Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19915 and ABZR87_RS19920 are separated by 353 nucleotides ABZR87_RS19920 and ABZR87_RS19925 overlap by 4 nucleotides ABZR87_RS19925 and ABZR87_RS19930 are separated by 51 nucleotides
ABZR87_RS19915: ABZR87_RS19915 - acetate/propionate family kinase, at 844,832 to 846,013
_RS19915
ABZR87_RS19920: ABZR87_RS19920 - hypothetical protein, at 846,367 to 846,948
_RS19920
ABZR87_RS19925: ABZR87_RS19925 - hypothetical protein, at 846,945 to 847,631
_RS19925
ABZR87_RS19930: ABZR87_RS19930 - PAS domain-containing sensor histidine kinase, at 847,683 to 849,251
_RS19930
Position (kb) 846
847
848 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 846.119 kb on + strand at 846.145 kb on + strand at 846.145 kb on + strand at 846.146 kb on - strand at 846.146 kb on - strand at 846.146 kb on - strand at 846.146 kb on - strand at 846.170 kb on + strand at 846.170 kb on + strand at 846.180 kb on + strand at 846.181 kb on - strand at 846.242 kb on + strand at 846.242 kb on + strand at 846.242 kb on + strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.288 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.290 kb on - strand at 846.290 kb on - strand at 846.290 kb on - strand at 846.291 kb on + strand at 846.291 kb on + strand at 846.291 kb on + strand at 846.292 kb on - strand at 846.292 kb on - strand at 846.292 kb on - strand at 846.292 kb on - strand at 846.292 kb on - strand at 846.292 kb on - strand at 846.309 kb on + strand at 846.310 kb on - strand at 846.384 kb on - strand at 846.598 kb on + strand, within ABZR87_RS19920 at 846.599 kb on - strand, within ABZR87_RS19920 at 846.631 kb on - strand, within ABZR87_RS19920 at 846.631 kb on - strand, within ABZR87_RS19920 at 846.631 kb on - strand, within ABZR87_RS19920 at 846.697 kb on + strand, within ABZR87_RS19920 at 846.698 kb on - strand, within ABZR87_RS19920 at 846.785 kb on + strand, within ABZR87_RS19920 at 846.785 kb on + strand, within ABZR87_RS19920 at 846.847 kb on + strand, within ABZR87_RS19920 at 846.847 kb on + strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.909 kb on + strand at 846.909 kb on + strand at 846.909 kb on + strand at 846.910 kb on - strand at 846.910 kb on - strand at 846.910 kb on - strand at 846.910 kb on - strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.914 kb on - strand at 846.914 kb on - strand at 846.914 kb on - strand at 846.914 kb on - strand at 846.925 kb on - strand at 846.972 kb on + strand at 846.972 kb on + strand at 846.973 kb on - strand at 847.266 kb on + strand, within ABZR87_RS19925 at 847.266 kb on + strand, within ABZR87_RS19925 at 847.272 kb on + strand, within ABZR87_RS19925 at 847.272 kb on + strand, within ABZR87_RS19925 at 847.273 kb on - strand, within ABZR87_RS19925 at 847.301 kb on + strand, within ABZR87_RS19925 at 847.302 kb on - strand, within ABZR87_RS19925 at 847.302 kb on - strand, within ABZR87_RS19925 at 847.375 kb on + strand, within ABZR87_RS19925 at 847.375 kb on + strand, within ABZR87_RS19925 at 847.376 kb on - strand, within ABZR87_RS19925 at 847.384 kb on - strand, within ABZR87_RS19925 at 847.394 kb on + strand, within ABZR87_RS19925 at 847.394 kb on + strand, within ABZR87_RS19925 at 847.460 kb on + strand, within ABZR87_RS19925 at 847.461 kb on - strand, within ABZR87_RS19925 at 847.461 kb on - strand, within ABZR87_RS19925 at 847.461 kb on - strand, within ABZR87_RS19925 at 847.461 kb on - strand, within ABZR87_RS19925 at 847.551 kb on + strand, within ABZR87_RS19925 at 847.552 kb on - strand, within ABZR87_RS19925 at 847.584 kb on + strand at 847.585 kb on - strand at 847.585 kb on - strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.638 kb on + strand at 847.639 kb on - strand at 847.695 kb on + strand at 847.695 kb on + strand at 847.696 kb on - strand at 848.024 kb on + strand, within ABZR87_RS19930 at 848.024 kb on + strand, within ABZR87_RS19930 at 848.080 kb on + strand, within ABZR87_RS19930 at 848.081 kb on - strand, within ABZR87_RS19930 at 848.081 kb on - strand, within ABZR87_RS19930
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 846,119 + -0.0 846,145 + -0.5 846,145 + -1.0 846,146 - +0.9 846,146 - +2.3 846,146 - -1.1 846,146 - +1.6 846,170 + -0.5 846,170 + +1.4 846,180 + -1.2 846,181 - -1.4 846,242 + -0.0 846,242 + -0.8 846,242 + -0.2 846,243 - -1.5 846,243 - +0.2 846,243 - +1.4 846,243 - +0.2 846,243 - +0.5 846,243 - -1.3 846,243 - -1.7 846,243 - +1.1 846,246 + -1.0 846,246 + +0.7 846,246 + +1.8 846,246 + +1.1 846,246 + +4.1 846,246 + -2.5 846,246 + +1.3 846,246 + +1.0 846,246 + +0.2 846,246 + +1.5 846,246 + -2.0 846,246 + -0.4 846,246 + -0.5 846,247 - -0.5 846,247 - -0.2 846,247 - -0.9 846,247 - -0.8 846,247 - -0.6 846,247 - -1.1 846,247 - +0.6 846,247 - +0.8 846,247 - -1.4 846,247 - +0.6 846,247 - -1.6 846,288 + -0.8 846,289 + -1.0 846,289 + -0.8 846,289 + +1.3 846,289 + -0.7 846,289 + +0.4 846,289 + -1.5 846,289 + -2.1 846,289 + +1.4 846,289 + +0.0 846,289 + +1.4 846,289 + -0.6 846,290 - -0.8 846,290 - +0.5 846,290 - -0.3 846,291 + +0.3 846,291 + +3.9 846,291 + -0.0 846,292 - -0.2 846,292 - -0.2 846,292 - -1.1 846,292 - -2.3 846,292 - -0.2 846,292 - +1.8 846,309 + -1.5 846,310 - +0.2 846,384 - -0.0 846,598 + ABZR87_RS19920 0.40 +0.5 846,599 - ABZR87_RS19920 0.40 -0.8 846,631 - ABZR87_RS19920 0.45 +0.4 846,631 - ABZR87_RS19920 0.45 -1.3 846,631 - ABZR87_RS19920 0.45 -0.5 846,697 + ABZR87_RS19920 0.57 -2.2 846,698 - ABZR87_RS19920 0.57 +1.3 846,785 + ABZR87_RS19920 0.72 +0.7 846,785 + ABZR87_RS19920 0.72 +1.0 846,847 + ABZR87_RS19920 0.82 -1.0 846,847 + ABZR87_RS19920 0.82 +0.7 846,848 - ABZR87_RS19920 0.83 -1.9 846,848 - ABZR87_RS19920 0.83 -0.3 846,848 - ABZR87_RS19920 0.83 -1.9 846,848 - ABZR87_RS19920 0.83 -1.8 846,909 + +0.5 846,909 + +0.2 846,909 + -0.5 846,910 - -0.3 846,910 - -1.0 846,910 - +0.5 846,910 - -1.3 846,913 + -0.4 846,913 + -0.8 846,913 + +2.4 846,913 + -1.8 846,913 + +1.2 846,914 - +0.9 846,914 - -1.0 846,914 - +0.4 846,914 - -0.3 846,925 - +1.5 846,972 + -0.5 846,972 + -1.0 846,973 - -1.3 847,266 + ABZR87_RS19925 0.47 +0.6 847,266 + ABZR87_RS19925 0.47 -1.2 847,272 + ABZR87_RS19925 0.48 +0.3 847,272 + ABZR87_RS19925 0.48 +1.5 847,273 - ABZR87_RS19925 0.48 -0.1 847,301 + ABZR87_RS19925 0.52 -1.4 847,302 - ABZR87_RS19925 0.52 -0.6 847,302 - ABZR87_RS19925 0.52 -2.7 847,375 + ABZR87_RS19925 0.63 -1.3 847,375 + ABZR87_RS19925 0.63 -0.6 847,376 - ABZR87_RS19925 0.63 -1.0 847,384 - ABZR87_RS19925 0.64 -1.4 847,394 + ABZR87_RS19925 0.65 +0.0 847,394 + ABZR87_RS19925 0.65 +1.0 847,460 + ABZR87_RS19925 0.75 -1.0 847,461 - ABZR87_RS19925 0.75 -0.6 847,461 - ABZR87_RS19925 0.75 -0.3 847,461 - ABZR87_RS19925 0.75 +0.0 847,461 - ABZR87_RS19925 0.75 -1.0 847,551 + ABZR87_RS19925 0.88 +0.6 847,552 - ABZR87_RS19925 0.88 +0.9 847,584 + -0.0 847,585 - -0.2 847,585 - -0.1 847,611 + -1.1 847,611 + +1.1 847,611 + -0.3 847,611 + +0.9 847,611 + -0.3 847,611 + +0.4 847,611 + -0.5 847,611 + -0.9 847,611 + +1.3 847,612 - -0.9 847,612 - -2.4 847,612 - -1.8 847,612 - +0.6 847,612 - +3.7 847,612 - -0.6 847,612 - +0.9 847,612 - -1.9 847,612 - -0.6 847,612 - -2.1 847,612 - +0.4 847,612 - +0.7 847,612 - +1.1 847,612 - +0.4 847,638 + -0.1 847,639 - -0.4 847,695 + +0.3 847,695 + -0.0 847,696 - +2.0 848,024 + ABZR87_RS19930 0.22 -1.0 848,024 + ABZR87_RS19930 0.22 -1.3 848,080 + ABZR87_RS19930 0.25 -1.5 848,081 - ABZR87_RS19930 0.25 +0.7 848,081 - ABZR87_RS19930 0.25 +0.8
Or see this region's nucleotide sequence