Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04210 and BWI76_RS04215 are separated by 12 nucleotides BWI76_RS04215 and BWI76_RS04220 overlap by 1 nucleotides BWI76_RS04220 and BWI76_RS04225 are separated by 57 nucleotides
BWI76_RS04210: BWI76_RS04210 - hypothetical protein, at 866,056 to 866,529
_RS04210
BWI76_RS04215: BWI76_RS04215 - DNA-binding response regulator, at 866,542 to 867,231
_RS04215
BWI76_RS04220: BWI76_RS04220 - two-component sensor histidine kinase, at 867,231 to 868,655
_RS04220
BWI76_RS04225: BWI76_RS04225 - cell envelope integrity protein CreD, at 868,713 to 870,071
_RS04225
Position (kb) 867
868
869 Strain fitness (log2 ratio) -1
0
1
2 at 866.247 kb on + strand, within BWI76_RS04210 at 866.258 kb on + strand, within BWI76_RS04210 at 866.279 kb on + strand, within BWI76_RS04210 at 866.279 kb on + strand, within BWI76_RS04210 at 866.287 kb on - strand, within BWI76_RS04210 at 866.551 kb on + strand at 866.598 kb on + strand at 866.606 kb on - strand at 866.606 kb on - strand at 866.734 kb on - strand, within BWI76_RS04215 at 866.786 kb on - strand, within BWI76_RS04215 at 866.786 kb on - strand, within BWI76_RS04215 at 866.803 kb on - strand, within BWI76_RS04215 at 867.088 kb on + strand, within BWI76_RS04215 at 867.103 kb on + strand, within BWI76_RS04215 at 867.132 kb on - strand, within BWI76_RS04215 at 867.215 kb on + strand at 867.215 kb on + strand at 867.356 kb on + strand at 867.533 kb on + strand, within BWI76_RS04220 at 867.541 kb on - strand, within BWI76_RS04220 at 867.541 kb on - strand, within BWI76_RS04220 at 867.707 kb on + strand, within BWI76_RS04220 at 867.714 kb on + strand, within BWI76_RS04220 at 867.775 kb on + strand, within BWI76_RS04220 at 867.928 kb on + strand, within BWI76_RS04220 at 867.928 kb on + strand, within BWI76_RS04220 at 867.936 kb on - strand, within BWI76_RS04220 at 867.936 kb on - strand, within BWI76_RS04220 at 867.936 kb on - strand, within BWI76_RS04220 at 867.948 kb on + strand, within BWI76_RS04220 at 867.970 kb on + strand, within BWI76_RS04220 at 867.970 kb on + strand, within BWI76_RS04220 at 868.189 kb on + strand, within BWI76_RS04220 at 868.269 kb on + strand, within BWI76_RS04220 at 868.438 kb on + strand, within BWI76_RS04220 at 868.679 kb on + strand at 868.749 kb on + strand at 868.759 kb on + strand at 868.843 kb on - strand at 868.848 kb on - strand at 869.085 kb on - strand, within BWI76_RS04225 at 869.121 kb on + strand, within BWI76_RS04225 at 869.144 kb on + strand, within BWI76_RS04225 at 869.336 kb on + strand, within BWI76_RS04225 at 869.456 kb on - strand, within BWI76_RS04225 at 869.486 kb on + strand, within BWI76_RS04225 at 869.580 kb on + strand, within BWI76_RS04225
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 866,247 + BWI76_RS04210 0.40 +2.2 866,258 + BWI76_RS04210 0.43 -0.5 866,279 + BWI76_RS04210 0.47 +0.1 866,279 + BWI76_RS04210 0.47 -0.3 866,287 - BWI76_RS04210 0.49 +0.1 866,551 + +0.1 866,598 + -0.8 866,606 - -0.0 866,606 - -0.6 866,734 - BWI76_RS04215 0.28 -0.4 866,786 - BWI76_RS04215 0.35 -0.7 866,786 - BWI76_RS04215 0.35 +0.3 866,803 - BWI76_RS04215 0.38 +0.0 867,088 + BWI76_RS04215 0.79 -0.4 867,103 + BWI76_RS04215 0.81 -0.4 867,132 - BWI76_RS04215 0.86 +2.2 867,215 + +0.1 867,215 + -0.2 867,356 + +0.1 867,533 + BWI76_RS04220 0.21 +0.8 867,541 - BWI76_RS04220 0.22 -0.7 867,541 - BWI76_RS04220 0.22 -0.3 867,707 + BWI76_RS04220 0.33 -0.1 867,714 + BWI76_RS04220 0.34 -0.3 867,775 + BWI76_RS04220 0.38 -0.6 867,928 + BWI76_RS04220 0.49 -0.0 867,928 + BWI76_RS04220 0.49 -0.2 867,936 - BWI76_RS04220 0.49 +0.1 867,936 - BWI76_RS04220 0.49 -0.5 867,936 - BWI76_RS04220 0.49 -0.0 867,948 + BWI76_RS04220 0.50 -0.2 867,970 + BWI76_RS04220 0.52 +0.2 867,970 + BWI76_RS04220 0.52 -0.1 868,189 + BWI76_RS04220 0.67 -0.3 868,269 + BWI76_RS04220 0.73 +0.3 868,438 + BWI76_RS04220 0.85 -0.0 868,679 + -0.4 868,749 + -0.5 868,759 + +0.2 868,843 - +0.6 868,848 - +1.1 869,085 - BWI76_RS04225 0.27 +0.3 869,121 + BWI76_RS04225 0.30 -1.2 869,144 + BWI76_RS04225 0.32 -0.9 869,336 + BWI76_RS04225 0.46 -0.2 869,456 - BWI76_RS04225 0.55 +0.9 869,486 + BWI76_RS04225 0.57 -0.0 869,580 + BWI76_RS04225 0.64 -0.5
Or see this region's nucleotide sequence