Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20480 and ABZR87_RS20485 are separated by 323 nucleotides ABZR87_RS20485 and ABZR87_RS20490 are separated by 167 nucleotides
ABZR87_RS20480: ABZR87_RS20480 - LysR family transcriptional regulator, at 982,681 to 983,547
_RS20480
ABZR87_RS20485: ABZR87_RS20485 - membrane protein, at 983,871 to 985,574
_RS20485
ABZR87_RS20490: ABZR87_RS20490 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 985,742 to 988,327
_RS20490
Position (kb) 983
984
985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 983.142 kb on - strand, within ABZR87_RS20480 at 983.243 kb on + strand, within ABZR87_RS20480 at 983.243 kb on + strand, within ABZR87_RS20480 at 983.243 kb on + strand, within ABZR87_RS20480 at 983.244 kb on - strand, within ABZR87_RS20480 at 983.403 kb on - strand, within ABZR87_RS20480 at 983.403 kb on - strand, within ABZR87_RS20480 at 983.420 kb on + strand, within ABZR87_RS20480 at 983.561 kb on + strand at 983.561 kb on - strand at 983.561 kb on - strand at 983.571 kb on + strand at 983.605 kb on + strand at 983.605 kb on + strand at 983.605 kb on + strand at 983.605 kb on + strand at 983.605 kb on + strand at 983.662 kb on + strand at 983.662 kb on + strand at 983.663 kb on - strand at 983.663 kb on - strand at 983.663 kb on - strand at 983.663 kb on - strand at 983.663 kb on - strand at 983.663 kb on - strand at 983.675 kb on + strand at 983.675 kb on + strand at 983.676 kb on - strand at 983.846 kb on + strand at 983.847 kb on - strand at 983.847 kb on - strand at 983.847 kb on - strand at 983.893 kb on + strand at 983.893 kb on + strand at 983.893 kb on + strand at 983.903 kb on + strand at 984.023 kb on + strand at 984.023 kb on + strand at 984.074 kb on + strand, within ABZR87_RS20485 at 984.074 kb on + strand, within ABZR87_RS20485 at 984.075 kb on - strand, within ABZR87_RS20485 at 984.075 kb on - strand, within ABZR87_RS20485 at 984.075 kb on - strand, within ABZR87_RS20485 at 984.078 kb on + strand, within ABZR87_RS20485 at 984.078 kb on + strand, within ABZR87_RS20485 at 984.079 kb on - strand, within ABZR87_RS20485 at 984.079 kb on - strand, within ABZR87_RS20485 at 984.079 kb on - strand, within ABZR87_RS20485 at 984.175 kb on + strand, within ABZR87_RS20485 at 984.176 kb on - strand, within ABZR87_RS20485 at 984.186 kb on + strand, within ABZR87_RS20485 at 984.186 kb on + strand, within ABZR87_RS20485 at 984.411 kb on - strand, within ABZR87_RS20485 at 984.411 kb on - strand, within ABZR87_RS20485 at 984.571 kb on - strand, within ABZR87_RS20485 at 984.571 kb on - strand, within ABZR87_RS20485 at 984.571 kb on - strand, within ABZR87_RS20485 at 984.645 kb on + strand, within ABZR87_RS20485 at 984.645 kb on + strand, within ABZR87_RS20485 at 984.646 kb on - strand, within ABZR87_RS20485 at 984.647 kb on + strand, within ABZR87_RS20485 at 984.648 kb on - strand, within ABZR87_RS20485 at 984.648 kb on - strand, within ABZR87_RS20485 at 984.648 kb on - strand, within ABZR87_RS20485 at 984.687 kb on + strand, within ABZR87_RS20485 at 984.688 kb on - strand, within ABZR87_RS20485 at 984.688 kb on - strand, within ABZR87_RS20485 at 984.768 kb on + strand, within ABZR87_RS20485 at 984.769 kb on - strand, within ABZR87_RS20485 at 984.850 kb on - strand, within ABZR87_RS20485 at 984.870 kb on + strand, within ABZR87_RS20485 at 984.870 kb on + strand, within ABZR87_RS20485 at 984.870 kb on + strand, within ABZR87_RS20485 at 984.871 kb on - strand, within ABZR87_RS20485 at 984.871 kb on - strand, within ABZR87_RS20485 at 984.871 kb on - strand, within ABZR87_RS20485 at 984.945 kb on + strand, within ABZR87_RS20485 at 984.945 kb on + strand, within ABZR87_RS20485 at 984.946 kb on - strand, within ABZR87_RS20485 at 984.946 kb on - strand, within ABZR87_RS20485 at 984.946 kb on - strand, within ABZR87_RS20485 at 984.946 kb on - strand, within ABZR87_RS20485 at 984.958 kb on + strand, within ABZR87_RS20485 at 984.959 kb on - strand, within ABZR87_RS20485 at 984.975 kb on + strand, within ABZR87_RS20485 at 984.975 kb on + strand, within ABZR87_RS20485 at 984.975 kb on + strand, within ABZR87_RS20485 at 984.975 kb on + strand, within ABZR87_RS20485 at 984.976 kb on - strand, within ABZR87_RS20485 at 984.976 kb on - strand, within ABZR87_RS20485 at 984.976 kb on - strand, within ABZR87_RS20485 at 984.976 kb on - strand, within ABZR87_RS20485 at 984.976 kb on - strand, within ABZR87_RS20485 at 984.976 kb on - strand, within ABZR87_RS20485 at 984.976 kb on - strand, within ABZR87_RS20485 at 984.976 kb on - strand, within ABZR87_RS20485 at 984.981 kb on + strand, within ABZR87_RS20485 at 984.981 kb on + strand, within ABZR87_RS20485 at 984.981 kb on + strand, within ABZR87_RS20485 at 984.981 kb on + strand, within ABZR87_RS20485 at 984.981 kb on + strand, within ABZR87_RS20485 at 984.981 kb on + strand, within ABZR87_RS20485 at 984.982 kb on - strand, within ABZR87_RS20485 at 984.982 kb on - strand, within ABZR87_RS20485 at 984.982 kb on - strand, within ABZR87_RS20485 at 984.982 kb on - strand, within ABZR87_RS20485 at 984.982 kb on - strand, within ABZR87_RS20485 at 985.101 kb on + strand, within ABZR87_RS20485 at 985.102 kb on - strand, within ABZR87_RS20485 at 985.209 kb on + strand, within ABZR87_RS20485 at 985.209 kb on + strand, within ABZR87_RS20485 at 985.213 kb on - strand, within ABZR87_RS20485 at 985.372 kb on - strand, within ABZR87_RS20485 at 985.425 kb on + strand at 985.425 kb on + strand at 985.425 kb on - strand at 985.426 kb on - strand at 985.426 kb on - strand at 985.426 kb on - strand at 985.518 kb on + strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.546 kb on - strand at 985.743 kb on + strand at 985.743 kb on + strand at 985.743 kb on + strand at 985.744 kb on - strand at 985.744 kb on - strand at 985.744 kb on - strand at 985.744 kb on - strand at 985.800 kb on + strand at 985.800 kb on + strand at 985.800 kb on + strand at 985.800 kb on + strand at 985.801 kb on - strand at 985.801 kb on - strand at 985.801 kb on - strand at 985.804 kb on + strand at 985.851 kb on + strand at 985.851 kb on + strand at 985.852 kb on - strand at 985.917 kb on + strand at 985.918 kb on - strand at 985.954 kb on + strand at 985.954 kb on + strand at 986.038 kb on + strand, within ABZR87_RS20490 at 986.039 kb on - strand, within ABZR87_RS20490 at 986.067 kb on + strand, within ABZR87_RS20490 at 986.068 kb on - strand, within ABZR87_RS20490 at 986.329 kb on - strand, within ABZR87_RS20490 at 986.469 kb on + strand, within ABZR87_RS20490 at 986.469 kb on + strand, within ABZR87_RS20490 at 986.469 kb on + strand, within ABZR87_RS20490
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 983,142 - ABZR87_RS20480 0.53 -0.4 983,243 + ABZR87_RS20480 0.65 +0.9 983,243 + ABZR87_RS20480 0.65 -0.8 983,243 + ABZR87_RS20480 0.65 +0.4 983,244 - ABZR87_RS20480 0.65 +0.6 983,403 - ABZR87_RS20480 0.83 -1.3 983,403 - ABZR87_RS20480 0.83 -0.2 983,420 + ABZR87_RS20480 0.85 -0.3 983,561 + +1.8 983,561 - -0.3 983,561 - -1.3 983,571 + -0.5 983,605 + +0.2 983,605 + -1.4 983,605 + -0.4 983,605 + -1.5 983,605 + +0.1 983,662 + -0.3 983,662 + +0.3 983,663 - +1.6 983,663 - +1.2 983,663 - -0.7 983,663 - +3.9 983,663 - -1.4 983,663 - -0.3 983,675 + +1.3 983,675 + +0.6 983,676 - +0.1 983,846 + +1.1 983,847 - +0.0 983,847 - -0.1 983,847 - -1.8 983,893 + -0.7 983,893 + +0.5 983,893 + +0.3 983,903 + +0.6 984,023 + -2.7 984,023 + -1.1 984,074 + ABZR87_RS20485 0.12 -0.9 984,074 + ABZR87_RS20485 0.12 +0.6 984,075 - ABZR87_RS20485 0.12 -1.2 984,075 - ABZR87_RS20485 0.12 -1.9 984,075 - ABZR87_RS20485 0.12 +1.5 984,078 + ABZR87_RS20485 0.12 +0.3 984,078 + ABZR87_RS20485 0.12 +1.1 984,079 - ABZR87_RS20485 0.12 -0.7 984,079 - ABZR87_RS20485 0.12 +1.9 984,079 - ABZR87_RS20485 0.12 -0.7 984,175 + ABZR87_RS20485 0.18 +4.9 984,176 - ABZR87_RS20485 0.18 -0.8 984,186 + ABZR87_RS20485 0.18 -0.9 984,186 + ABZR87_RS20485 0.18 -0.9 984,411 - ABZR87_RS20485 0.32 +0.5 984,411 - ABZR87_RS20485 0.32 -1.2 984,571 - ABZR87_RS20485 0.41 -0.9 984,571 - ABZR87_RS20485 0.41 -1.5 984,571 - ABZR87_RS20485 0.41 +0.4 984,645 + ABZR87_RS20485 0.45 -1.2 984,645 + ABZR87_RS20485 0.45 -1.8 984,646 - ABZR87_RS20485 0.45 -1.9 984,647 + ABZR87_RS20485 0.46 +0.7 984,648 - ABZR87_RS20485 0.46 -0.3 984,648 - ABZR87_RS20485 0.46 -1.4 984,648 - ABZR87_RS20485 0.46 -0.1 984,687 + ABZR87_RS20485 0.48 -2.7 984,688 - ABZR87_RS20485 0.48 -1.1 984,688 - ABZR87_RS20485 0.48 -1.0 984,768 + ABZR87_RS20485 0.53 +0.2 984,769 - ABZR87_RS20485 0.53 -0.4 984,850 - ABZR87_RS20485 0.57 -0.3 984,870 + ABZR87_RS20485 0.59 -0.4 984,870 + ABZR87_RS20485 0.59 -0.0 984,870 + ABZR87_RS20485 0.59 +0.7 984,871 - ABZR87_RS20485 0.59 +1.0 984,871 - ABZR87_RS20485 0.59 -0.4 984,871 - ABZR87_RS20485 0.59 -0.6 984,945 + ABZR87_RS20485 0.63 -1.9 984,945 + ABZR87_RS20485 0.63 +0.9 984,946 - ABZR87_RS20485 0.63 -1.1 984,946 - ABZR87_RS20485 0.63 +2.2 984,946 - ABZR87_RS20485 0.63 +0.6 984,946 - ABZR87_RS20485 0.63 +1.7 984,958 + ABZR87_RS20485 0.64 -1.7 984,959 - ABZR87_RS20485 0.64 -0.2 984,975 + ABZR87_RS20485 0.65 +0.6 984,975 + ABZR87_RS20485 0.65 +1.2 984,975 + ABZR87_RS20485 0.65 -0.4 984,975 + ABZR87_RS20485 0.65 +0.7 984,976 - ABZR87_RS20485 0.65 -0.7 984,976 - ABZR87_RS20485 0.65 +0.8 984,976 - ABZR87_RS20485 0.65 -1.9 984,976 - ABZR87_RS20485 0.65 -0.8 984,976 - ABZR87_RS20485 0.65 +1.1 984,976 - ABZR87_RS20485 0.65 +1.0 984,976 - ABZR87_RS20485 0.65 -0.1 984,976 - ABZR87_RS20485 0.65 -2.3 984,981 + ABZR87_RS20485 0.65 +0.3 984,981 + ABZR87_RS20485 0.65 +0.7 984,981 + ABZR87_RS20485 0.65 -1.3 984,981 + ABZR87_RS20485 0.65 -0.7 984,981 + ABZR87_RS20485 0.65 +1.3 984,981 + ABZR87_RS20485 0.65 -0.6 984,982 - ABZR87_RS20485 0.65 -0.9 984,982 - ABZR87_RS20485 0.65 +1.2 984,982 - ABZR87_RS20485 0.65 -0.5 984,982 - ABZR87_RS20485 0.65 +0.2 984,982 - ABZR87_RS20485 0.65 -0.7 985,101 + ABZR87_RS20485 0.72 +0.5 985,102 - ABZR87_RS20485 0.72 -0.6 985,209 + ABZR87_RS20485 0.79 +1.1 985,209 + ABZR87_RS20485 0.79 -1.0 985,213 - ABZR87_RS20485 0.79 -1.0 985,372 - ABZR87_RS20485 0.88 -0.7 985,425 + +0.0 985,425 + +1.4 985,425 - +1.1 985,426 - +1.2 985,426 - -1.3 985,426 - +0.2 985,518 + +1.2 985,519 - -1.7 985,519 - -2.3 985,546 - -2.3 985,743 + -0.5 985,743 + -0.7 985,743 + +1.6 985,744 - -0.1 985,744 - -2.0 985,744 - -0.2 985,744 - +0.1 985,800 + +0.4 985,800 + +3.9 985,800 + +0.6 985,800 + -1.1 985,801 - -1.1 985,801 - -0.4 985,801 - -0.5 985,804 + -0.4 985,851 + -1.0 985,851 + -2.0 985,852 - -1.0 985,917 + -0.4 985,918 - -0.1 985,954 + -2.9 985,954 + +1.0 986,038 + ABZR87_RS20490 0.11 -0.3 986,039 - ABZR87_RS20490 0.11 -0.8 986,067 + ABZR87_RS20490 0.13 -1.0 986,068 - ABZR87_RS20490 0.13 -0.9 986,329 - ABZR87_RS20490 0.23 +1.2 986,469 + ABZR87_RS20490 0.28 +1.0 986,469 + ABZR87_RS20490 0.28 -1.1 986,469 + ABZR87_RS20490 0.28 +0.6
Or see this region's nucleotide sequence