,644	-		IAI47_10680	0.68	-1.3
2,261,647	+		IAI47_10680	0.68	-0.2
2,261,647	+		IAI47_10680	0.68	+2.0
2,261,647	+		IAI47_10680	0.68	+1.2
2,261,647	+		IAI47_10680	0.68	+2.1
2,261,648	-		IAI47_10680	0.68	+0.4
2,261,648	-		IAI47_10680	0.68	-1.0
2,261,670	+		IAI47_10680	0.72	+1.4
2,261,670	+		IAI47_10680	0.72	+2.3
2,261,670	+		IAI47_10680	0.72	+1.3
2,261,671	-		IAI47_10680	0.73	+1.0
2,261,671	-		IAI47_10680	0.73	+1.2
2,261,729	+		IAI47_10680	0.83	+2.5
2,261,730	-		IAI47_10680	0.83	-0.6
2,261,732	+		IAI47_10680	0.84	+0.4
2,261,732	+		IAI47_10680	0.84	+5.8
2,261,733	-		IAI47_10680	0.84	+1.0
2,261,733	-		IAI47_10680	0.84	+1.0
2,261,791	+				-0.8
2,261,791	+				+2.0
2,261,792	-				-0.8
2,261,870	+				-0.8
2,261,870	+				+0.4
2,261,871	-				-0.0
2,261,911	+				+0.4
2,261,911	+				+0.8
2,261,978	+		IAI47_10685	0.14	+0.4
2,261,989	+		IAI47_10685	0.15	-1.0
2,261,989	+		IAI47_10685	0.15	+0.8
2,261,990	-		IAI47_10685	0.15	+0.3
2,261,990	-		IAI47_10685	0.15	-0.6
2,261,990	-		IAI47_10685	0.15	-0.6
2,262,099	+		IAI47_10685	0.25	-0.3
2,262,099	+		IAI47_10685	0.25	-0.8
2,262,099	+		IAI47_10685	0.25	+1.5
2,262,100	-		IAI47_10685	0.25	+0.7
2,262,100	-		IAI47_10685	0.25	+0.4
2,262,125	-		IAI47_10685	0.27	-0.5
2,262,210	+		IAI47_10685	0.34	+1.6
2,262,211	-		IAI47_10685	0.34	-1.4
2,262,211	-		IAI47_10685	0.34	-0.0
2,262,211	-		IAI47_10685	0.34	+1.0
2,262,211	-		IAI47_10685	0.34	+0.4
2,262,211	-		IAI47_10685	0.34	-0.0
2,262,214	+		IAI47_10685	0.35	+0.9
2,262,214	+		IAI47_10685	0.35	+0.4
2,262,214	+		IAI47_10685	0.35	+1.4
2,262,215	-		IAI47_10685	0.35	-0.5
2,262,215	-		IAI47_10685	0.35	-0.1
2,262,215	-		IAI47_10685	0.35	-1.3
2,262,223	+		IAI47_10685	0.35	-0.0
2,262,232	+		IAI47_10685	0.36	-0.3
2,262,259	-		IAI47_10685	0.39	-0.0
2,262,318	+		IAI47_10685	0.44	+0.1
2,262,318	+		IAI47_10685	0.44	+1.0
2,262,319	-		IAI47_10685	0.44	+1.4
2,262,345	+		IAI47_10685	0.46	+1.0
2,262,345	+		IAI47_10685	0.46	+2.9
2,262,354	+		IAI47_10685	0.47	+2.5
2,262,355	-		IAI47_10685	0.47	+0.4
2,262,355	-		IAI47_10685	0.47	-0.3
2,262,376	+		IAI47_10685	0.49	+2.0
2,262,376	+		IAI47_10685	0.49	+2.0
2,262,376	+		IAI47_10685	0.49	-0.4
2,262,377	-		IAI47_10685	0.49	+1.7
2,262,377	-		IAI47_10685	0.49	+0.1
2,262,377	-		IAI47_10685	0.49	-0.8
2,262,377	-		IAI47_10685	0.49	-1.2
2,262,411	-		IAI47_10685	0.52	-0.1
2,262,421	+		IAI47_10685	0.53	+2.0
2,262,422	-		IAI47_10685	0.53	+2.6
2,262,440	-		IAI47_10685	0.54	-0.8
2,262,526	+		IAI47_10685	0.62	-1.0
2,262,527	-		IAI47_10685	0.62	+0.7
2,262,527	-		IAI47_10685	0.62	+0.8
2,262,537	+		IAI47_10685	0.63	-0.5
2,262,537	+		IAI47_10685	0.63	+2.4
2,262,538	-		IAI47_10685	0.63	+0.8
2,262,603	+		IAI47_10685	0.68	+0.5
2,262,603	+		IAI47_10685	0.68	+1.0
2,262,603	+		IAI47_10685	0.68	-0.6
2,262,609	+		IAI47_10685	0.69	-0.3
2,262,610	-		IAI47_10685	0.69	-1.3
2,262,610	-		IAI47_10685	0.69	+1.7
2,262,610	-		IAI47_10685	0.69	+1.7
2,262,621	-		IAI47_10685	0.70	-1.0
2,262,640	+		IAI47_10685	0.72	+0.5
2,262,640	+		IAI47_10685	0.72	-1.3
2,262,640	+		IAI47_10685	0.72	-0.9
2,262,686	-		IAI47_10685	0.76	+1.0
2,262,693	+		IAI47_10685	0.76	+0.8
2,262,693	+		IAI47_10685	0.76	+2.0
2,262,693	+		IAI47_10685	0.76	-0.0
2,262,694	-		IAI47_10685	0.76	+1.7
2,262,694	-		IAI47_10685	0.76	-1.6
2,262,694	-		IAI47_10685	0.76	-1.6
2,262,694	-		IAI47_10685	0.76	-0.8
2,262,694	-		IAI47_10685	0.76	-2.3
2,262,694	-		IAI47_10685	0.76	-0.9
2,262,694	-		IAI47_10685	0.76	+0.7
2,262,698	-		IAI47_10685	0.77	-0.9
2,262,726	-		IAI47_10685	0.79	-0.0
2,262,726	-		IAI47_10685	0.79	+0.4
2,262,726	-		IAI47_10685	0.79	-2.0
2,262,726	-		IAI47_10685	0.79	-0.6
2,262,726	-		IAI47_10685	0.79	+1.4