Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09525 and BWI76_RS09530 are separated by 117 nucleotides BWI76_RS09530 and BWI76_RS09535 overlap by 4 nucleotides BWI76_RS09535 and BWI76_RS09540 overlap by 4 nucleotides
BWI76_RS09525: BWI76_RS09525 - lipoprotein, at 1,992,934 to 1,993,449
_RS09525
BWI76_RS09530: BWI76_RS09530 - hypothetical protein, at 1,993,567 to 1,993,890
_RS09530
BWI76_RS09535: BWI76_RS09535 - N-acetylmuramoyl-L-alanine amidase amid, at 1,993,887 to 1,994,717
_RS09535
BWI76_RS09540: BWI76_RS09540 - hypothetical protein, at 1,994,714 to 1,995,727
_RS09540
Position (kb) 1993
1994
1995 Strain fitness (log2 ratio) -1
0
1 at 1992.983 kb on + strand at 1992.983 kb on - strand at 1993.013 kb on + strand, within BWI76_RS09525 at 1993.021 kb on - strand, within BWI76_RS09525 at 1993.026 kb on - strand, within BWI76_RS09525 at 1993.155 kb on + strand, within BWI76_RS09525 at 1993.417 kb on + strand at 1993.420 kb on - strand at 1993.425 kb on - strand at 1993.444 kb on - strand at 1993.498 kb on + strand at 1993.500 kb on + strand at 1993.533 kb on - strand at 1993.590 kb on + strand at 1993.597 kb on + strand at 1993.846 kb on + strand, within BWI76_RS09530 at 1993.990 kb on + strand, within BWI76_RS09535 at 1994.103 kb on - strand, within BWI76_RS09535 at 1994.244 kb on - strand, within BWI76_RS09535 at 1994.512 kb on + strand, within BWI76_RS09535 at 1994.582 kb on + strand, within BWI76_RS09535 at 1994.736 kb on + strand at 1994.934 kb on + strand, within BWI76_RS09540 at 1995.367 kb on + strand, within BWI76_RS09540 at 1995.592 kb on - strand, within BWI76_RS09540
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,992,983 + -1.2 1,992,983 - +0.3 1,993,013 + BWI76_RS09525 0.15 -0.0 1,993,021 - BWI76_RS09525 0.17 -0.6 1,993,026 - BWI76_RS09525 0.18 +0.4 1,993,155 + BWI76_RS09525 0.43 +0.3 1,993,417 + -1.4 1,993,420 - +0.2 1,993,425 - +0.1 1,993,444 - +0.3 1,993,498 + +0.3 1,993,500 + +0.1 1,993,533 - +0.4 1,993,590 + -0.8 1,993,597 + +0.6 1,993,846 + BWI76_RS09530 0.86 -0.0 1,993,990 + BWI76_RS09535 0.12 +0.2 1,994,103 - BWI76_RS09535 0.26 -0.2 1,994,244 - BWI76_RS09535 0.43 +0.2 1,994,512 + BWI76_RS09535 0.75 -0.3 1,994,582 + BWI76_RS09535 0.84 -0.2 1,994,736 + -0.2 1,994,934 + BWI76_RS09540 0.22 +0.1 1,995,367 + BWI76_RS09540 0.64 -0.4 1,995,592 - BWI76_RS09540 0.87 -0.1
Or see this region's nucleotide sequence