Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01670 and IAI47_01675 are separated by 217 nucleotides IAI47_01675 and IAI47_01680 are separated by 359 nucleotides
IAI47_01670: IAI47_01670 - YhgN family NAAT transporter, at 362,076 to 362,669
_01670
IAI47_01675: IAI47_01675 - aspartate-semialdehyde dehydrogenase, at 362,887 to 363,996
_01675
IAI47_01680: IAI47_01680 - 1,4-alpha-glucan branching enzyme, at 364,356 to 366,539
_01680
Position (kb) 362
363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 361.928 kb on + strand at 361.938 kb on + strand at 361.954 kb on + strand at 361.954 kb on + strand at 361.954 kb on + strand at 361.954 kb on + strand at 361.955 kb on - strand at 361.955 kb on - strand at 361.955 kb on - strand at 361.955 kb on - strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.973 kb on - strand at 361.973 kb on - strand at 361.973 kb on - strand at 361.974 kb on + strand at 361.974 kb on + strand at 361.974 kb on + strand at 361.975 kb on - strand at 361.975 kb on - strand at 361.975 kb on - strand at 361.975 kb on - strand at 361.975 kb on - strand at 361.975 kb on - strand at 361.976 kb on + strand at 361.976 kb on + strand at 361.977 kb on - strand at 361.977 kb on - strand at 361.977 kb on - strand at 361.977 kb on - strand at 361.977 kb on - strand at 361.980 kb on + strand at 361.980 kb on + strand at 361.980 kb on + strand at 361.981 kb on - strand at 361.983 kb on + strand at 361.984 kb on - strand at 361.987 kb on - strand at 362.014 kb on + strand at 362.014 kb on + strand at 362.014 kb on + strand at 362.014 kb on + strand at 362.058 kb on - strand at 362.058 kb on - strand at 362.058 kb on - strand at 362.077 kb on + strand at 362.077 kb on + strand at 362.077 kb on + strand at 362.077 kb on + strand at 362.077 kb on + strand at 362.078 kb on - strand at 362.078 kb on - strand at 362.078 kb on - strand at 362.078 kb on - strand at 362.089 kb on + strand at 362.129 kb on + strand at 362.129 kb on + strand at 362.129 kb on + strand at 362.129 kb on + strand at 362.130 kb on - strand at 362.130 kb on - strand at 362.130 kb on - strand at 362.130 kb on - strand at 362.130 kb on - strand at 362.136 kb on + strand, within IAI47_01670 at 362.136 kb on + strand, within IAI47_01670 at 362.137 kb on - strand, within IAI47_01670 at 362.137 kb on - strand, within IAI47_01670 at 362.175 kb on - strand, within IAI47_01670 at 362.175 kb on - strand, within IAI47_01670 at 362.175 kb on - strand, within IAI47_01670 at 362.175 kb on - strand, within IAI47_01670 at 362.175 kb on - strand, within IAI47_01670 at 362.278 kb on + strand, within IAI47_01670 at 362.279 kb on - strand, within IAI47_01670 at 362.279 kb on - strand, within IAI47_01670 at 362.374 kb on - strand, within IAI47_01670 at 362.417 kb on + strand, within IAI47_01670 at 362.417 kb on + strand, within IAI47_01670 at 362.551 kb on - strand, within IAI47_01670 at 362.551 kb on - strand, within IAI47_01670 at 362.586 kb on + strand, within IAI47_01670 at 362.586 kb on + strand, within IAI47_01670 at 362.586 kb on + strand, within IAI47_01670 at 362.597 kb on + strand, within IAI47_01670 at 362.597 kb on + strand, within IAI47_01670 at 362.598 kb on - strand, within IAI47_01670 at 362.628 kb on - strand at 362.628 kb on - strand at 362.628 kb on - strand at 362.631 kb on + strand at 362.631 kb on + strand at 362.631 kb on + strand at 362.632 kb on - strand at 362.632 kb on - strand at 362.632 kb on - strand at 362.632 kb on - strand at 362.632 kb on - strand at 362.640 kb on + strand at 362.640 kb on + strand at 362.640 kb on + strand at 362.640 kb on + strand at 362.640 kb on + strand at 362.641 kb on - strand at 362.641 kb on - strand at 362.641 kb on - strand at 362.641 kb on - strand at 362.641 kb on - strand at 362.641 kb on - strand at 362.643 kb on + strand at 362.643 kb on + strand at 362.644 kb on - strand at 362.644 kb on - strand at 362.644 kb on - strand at 362.644 kb on - strand at 362.676 kb on + strand at 362.706 kb on + strand at 362.706 kb on + strand at 362.706 kb on + strand at 362.706 kb on + strand at 362.706 kb on + strand at 362.706 kb on + strand at 362.707 kb on - strand at 362.707 kb on - strand at 362.707 kb on - strand at 362.707 kb on - strand at 362.707 kb on - strand at 362.709 kb on + strand at 362.709 kb on + strand at 362.709 kb on + strand at 362.709 kb on + strand at 362.709 kb on + strand at 362.710 kb on - strand at 362.713 kb on + strand at 362.714 kb on - strand at 362.745 kb on - strand at 362.793 kb on + strand at 362.793 kb on + strand at 362.793 kb on + strand at 362.793 kb on + strand at 362.794 kb on - strand at 362.794 kb on - strand at 362.794 kb on - strand at 362.794 kb on - strand at 362.794 kb on - strand at 362.794 kb on - strand at 362.800 kb on + strand at 362.803 kb on + strand at 362.803 kb on + strand at 362.803 kb on + strand at 362.803 kb on + strand at 362.803 kb on + strand at 362.803 kb on + strand at 362.826 kb on + strand at 362.864 kb on + strand at 362.864 kb on + strand at 362.864 kb on + strand at 362.864 kb on + strand at 362.864 kb on + strand at 362.864 kb on + strand at 363.986 kb on + strand at 363.986 kb on + strand at 363.986 kb on + strand at 363.986 kb on + strand at 363.986 kb on + strand at 363.994 kb on + strand at 363.994 kb on + strand at 363.994 kb on + strand at 363.995 kb on - strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.004 kb on + strand at 364.005 kb on - strand at 364.005 kb on - strand at 364.005 kb on - strand at 364.005 kb on - strand at 364.005 kb on - strand at 364.005 kb on - strand at 364.048 kb on + strand at 364.062 kb on + strand at 364.062 kb on + strand at 364.062 kb on + strand at 364.063 kb on - strand at 364.063 kb on - strand at 364.075 kb on - strand at 364.116 kb on + strand at 364.116 kb on + strand at 364.117 kb on - strand at 364.117 kb on - strand at 364.117 kb on - strand at 364.125 kb on + strand at 364.125 kb on + strand at 364.125 kb on + strand at 364.125 kb on + strand at 364.126 kb on - strand at 364.126 kb on - strand at 364.126 kb on - strand at 364.154 kb on + strand at 364.154 kb on + strand at 364.154 kb on + strand at 364.155 kb on - strand at 364.155 kb on - strand at 364.155 kb on - strand at 364.155 kb on - strand at 364.155 kb on - strand at 364.155 kb on - strand at 364.161 kb on + strand at 364.161 kb on + strand at 364.162 kb on - strand at 364.162 kb on - strand at 364.162 kb on - strand at 364.162 kb on - strand at 364.162 kb on - strand at 364.181 kb on + strand at 364.181 kb on + strand at 364.181 kb on + strand at 364.202 kb on + strand at 364.202 kb on + strand at 364.202 kb on + strand at 364.215 kb on + strand at 364.253 kb on + strand at 364.253 kb on + strand at 364.254 kb on - strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.266 kb on + strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.267 kb on - strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.270 kb on + strand at 364.271 kb on - strand at 364.271 kb on - strand at 364.271 kb on - strand at 364.311 kb on + strand at 364.311 kb on + strand at 364.311 kb on + strand at 364.312 kb on - strand at 364.312 kb on - strand at 364.338 kb on + strand at 364.339 kb on - strand at 364.339 kb on - strand at 364.403 kb on + strand at 364.403 kb on + strand at 364.407 kb on + strand at 364.407 kb on + strand at 364.408 kb on - strand at 364.426 kb on + strand at 364.427 kb on - strand at 364.429 kb on + strand at 364.429 kb on + strand at 364.429 kb on + strand at 364.430 kb on - strand at 364.430 kb on - strand at 364.520 kb on + strand at 364.650 kb on + strand, within IAI47_01680 at 364.651 kb on - strand, within IAI47_01680 at 364.651 kb on - strand, within IAI47_01680 at 364.651 kb on - strand, within IAI47_01680 at 364.870 kb on + strand, within IAI47_01680 at 364.870 kb on + strand, within IAI47_01680 at 364.870 kb on + strand, within IAI47_01680 at 364.871 kb on - strand, within IAI47_01680 at 364.871 kb on - strand, within IAI47_01680 at 364.871 kb on - strand, within IAI47_01680 at 364.871 kb on - strand, within IAI47_01680 at 364.874 kb on + strand, within IAI47_01680 at 364.874 kb on + strand, within IAI47_01680 at 364.874 kb on + strand, within IAI47_01680 at 364.874 kb on + strand, within IAI47_01680 at 364.874 kb on + strand, within IAI47_01680 at 364.874 kb on + strand, within IAI47_01680 at 364.874 kb on + strand, within IAI47_01680 at 364.875 kb on - strand, within IAI47_01680 at 364.875 kb on - strand, within IAI47_01680 at 364.918 kb on - strand, within IAI47_01680 at 364.918 kb on - strand, within IAI47_01680 at 364.923 kb on + strand, within IAI47_01680 at 364.923 kb on + strand, within IAI47_01680 at 364.923 kb on + strand, within IAI47_01680 at 364.923 kb on + strand, within IAI47_01680 at 364.931 kb on + strand, within IAI47_01680
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 361,928 + -1.0 361,938 + -1.5 361,954 + -0.1 361,954 + -0.5 361,954 + -1.2 361,954 + -0.3 361,955 - -0.2 361,955 - +2.5 361,955 - -0.6 361,955 - -0.4 361,972 + -0.1 361,972 + -2.1 361,972 + -1.2 361,972 + +0.3 361,972 + -2.5 361,972 + -0.0 361,972 + -0.8 361,972 + -1.0 361,973 - +1.0 361,973 - -0.9 361,973 - -0.4 361,974 + -1.2 361,974 + +3.1 361,974 + -1.3 361,975 - -0.5 361,975 - -2.9 361,975 - +0.6 361,975 - -1.3 361,975 - -0.7 361,975 - +1.0 361,976 + -0.0 361,976 + -0.4 361,977 - -1.5 361,977 - -0.9 361,977 - +1.7 361,977 - -0.1 361,977 - +0.6 361,980 + +1.0 361,980 + -1.6 361,980 + +1.1 361,981 - -0.7 361,983 + +1.0 361,984 - +0.4 361,987 - -0.4 362,014 + -1.6 362,014 + -0.3 362,014 + +0.1 362,014 + -0.9 362,058 - +0.4 362,058 - -0.7 362,058 - -1.6 362,077 + -1.3 362,077 + -1.7 362,077 + -0.8 362,077 + +2.9 362,077 + +0.9 362,078 - +2.5 362,078 - +0.7 362,078 - +2.2 362,078 - -0.9 362,089 + -0.6 362,129 + -0.9 362,129 + -0.4 362,129 + +0.3 362,129 + -0.8 362,130 - +2.3 362,130 - -1.8 362,130 - -0.5 362,130 - +0.9 362,130 - -0.1 362,136 + IAI47_01670 0.10 +0.2 362,136 + IAI47_01670 0.10 -1.5 362,137 - IAI47_01670 0.10 -0.4 362,137 - IAI47_01670 0.10 +0.6 362,175 - IAI47_01670 0.17 -0.9 362,175 - IAI47_01670 0.17 -0.1 362,175 - IAI47_01670 0.17 +0.5 362,175 - IAI47_01670 0.17 -0.6 362,175 - IAI47_01670 0.17 -0.9 362,278 + IAI47_01670 0.34 -1.3 362,279 - IAI47_01670 0.34 +0.8 362,279 - IAI47_01670 0.34 -0.1 362,374 - IAI47_01670 0.50 +4.7 362,417 + IAI47_01670 0.57 -1.5 362,417 + IAI47_01670 0.57 -0.7 362,551 - IAI47_01670 0.80 -1.0 362,551 - IAI47_01670 0.80 -1.3 362,586 + IAI47_01670 0.86 -0.0 362,586 + IAI47_01670 0.86 -1.6 362,586 + IAI47_01670 0.86 -1.3 362,597 + IAI47_01670 0.88 +0.4 362,597 + IAI47_01670 0.88 -0.3 362,598 - IAI47_01670 0.88 +1.0 362,628 - -0.4 362,628 - +0.4 362,628 - -0.0 362,631 + -0.4 362,631 + +1.0 362,631 + -0.3 362,632 - +0.5 362,632 - +1.2 362,632 - +1.6 362,632 - +1.2 362,632 - +0.5 362,640 + +2.3 362,640 + -1.9 362,640 + -1.1 362,640 + +0.4 362,640 + -0.5 362,641 - +2.3 362,641 - -0.9 362,641 - +1.1 362,641 - -2.0 362,641 - -0.0 362,641 - -0.0 362,643 + -1.3 362,643 + -2.0 362,644 - -2.8 362,644 - -1.5 362,644 - +1.7 362,644 - -0.5 362,676 + -0.1 362,706 + +1.4 362,706 + +0.1 362,706 + +0.2 362,706 + +1.4 362,706 + +1.8 362,706 + -1.6 362,707 - +0.7 362,707 - +3.1 362,707 - +1.0 362,707 - -0.4 362,707 - +0.3 362,709 + +0.8 362,709 + +1.4 362,709 + -0.4 362,709 + -0.2 362,709 + -1.2 362,710 - -1.6 362,713 + +0.1 362,714 - -1.8 362,745 - -0.2 362,793 + +1.2 362,793 + +0.6 362,793 + +0.6 362,793 + +1.7 362,794 - +0.8 362,794 - -0.2 362,794 - +1.1 362,794 - -2.5 362,794 - -0.2 362,794 - -0.1 362,800 + +0.2 362,803 + -0.1 362,803 + -0.6 362,803 + -0.1 362,803 + +3.2 362,803 + +0.7 362,803 + -1.1 362,826 + +1.3 362,864 + +1.5 362,864 + +2.4 362,864 + +0.4 362,864 + +0.3 362,864 + +0.8 362,864 + -0.3 363,986 + +0.8 363,986 + -0.5 363,986 + +0.1 363,986 + +1.0 363,986 + -0.6 363,994 + -0.5 363,994 + -0.9 363,994 + -1.7 363,995 - -0.1 364,004 + -1.0 364,004 + -0.9 364,004 + +4.4 364,004 + +3.4 364,004 + +0.5 364,004 + -0.0 364,004 + -1.6 364,004 + +0.6 364,004 + -0.4 364,004 + -0.0 364,004 + -1.6 364,005 - -1.3 364,005 - -0.8 364,005 - +0.0 364,005 - +0.1 364,005 - -0.8 364,005 - +0.4 364,048 + +1.9 364,062 + +3.1 364,062 + -1.0 364,062 + +1.0 364,063 - -0.0 364,063 - +4.5 364,075 - -0.7 364,116 + -0.0 364,116 + -0.7 364,117 - +0.3 364,117 - +2.0 364,117 - -1.5 364,125 + -1.3 364,125 + +0.1 364,125 + -1.3 364,125 + +0.3 364,126 - +0.3 364,126 - -0.9 364,126 - +2.2 364,154 + -1.6 364,154 + +1.7 364,154 + -0.3 364,155 - +0.3 364,155 - -0.5 364,155 - -0.5 364,155 - -0.3 364,155 - -0.8 364,155 - -0.0 364,161 + -1.7 364,161 + +2.7 364,162 - -0.2 364,162 - +0.5 364,162 - -0.5 364,162 - -0.4 364,162 - -0.7 364,181 + -0.8 364,181 + +0.7 364,181 + -0.4 364,202 + -1.6 364,202 + +0.1 364,202 + -0.1 364,215 + -0.5 364,253 + -0.2 364,253 + -0.7 364,254 - +2.1 364,266 + +0.2 364,266 + -0.4 364,266 + -0.6 364,266 + +2.2 364,266 + +1.4 364,266 + +3.8 364,266 + -0.8 364,266 + -0.4 364,266 + -1.6 364,266 + +0.3 364,266 + -1.7 364,266 + +1.2 364,266 + -0.4 364,267 - +0.1 364,267 - -0.9 364,267 - -1.1 364,267 - +3.1 364,267 - -0.1 364,267 - -0.4 364,267 - -1.0 364,267 - +2.3 364,267 - +0.4 364,267 - +0.5 364,267 - -0.3 364,267 - -0.9 364,267 - +1.9 364,270 + -0.3 364,270 + -1.8 364,270 + +0.7 364,270 + +1.4 364,270 + -0.2 364,270 + +0.7 364,270 + +0.6 364,270 + -1.0 364,270 + -0.4 364,270 + -0.6 364,271 - -0.6 364,271 - +2.4 364,271 - +3.5 364,311 + +0.1 364,311 + -0.1 364,311 + -1.5 364,312 - +0.6 364,312 - -0.7 364,338 + -0.5 364,339 - +0.6 364,339 - -1.0 364,403 + +0.1 364,403 + +2.1 364,407 + -1.8 364,407 + -0.0 364,408 - -0.3 364,426 + +0.3 364,427 - -0.3 364,429 + -0.1 364,429 + +0.2 364,429 + -0.2 364,430 - -0.4 364,430 - -0.1 364,520 + +2.1 364,650 + IAI47_01680 0.13 +0.4 364,651 - IAI47_01680 0.14 -0.1 364,651 - IAI47_01680 0.14 -0.3 364,651 - IAI47_01680 0.14 +1.6 364,870 + IAI47_01680 0.24 +2.4 364,870 + IAI47_01680 0.24 +0.4 364,870 + IAI47_01680 0.24 -0.7 364,871 - IAI47_01680 0.24 +0.2 364,871 - IAI47_01680 0.24 +0.4 364,871 - IAI47_01680 0.24 +0.3 364,871 - IAI47_01680 0.24 -0.3 364,874 + IAI47_01680 0.24 +0.6 364,874 + IAI47_01680 0.24 +0.8 364,874 + IAI47_01680 0.24 +1.4 364,874 + IAI47_01680 0.24 +0.1 364,874 + IAI47_01680 0.24 +2.7 364,874 + IAI47_01680 0.24 +0.6 364,874 + IAI47_01680 0.24 +1.0 364,875 - IAI47_01680 0.24 -1.2 364,875 - IAI47_01680 0.24 -0.6 364,918 - IAI47_01680 0.26 -1.0 364,918 - IAI47_01680 0.26 +1.7 364,923 + IAI47_01680 0.26 -0.4 364,923 + IAI47_01680 0.26 -0.9 364,923 + IAI47_01680 0.26 +1.1 364,923 + IAI47_01680 0.26 +1.5 364,931 + IAI47_01680 0.26 -0.4
Or see this region's nucleotide sequence