Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16895

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
3,866,573	+				-1.5
3,866,573	+				-0.3
3,866,638	-				-0.3
3,866,638	-				+0.8
3,866,650	-				-0.3
3,866,650	-				+0.3
3,866,650	-				+0.1
3,866,726	-		HSERO_RS16890	0.14	-0.0
3,866,728	+		HSERO_RS16890	0.14	+0.7
3,866,774	-		HSERO_RS16890	0.25	+0.3
3,866,901	-		HSERO_RS16890	0.55	+1.0
3,866,959	+		HSERO_RS16890	0.69	+1.4
3,867,600	-		HSERO_RS16895	0.33	-0.2
3,867,600	-		HSERO_RS16895	0.33	+0.2
3,867,662	-		HSERO_RS16895	0.39	-0.1
3,867,732	+		HSERO_RS16895	0.46	+0.1
3,867,876	+		HSERO_RS16895	0.60	-0.5
3,867,894	+		HSERO_RS16895	0.62	-0.0
3,867,939	+		HSERO_RS16895	0.66	-1.4
3,867,939	+				+0.7
3,867,957	-		HSERO_RS16895	0.68	-0.4
3,868,137	-		HSERO_RS16895	0.85	+1.6
3,868,218	-				+1.1
3,868,243	-				+0.7
3,868,475	+				-0.3
3,868,492	+				-0.2
3,869,075	-				-0.4
3,869,080	+				+1.0
3,869,098	-				-0.0
3,869,116	-				+0.7
3,869,191	+		HSERO_RS16905	0.26	+0.7
3,869,226	+		HSERO_RS16905	0.33	+0.7
3,869,236	+		HSERO_RS16905	0.35	-0.6