Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22770

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS22765 and ABZR87_RS22770 are separated by 10 nucleotidesABZR87_RS22770 and ABZR87_RS22775 are separated by 14 nucleotidesABZR87_RS22775 and ABZR87_RS22780 are separated by 15 nucleotides ABZR87_RS22765: ABZR87_RS22765 - urea ABC transporter permease subunit UrtB, at 1,468,927 to 1,469,844 _RS22765 ABZR87_RS22770: ABZR87_RS22770 - urea ABC transporter permease subunit UrtC, at 1,469,855 to 1,470,991 _RS22770 ABZR87_RS22775: ABZR87_RS22775 - urea ABC transporter ATP-binding protein UrtD, at 1,471,006 to 1,471,767 _RS22775 ABZR87_RS22780: ABZR87_RS22780 - urea ABC transporter ATP-binding subunit UrtE, at 1,471,783 to 1,472,472 _RS22780 Position (kb) 1469 1470 1471Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1469.089 kb on + strand, within ABZR87_RS22765at 1469.090 kb on - strand, within ABZR87_RS22765at 1469.098 kb on + strand, within ABZR87_RS22765at 1469.098 kb on + strand, within ABZR87_RS22765at 1469.099 kb on - strand, within ABZR87_RS22765at 1469.126 kb on - strand, within ABZR87_RS22765at 1469.126 kb on - strand, within ABZR87_RS22765at 1469.147 kb on - strand, within ABZR87_RS22765at 1469.147 kb on - strand, within ABZR87_RS22765at 1469.147 kb on - strand, within ABZR87_RS22765at 1469.149 kb on + strand, within ABZR87_RS22765at 1469.149 kb on + strand, within ABZR87_RS22765at 1469.150 kb on - strand, within ABZR87_RS22765at 1469.150 kb on - strand, within ABZR87_RS22765at 1469.596 kb on - strand, within ABZR87_RS22765at 1469.596 kb on - strand, within ABZR87_RS22765at 1469.596 kb on - strand, within ABZR87_RS22765at 1469.635 kb on + strand, within ABZR87_RS22765at 1469.635 kb on + strand, within ABZR87_RS22765at 1469.635 kb on + strand, within ABZR87_RS22765at 1469.635 kb on + strand, within ABZR87_RS22765at 1469.635 kb on + strand, within ABZR87_RS22765at 1469.636 kb on - strand, within ABZR87_RS22765at 1469.636 kb on - strand, within ABZR87_RS22765at 1469.636 kb on - strand, within ABZR87_RS22765at 1469.636 kb on - strand, within ABZR87_RS22765at 1469.636 kb on - strand, within ABZR87_RS22765at 1469.636 kb on - strand, within ABZR87_RS22765at 1469.637 kb on + strand, within ABZR87_RS22765at 1469.637 kb on + strand, within ABZR87_RS22765at 1469.842 kb on + strandat 1469.842 kb on + strandat 1469.842 kb on + strandat 1469.843 kb on - strandat 1469.880 kb on + strandat 1469.985 kb on - strand, within ABZR87_RS22770at 1469.985 kb on - strand, within ABZR87_RS22770at 1469.993 kb on + strand, within ABZR87_RS22770at 1469.994 kb on - strand, within ABZR87_RS22770at 1470.314 kb on + strand, within ABZR87_RS22770at 1470.314 kb on + strand, within ABZR87_RS22770at 1470.314 kb on + strand, within ABZR87_RS22770at 1470.314 kb on + strand, within ABZR87_RS22770at 1470.315 kb on - strand, within ABZR87_RS22770at 1470.315 kb on - strand, within ABZR87_RS22770at 1470.315 kb on - strand, within ABZR87_RS22770at 1470.465 kb on - strand, within ABZR87_RS22770at 1470.465 kb on - strand, within ABZR87_RS22770at 1470.587 kb on + strand, within ABZR87_RS22770at 1470.770 kb on + strand, within ABZR87_RS22770at 1470.770 kb on + strand, within ABZR87_RS22770at 1470.770 kb on + strand, within ABZR87_RS22770at 1470.804 kb on - strand, within ABZR87_RS22770at 1470.804 kb on - strand, within ABZR87_RS22770at 1470.804 kb on - strand, within ABZR87_RS22770at 1470.804 kb on - strand, within ABZR87_RS22770at 1470.872 kb on + strand, within ABZR87_RS22770at 1470.872 kb on + strand, within ABZR87_RS22770at 1470.873 kb on - strand, within ABZR87_RS22770at 1470.873 kb on - strand, within ABZR87_RS22770at 1470.873 kb on - strand, within ABZR87_RS22770at 1470.873 kb on - strand, within ABZR87_RS22770at 1470.873 kb on - strand, within ABZR87_RS22770at 1470.900 kb on - strandat 1470.989 kb on + strandat 1470.990 kb on - strandat 1471.108 kb on + strand, within ABZR87_RS22775at 1471.108 kb on + strand, within ABZR87_RS22775at 1471.108 kb on + strand, within ABZR87_RS22775at 1471.108 kb on + strand, within ABZR87_RS22775at 1471.108 kb on + strand, within ABZR87_RS22775at 1471.109 kb on - strand, within ABZR87_RS22775at 1471.109 kb on - strand, within ABZR87_RS22775at 1471.303 kb on + strand, within ABZR87_RS22775at 1471.304 kb on - strand, within ABZR87_RS22775at 1471.753 kb on + strandat 1471.753 kb on + strandat 1471.753 kb on + strandat 1471.754 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
remove
1,469,089 + ABZR87_RS22765 0.18 +1.9
1,469,090 - ABZR87_RS22765 0.18 -0.9
1,469,098 + ABZR87_RS22765 0.19 +0.4
1,469,098 + ABZR87_RS22765 0.19 +1.5
1,469,099 - ABZR87_RS22765 0.19 +0.1
1,469,126 - ABZR87_RS22765 0.22 -0.4
1,469,126 - ABZR87_RS22765 0.22 +0.2
1,469,147 - ABZR87_RS22765 0.24 -1.0
1,469,147 - ABZR87_RS22765 0.24 -0.7
1,469,147 - ABZR87_RS22765 0.24 +2.9
1,469,149 + ABZR87_RS22765 0.24 +0.4
1,469,149 + ABZR87_RS22765 0.24 +0.1
1,469,150 - ABZR87_RS22765 0.24 +0.3
1,469,150 - ABZR87_RS22765 0.24 -0.0
1,469,596 - ABZR87_RS22765 0.73 -0.6
1,469,596 - ABZR87_RS22765 0.73 +0.9
1,469,596 - ABZR87_RS22765 0.73 -0.9
1,469,635 + ABZR87_RS22765 0.77 -1.2
1,469,635 + ABZR87_RS22765 0.77 -0.1
1,469,635 + ABZR87_RS22765 0.77 -0.1
1,469,635 + ABZR87_RS22765 0.77 -1.7
1,469,635 + ABZR87_RS22765 0.77 +2.9
1,469,636 - ABZR87_RS22765 0.77 -2.0
1,469,636 - ABZR87_RS22765 0.77 -0.4
1,469,636 - ABZR87_RS22765 0.77 +0.3
1,469,636 - ABZR87_RS22765 0.77 +1.3
1,469,636 - ABZR87_RS22765 0.77 +1.5
1,469,636 - ABZR87_RS22765 0.77 -0.3
1,469,637 + ABZR87_RS22765 0.77 +0.6
1,469,637 + ABZR87_RS22765 0.77 +0.3
1,469,842 + +3.1
1,469,842 + -0.3
1,469,842 + -1.4
1,469,843 - +0.7
1,469,880 + +0.6
1,469,985 - ABZR87_RS22770 0.11 -0.5
1,469,985 - ABZR87_RS22770 0.11 +1.2
1,469,993 + ABZR87_RS22770 0.12 -0.4
1,469,994 - ABZR87_RS22770 0.12 +0.2
1,470,314 + ABZR87_RS22770 0.40 -0.5
1,470,314 + ABZR87_RS22770 0.40 -1.6
1,470,314 + ABZR87_RS22770 0.40 +0.0
1,470,314 + ABZR87_RS22770 0.40 +0.4
1,470,315 - ABZR87_RS22770 0.40 -2.6
1,470,315 - ABZR87_RS22770 0.40 -0.7
1,470,315 - ABZR87_RS22770 0.40 -1.3
1,470,465 - ABZR87_RS22770 0.54 -0.1
1,470,465 - ABZR87_RS22770 0.54 -0.5
1,470,587 + ABZR87_RS22770 0.64 +0.5
1,470,770 + ABZR87_RS22770 0.80 -1.4
1,470,770 + ABZR87_RS22770 0.80 -2.0
1,470,770 + ABZR87_RS22770 0.80 +0.7
1,470,804 - ABZR87_RS22770 0.83 -0.5
1,470,804 - ABZR87_RS22770 0.83 +0.6
1,470,804 - ABZR87_RS22770 0.83 -0.9
1,470,804 - ABZR87_RS22770 0.83 -1.2
1,470,872 + ABZR87_RS22770 0.89 -0.7
1,470,872 + ABZR87_RS22770 0.89 +1.9
1,470,873 - ABZR87_RS22770 0.90 +0.0
1,470,873 - ABZR87_RS22770 0.90 -0.1
1,470,873 - ABZR87_RS22770 0.90 -0.3
1,470,873 - ABZR87_RS22770 0.90 +0.7
1,470,873 - ABZR87_RS22770 0.90 -1.4
1,470,900 - -2.5
1,470,989 + -0.9
1,470,990 - -0.8
1,471,108 + ABZR87_RS22775 0.13 -0.6
1,471,108 + ABZR87_RS22775 0.13 +0.0
1,471,108 + ABZR87_RS22775 0.13 -0.4
1,471,108 + ABZR87_RS22775 0.13 +0.4
1,471,108 + ABZR87_RS22775 0.13 -0.0
1,471,109 - ABZR87_RS22775 0.14 -2.7
1,471,109 - ABZR87_RS22775 0.14 -2.4
1,471,303 + ABZR87_RS22775 0.39 -0.8
1,471,304 - ABZR87_RS22775 0.39 -1.3
1,471,753 + +1.1
1,471,753 + -0.6
1,471,753 + +3.9
1,471,754 - +1.7

Or see this region's nucleotide sequence