Strain Fitness in Pantoea sp. MT58 around IAI47_01510

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_01505 and IAI47_01510 are separated by 204 nucleotidesIAI47_01510 and IAI47_01515 are separated by 53 nucleotides IAI47_01505: IAI47_01505 - 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter, at 328,856 to 329,521 _01505 IAI47_01510: IAI47_01510 - sulfurtransferase TusA, at 329,726 to 329,977 _01510 IAI47_01515: IAI47_01515 - zinc/cadmium/mercury/lead-transporting ATPase, at 330,031 to 332,316 _01515 Position (kb) 329 330Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 328.768 kb on + strandat 328.768 kb on + strandat 328.782 kb on + strandat 328.782 kb on + strandat 328.783 kb on - strandat 328.783 kb on - strandat 328.783 kb on - strandat 328.783 kb on - strandat 328.783 kb on - strandat 328.790 kb on - strandat 328.790 kb on - strandat 328.790 kb on - strandat 328.790 kb on - strandat 328.792 kb on + strandat 328.793 kb on - strandat 328.836 kb on + strandat 328.837 kb on - strandat 328.837 kb on - strandat 328.837 kb on - strandat 328.837 kb on - strandat 328.846 kb on + strandat 328.847 kb on - strandat 328.922 kb on + strandat 328.923 kb on - strand, within IAI47_01505at 328.923 kb on - strand, within IAI47_01505at 328.923 kb on - strand, within IAI47_01505at 328.923 kb on - strand, within IAI47_01505at 328.923 kb on - strand, within IAI47_01505at 328.929 kb on + strand, within IAI47_01505at 328.957 kb on + strand, within IAI47_01505at 328.957 kb on + strand, within IAI47_01505at 328.958 kb on - strand, within IAI47_01505at 328.958 kb on - strand, within IAI47_01505at 328.958 kb on - strand, within IAI47_01505at 328.958 kb on - strand, within IAI47_01505at 328.958 kb on - strand, within IAI47_01505at 328.958 kb on - strand, within IAI47_01505at 328.958 kb on - strand, within IAI47_01505at 328.974 kb on + strand, within IAI47_01505at 328.974 kb on + strand, within IAI47_01505at 328.975 kb on - strand, within IAI47_01505at 329.012 kb on - strand, within IAI47_01505at 329.031 kb on + strand, within IAI47_01505at 329.031 kb on + strand, within IAI47_01505at 329.031 kb on + strand, within IAI47_01505at 329.032 kb on - strand, within IAI47_01505at 329.059 kb on + strand, within IAI47_01505at 329.059 kb on + strand, within IAI47_01505at 329.059 kb on + strand, within IAI47_01505at 329.068 kb on + strand, within IAI47_01505at 329.068 kb on + strand, within IAI47_01505at 329.068 kb on + strand, within IAI47_01505at 329.069 kb on - strand, within IAI47_01505at 329.099 kb on + strand, within IAI47_01505at 329.099 kb on + strand, within IAI47_01505at 329.099 kb on + strand, within IAI47_01505at 329.100 kb on - strand, within IAI47_01505at 329.100 kb on - strand, within IAI47_01505at 329.100 kb on - strand, within IAI47_01505at 329.135 kb on + strand, within IAI47_01505at 329.135 kb on + strand, within IAI47_01505at 329.135 kb on + strand, within IAI47_01505at 329.136 kb on - strand, within IAI47_01505at 329.136 kb on - strand, within IAI47_01505at 329.136 kb on - strand, within IAI47_01505at 329.136 kb on - strand, within IAI47_01505at 329.167 kb on - strand, within IAI47_01505at 329.167 kb on - strand, within IAI47_01505at 329.250 kb on + strand, within IAI47_01505at 329.251 kb on - strand, within IAI47_01505at 329.251 kb on - strand, within IAI47_01505at 329.251 kb on - strand, within IAI47_01505at 329.251 kb on - strand, within IAI47_01505at 329.251 kb on - strand, within IAI47_01505at 329.251 kb on - strand, within IAI47_01505at 329.271 kb on + strand, within IAI47_01505at 329.272 kb on - strand, within IAI47_01505at 329.272 kb on - strand, within IAI47_01505at 329.279 kb on - strand, within IAI47_01505at 329.279 kb on - strand, within IAI47_01505at 329.308 kb on + strand, within IAI47_01505at 329.308 kb on + strand, within IAI47_01505at 329.308 kb on + strand, within IAI47_01505at 329.309 kb on - strand, within IAI47_01505at 329.338 kb on + strand, within IAI47_01505at 329.338 kb on + strand, within IAI47_01505at 329.339 kb on - strand, within IAI47_01505at 329.339 kb on - strand, within IAI47_01505at 329.339 kb on - strand, within IAI47_01505at 329.368 kb on + strand, within IAI47_01505at 329.369 kb on - strand, within IAI47_01505at 329.436 kb on + strand, within IAI47_01505at 329.436 kb on + strand, within IAI47_01505at 329.436 kb on + strand, within IAI47_01505at 329.437 kb on - strand, within IAI47_01505at 329.437 kb on - strand, within IAI47_01505at 329.437 kb on - strand, within IAI47_01505at 329.437 kb on - strand, within IAI47_01505at 329.440 kb on + strand, within IAI47_01505at 329.440 kb on + strand, within IAI47_01505at 329.440 kb on + strand, within IAI47_01505at 329.440 kb on + strand, within IAI47_01505at 329.440 kb on + strand, within IAI47_01505at 329.440 kb on + strand, within IAI47_01505at 329.441 kb on - strand, within IAI47_01505at 329.441 kb on - strand, within IAI47_01505at 329.441 kb on - strand, within IAI47_01505at 329.441 kb on - strand, within IAI47_01505at 329.441 kb on - strand, within IAI47_01505at 329.521 kb on + strandat 329.521 kb on + strandat 329.521 kb on + strandat 329.521 kb on + strandat 329.521 kb on + strandat 329.522 kb on - strandat 329.534 kb on + strandat 329.535 kb on - strandat 329.617 kb on - strandat 329.633 kb on + strandat 329.633 kb on + strandat 329.633 kb on + strandat 329.633 kb on + strandat 329.634 kb on - strandat 329.634 kb on - strandat 329.644 kb on + strandat 329.692 kb on - strandat 329.696 kb on + strandat 329.696 kb on + strandat 329.696 kb on + strandat 329.696 kb on + strandat 329.725 kb on + strandat 330.000 kb on + strandat 330.001 kb on - strandat 330.007 kb on - strandat 330.135 kb on + strandat 330.135 kb on + strandat 330.136 kb on - strandat 330.177 kb on + strandat 330.342 kb on + strand, within IAI47_01515at 330.343 kb on - strand, within IAI47_01515at 330.345 kb on + strand, within IAI47_01515at 330.345 kb on + strand, within IAI47_01515at 330.345 kb on + strand, within IAI47_01515at 330.346 kb on - strand, within IAI47_01515at 330.346 kb on - strand, within IAI47_01515at 330.346 kb on - strand, within IAI47_01515at 330.346 kb on - strand, within IAI47_01515at 330.346 kb on - strand, within IAI47_01515at 330.346 kb on - strand, within IAI47_01515at 330.346 kb on - strand, within IAI47_01515at 330.405 kb on + strand, within IAI47_01515at 330.431 kb on + strand, within IAI47_01515at 330.637 kb on + strand, within IAI47_01515at 330.637 kb on + strand, within IAI47_01515at 330.637 kb on + strand, within IAI47_01515at 330.930 kb on + strand, within IAI47_01515at 330.930 kb on + strand, within IAI47_01515

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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328,768 + +0.4
328,768 + -0.0
328,782 + -0.6
328,782 + +3.0
328,783 - +0.9
328,783 - -1.0
328,783 - +0.1
328,783 - -0.5
328,783 - -0.5
328,790 - -1.0
328,790 - +1.5
328,790 - +1.9
328,790 - +2.0
328,792 + +1.0
328,793 - -1.8
328,836 + -0.9
328,837 - -0.8
328,837 - -0.2
328,837 - +0.5
328,837 - -0.2
328,846 + -0.2
328,847 - +3.0
328,922 + -1.1
328,923 - IAI47_01505 0.10 +0.5
328,923 - IAI47_01505 0.10 -1.4
328,923 - IAI47_01505 0.10 +1.8
328,923 - IAI47_01505 0.10 -0.2
328,923 - IAI47_01505 0.10 -0.4
328,929 + IAI47_01505 0.11 -1.3
328,957 + IAI47_01505 0.15 -1.0
328,957 + IAI47_01505 0.15 -0.9
328,958 - IAI47_01505 0.15 -1.0
328,958 - IAI47_01505 0.15 -0.6
328,958 - IAI47_01505 0.15 +0.4
328,958 - IAI47_01505 0.15 -1.2
328,958 - IAI47_01505 0.15 -1.4
328,958 - IAI47_01505 0.15 +4.3
328,958 - IAI47_01505 0.15 -2.6
328,974 + IAI47_01505 0.18 -0.0
328,974 + IAI47_01505 0.18 -0.8
328,975 - IAI47_01505 0.18 +0.3
329,012 - IAI47_01505 0.23 -0.6
329,031 + IAI47_01505 0.26 +1.1
329,031 + IAI47_01505 0.26 -0.9
329,031 + IAI47_01505 0.26 +0.4
329,032 - IAI47_01505 0.26 -0.2
329,059 + IAI47_01505 0.30 -1.6
329,059 + IAI47_01505 0.30 -1.9
329,059 + IAI47_01505 0.30 +0.2
329,068 + IAI47_01505 0.32 -1.4
329,068 + IAI47_01505 0.32 -1.7
329,068 + IAI47_01505 0.32 +0.3
329,069 - IAI47_01505 0.32 -0.0
329,099 + IAI47_01505 0.36 -2.7
329,099 + IAI47_01505 0.36 -2.3
329,099 + IAI47_01505 0.36 -1.2
329,100 - IAI47_01505 0.37 -1.2
329,100 - IAI47_01505 0.37 +0.4
329,100 - IAI47_01505 0.37 -2.2
329,135 + IAI47_01505 0.42 -0.6
329,135 + IAI47_01505 0.42 -2.0
329,135 + IAI47_01505 0.42 +0.4
329,136 - IAI47_01505 0.42 -1.2
329,136 - IAI47_01505 0.42 +3.3
329,136 - IAI47_01505 0.42 +2.0
329,136 - IAI47_01505 0.42 -2.4
329,167 - IAI47_01505 0.47 -1.0
329,167 - IAI47_01505 0.47 -2.0
329,250 + IAI47_01505 0.59 -0.7
329,251 - IAI47_01505 0.59 +1.1
329,251 - IAI47_01505 0.59 -0.5
329,251 - IAI47_01505 0.59 +0.6
329,251 - IAI47_01505 0.59 +0.3
329,251 - IAI47_01505 0.59 +0.5
329,251 - IAI47_01505 0.59 -1.6
329,271 + IAI47_01505 0.62 -1.7
329,272 - IAI47_01505 0.62 -0.9
329,272 - IAI47_01505 0.62 +1.8
329,279 - IAI47_01505 0.64 -1.1
329,279 - IAI47_01505 0.64 -0.8
329,308 + IAI47_01505 0.68 -0.3
329,308 + IAI47_01505 0.68 -0.7
329,308 + IAI47_01505 0.68 +0.1
329,309 - IAI47_01505 0.68 +0.4
329,338 + IAI47_01505 0.72 -0.2
329,338 + IAI47_01505 0.72 -1.6
329,339 - IAI47_01505 0.73 -0.0
329,339 - IAI47_01505 0.73 +0.2
329,339 - IAI47_01505 0.73 -0.7
329,368 + IAI47_01505 0.77 +4.0
329,369 - IAI47_01505 0.77 -1.8
329,436 + IAI47_01505 0.87 -2.7
329,436 + IAI47_01505 0.87 -0.3
329,436 + IAI47_01505 0.87 +1.9
329,437 - IAI47_01505 0.87 -1.7
329,437 - IAI47_01505 0.87 +3.4
329,437 - IAI47_01505 0.87 -0.0
329,437 - IAI47_01505 0.87 -1.6
329,440 + IAI47_01505 0.88 -0.9
329,440 + IAI47_01505 0.88 -0.6
329,440 + IAI47_01505 0.88 -2.2
329,440 + IAI47_01505 0.88 -0.6
329,440 + IAI47_01505 0.88 -0.0
329,440 + IAI47_01505 0.88 -0.6
329,441 - IAI47_01505 0.88 -0.8
329,441 - IAI47_01505 0.88 -0.6
329,441 - IAI47_01505 0.88 -0.3
329,441 - IAI47_01505 0.88 +2.0
329,441 - IAI47_01505 0.88 -0.0
329,521 + +0.6
329,521 + +1.5
329,521 + +0.3
329,521 + +2.3
329,521 + -1.5
329,522 - -1.8
329,534 + -2.7
329,535 - +1.2
329,617 - +1.4
329,633 + +1.8
329,633 + -1.0
329,633 + -1.4
329,633 + -0.7
329,634 - -0.6
329,634 - +1.9
329,644 + -1.2
329,692 - -1.6
329,696 + -0.3
329,696 + +0.5
329,696 + -0.8
329,696 + -1.5
329,725 + +0.8
330,000 + +0.3
330,001 - +0.3
330,007 - -0.6
330,135 + +0.5
330,135 + +2.8
330,136 - +0.3
330,177 + -0.0
330,342 + IAI47_01515 0.14 -1.2
330,343 - IAI47_01515 0.14 -1.5
330,345 + IAI47_01515 0.14 +0.0
330,345 + IAI47_01515 0.14 -0.6
330,345 + IAI47_01515 0.14 -0.5
330,346 - IAI47_01515 0.14 -0.2
330,346 - IAI47_01515 0.14 +0.6
330,346 - IAI47_01515 0.14 +0.0
330,346 - IAI47_01515 0.14 +0.5
330,346 - IAI47_01515 0.14 +2.0
330,346 - IAI47_01515 0.14 +0.6
330,346 - IAI47_01515 0.14 +5.0
330,405 + IAI47_01515 0.16 -0.2
330,431 + IAI47_01515 0.17 -0.8
330,637 + IAI47_01515 0.27 -1.0
330,637 + IAI47_01515 0.27 +2.7
330,637 + IAI47_01515 0.27 +2.1
330,930 + IAI47_01515 0.39 -0.9
330,930 + IAI47_01515 0.39 -0.4

Or see this region's nucleotide sequence