Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04945 and BWI76_RS04950 are separated by 80 nucleotides BWI76_RS04950 and BWI76_RS04955 are separated by 203 nucleotides BWI76_RS04955 and BWI76_RS04960 are separated by 50 nucleotides
BWI76_RS04945: BWI76_RS04945 - multicopper oxidase, at 1,037,326 to 1,038,909
_RS04945
BWI76_RS04950: BWI76_RS04950 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 1,038,990 to 1,041,380
_RS04950
BWI76_RS04955: BWI76_RS04955 - hypoxanthine phosphoribosyltransferase, at 1,041,584 to 1,042,120
_RS04955
BWI76_RS04960: BWI76_RS04960 - carbonate dehydratase, at 1,042,171 to 1,042,833
_RS04960
Position (kb)
1038
1039
1040
1041
1042 Strain fitness (log2 ratio)
-1
0
1
2 at 1038.283 kb on + strand, within BWI76_RS04945 at 1038.350 kb on + strand, within BWI76_RS04945 at 1038.540 kb on + strand, within BWI76_RS04945 at 1038.548 kb on - strand, within BWI76_RS04945 at 1038.650 kb on - strand, within BWI76_RS04945 at 1039.097 kb on + strand at 1039.258 kb on + strand, within BWI76_RS04950 at 1039.310 kb on - strand, within BWI76_RS04950 at 1039.373 kb on - strand, within BWI76_RS04950 at 1039.639 kb on + strand, within BWI76_RS04950 at 1040.046 kb on - strand, within BWI76_RS04950 at 1040.075 kb on - strand, within BWI76_RS04950 at 1040.286 kb on + strand, within BWI76_RS04950 at 1040.464 kb on - strand, within BWI76_RS04950 at 1040.694 kb on - strand, within BWI76_RS04950 at 1040.852 kb on - strand, within BWI76_RS04950 at 1040.873 kb on - strand, within BWI76_RS04950 at 1041.073 kb on - strand, within BWI76_RS04950 at 1041.210 kb on - strand at 1041.258 kb on - strand at 1041.498 kb on + strand at 1041.749 kb on + strand, within BWI76_RS04955 at 1041.801 kb on - strand, within BWI76_RS04955 at 1042.160 kb on - strand at 1042.160 kb on - strand at 1042.279 kb on + strand, within BWI76_RS04960 at 1042.303 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,038,283 + BWI76_RS04945 0.60 +0.2 1,038,350 + BWI76_RS04945 0.65 -0.4 1,038,540 + BWI76_RS04945 0.77 +0.5 1,038,548 - BWI76_RS04945 0.77 +2.1 1,038,650 - BWI76_RS04945 0.84 -0.5 1,039,097 + +0.6 1,039,258 + BWI76_RS04950 0.11 +1.0 1,039,310 - BWI76_RS04950 0.13 -0.3 1,039,373 - BWI76_RS04950 0.16 -0.5 1,039,639 + BWI76_RS04950 0.27 -0.0 1,040,046 - BWI76_RS04950 0.44 +0.1 1,040,075 - BWI76_RS04950 0.45 +0.8 1,040,286 + BWI76_RS04950 0.54 -0.1 1,040,464 - BWI76_RS04950 0.62 -0.1 1,040,694 - BWI76_RS04950 0.71 +0.3 1,040,852 - BWI76_RS04950 0.78 +0.4 1,040,873 - BWI76_RS04950 0.79 +0.4 1,041,073 - BWI76_RS04950 0.87 +0.5 1,041,210 - -0.2 1,041,258 - -0.2 1,041,498 + -0.7 1,041,749 + BWI76_RS04955 0.31 +0.2 1,041,801 - BWI76_RS04955 0.40 -1.2 1,042,160 - -0.0 1,042,160 - +0.4 1,042,279 + BWI76_RS04960 0.16 +0.2 1,042,303 - -0.9
Or see this region's nucleotide sequence