Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19885

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19880 and ABZR87_RS19885 are separated by 0 nucleotidesABZR87_RS19885 and ABZR87_RS19890 overlap by 4 nucleotides ABZR87_RS19880: ABZR87_RS19880 - alpha/beta fold hydrolase, at 834,581 to 836,329 _RS19880 ABZR87_RS19885: ABZR87_RS19885 - efflux transporter outer membrane subunit, at 836,330 to 837,844 _RS19885 ABZR87_RS19890: ABZR87_RS19890 - efflux RND transporter periplasmic adaptor subunit, at 837,841 to 838,914 _RS19890 Position (kb) 836 837 838Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 835.439 kb on + strand, within ABZR87_RS19880at 835.439 kb on + strand, within ABZR87_RS19880at 835.439 kb on + strand, within ABZR87_RS19880at 835.439 kb on + strand, within ABZR87_RS19880at 835.439 kb on + strand, within ABZR87_RS19880at 835.440 kb on - strand, within ABZR87_RS19880at 835.440 kb on - strand, within ABZR87_RS19880at 835.440 kb on - strand, within ABZR87_RS19880at 835.503 kb on + strand, within ABZR87_RS19880at 835.503 kb on + strand, within ABZR87_RS19880at 835.503 kb on + strand, within ABZR87_RS19880at 835.504 kb on - strand, within ABZR87_RS19880at 835.504 kb on - strand, within ABZR87_RS19880at 835.700 kb on + strand, within ABZR87_RS19880at 835.700 kb on + strand, within ABZR87_RS19880at 835.701 kb on - strand, within ABZR87_RS19880at 835.748 kb on + strand, within ABZR87_RS19880at 835.781 kb on + strand, within ABZR87_RS19880at 835.781 kb on + strand, within ABZR87_RS19880at 835.782 kb on - strand, within ABZR87_RS19880at 835.782 kb on - strand, within ABZR87_RS19880at 835.868 kb on + strand, within ABZR87_RS19880at 835.913 kb on + strand, within ABZR87_RS19880at 835.950 kb on + strand, within ABZR87_RS19880at 836.012 kb on + strand, within ABZR87_RS19880at 836.013 kb on - strand, within ABZR87_RS19880at 836.013 kb on - strand, within ABZR87_RS19880at 836.013 kb on - strand, within ABZR87_RS19880at 836.072 kb on - strand, within ABZR87_RS19880at 836.312 kb on + strandat 836.312 kb on + strandat 836.312 kb on + strandat 836.313 kb on - strandat 836.313 kb on - strandat 836.313 kb on - strandat 836.313 kb on - strandat 836.313 kb on - strandat 836.313 kb on - strandat 836.313 kb on - strandat 836.328 kb on - strandat 836.328 kb on - strandat 836.328 kb on - strandat 836.328 kb on - strandat 836.328 kb on - strandat 836.367 kb on - strandat 836.367 kb on - strandat 836.445 kb on - strandat 836.478 kb on - strandat 836.478 kb on - strandat 836.478 kb on - strandat 836.534 kb on + strand, within ABZR87_RS19885at 836.534 kb on + strand, within ABZR87_RS19885at 836.535 kb on - strand, within ABZR87_RS19885at 836.535 kb on - strand, within ABZR87_RS19885at 836.535 kb on - strand, within ABZR87_RS19885at 836.535 kb on - strand, within ABZR87_RS19885at 836.540 kb on - strand, within ABZR87_RS19885at 836.751 kb on - strand, within ABZR87_RS19885at 836.834 kb on + strand, within ABZR87_RS19885at 836.834 kb on + strand, within ABZR87_RS19885at 836.834 kb on + strand, within ABZR87_RS19885at 836.834 kb on + strand, within ABZR87_RS19885at 836.834 kb on + strand, within ABZR87_RS19885at 836.835 kb on - strand, within ABZR87_RS19885at 836.835 kb on - strand, within ABZR87_RS19885at 836.835 kb on - strand, within ABZR87_RS19885at 836.835 kb on - strand, within ABZR87_RS19885at 836.835 kb on - strand, within ABZR87_RS19885at 836.838 kb on + strand, within ABZR87_RS19885at 836.838 kb on + strand, within ABZR87_RS19885at 836.838 kb on + strand, within ABZR87_RS19885at 836.838 kb on + strand, within ABZR87_RS19885at 836.838 kb on + strand, within ABZR87_RS19885at 836.838 kb on + strand, within ABZR87_RS19885at 836.839 kb on + strand, within ABZR87_RS19885at 836.839 kb on - strand, within ABZR87_RS19885at 836.839 kb on - strand, within ABZR87_RS19885at 836.839 kb on - strand, within ABZR87_RS19885at 836.839 kb on - strand, within ABZR87_RS19885at 836.900 kb on + strand, within ABZR87_RS19885at 836.900 kb on + strand, within ABZR87_RS19885at 836.900 kb on + strand, within ABZR87_RS19885at 836.901 kb on - strand, within ABZR87_RS19885at 836.901 kb on - strand, within ABZR87_RS19885at 836.953 kb on - strand, within ABZR87_RS19885at 836.953 kb on - strand, within ABZR87_RS19885at 837.075 kb on + strand, within ABZR87_RS19885at 837.075 kb on + strand, within ABZR87_RS19885at 837.075 kb on + strand, within ABZR87_RS19885at 837.076 kb on - strand, within ABZR87_RS19885at 837.324 kb on - strand, within ABZR87_RS19885at 837.492 kb on + strand, within ABZR87_RS19885at 837.492 kb on + strand, within ABZR87_RS19885at 837.492 kb on + strand, within ABZR87_RS19885at 837.492 kb on + strand, within ABZR87_RS19885at 837.492 kb on + strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.734 kb on + strandat 837.735 kb on - strandat 837.735 kb on - strandat 837.735 kb on - strandat 838.388 kb on + strand, within ABZR87_RS19890at 838.388 kb on + strand, within ABZR87_RS19890at 838.389 kb on - strand, within ABZR87_RS19890at 838.401 kb on + strand, within ABZR87_RS19890at 838.401 kb on + strand, within ABZR87_RS19890at 838.402 kb on - strand, within ABZR87_RS19890at 838.452 kb on - strand, within ABZR87_RS19890at 838.452 kb on - strand, within ABZR87_RS19890at 838.591 kb on + strand, within ABZR87_RS19890at 838.591 kb on + strand, within ABZR87_RS19890at 838.591 kb on + strand, within ABZR87_RS19890at 838.592 kb on - strand, within ABZR87_RS19890at 838.592 kb on - strand, within ABZR87_RS19890at 838.678 kb on + strand, within ABZR87_RS19890at 838.678 kb on + strand, within ABZR87_RS19890at 838.678 kb on + strand, within ABZR87_RS19890at 838.678 kb on + strand, within ABZR87_RS19890at 838.678 kb on + strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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835,439 + ABZR87_RS19880 0.49 +0.1
835,439 + ABZR87_RS19880 0.49 +1.4
835,439 + ABZR87_RS19880 0.49 -0.9
835,439 + ABZR87_RS19880 0.49 +0.3
835,439 + ABZR87_RS19880 0.49 -1.3
835,440 - ABZR87_RS19880 0.49 -1.4
835,440 - ABZR87_RS19880 0.49 -0.4
835,440 - ABZR87_RS19880 0.49 +1.1
835,503 + ABZR87_RS19880 0.53 -0.2
835,503 + ABZR87_RS19880 0.53 +0.4
835,503 + ABZR87_RS19880 0.53 -1.1
835,504 - ABZR87_RS19880 0.53 +1.0
835,504 - ABZR87_RS19880 0.53 -0.4
835,700 + ABZR87_RS19880 0.64 -0.8
835,700 + ABZR87_RS19880 0.64 +0.6
835,701 - ABZR87_RS19880 0.64 +0.1
835,748 + ABZR87_RS19880 0.67 +0.8
835,781 + ABZR87_RS19880 0.69 +2.0
835,781 + ABZR87_RS19880 0.69 -1.2
835,782 - ABZR87_RS19880 0.69 +0.3
835,782 - ABZR87_RS19880 0.69 -0.8
835,868 + ABZR87_RS19880 0.74 -0.1
835,913 + ABZR87_RS19880 0.76 +2.4
835,950 + ABZR87_RS19880 0.78 +1.6
836,012 + ABZR87_RS19880 0.82 -1.6
836,013 - ABZR87_RS19880 0.82 -0.8
836,013 - ABZR87_RS19880 0.82 -0.3
836,013 - ABZR87_RS19880 0.82 -0.6
836,072 - ABZR87_RS19880 0.85 -1.0
836,312 + +1.0
836,312 + -0.1
836,312 + +0.2
836,313 - -0.1
836,313 - +0.4
836,313 - -1.1
836,313 - +0.4
836,313 - -1.3
836,313 - -0.1
836,313 - -1.9
836,328 - -0.2
836,328 - -1.3
836,328 - -0.2
836,328 - -0.7
836,328 - -0.2
836,367 - +0.2
836,367 - +1.3
836,445 - -2.0
836,478 - -0.3
836,478 - -2.3
836,478 - -1.1
836,534 + ABZR87_RS19885 0.13 +0.6
836,534 + ABZR87_RS19885 0.13 +0.3
836,535 - ABZR87_RS19885 0.14 +0.8
836,535 - ABZR87_RS19885 0.14 -1.4
836,535 - ABZR87_RS19885 0.14 -0.1
836,535 - ABZR87_RS19885 0.14 -0.2
836,540 - ABZR87_RS19885 0.14 +0.7
836,751 - ABZR87_RS19885 0.28 +1.2
836,834 + ABZR87_RS19885 0.33 +0.9
836,834 + ABZR87_RS19885 0.33 -1.0
836,834 + ABZR87_RS19885 0.33 +0.8
836,834 + ABZR87_RS19885 0.33 -1.5
836,834 + ABZR87_RS19885 0.33 +3.0
836,835 - ABZR87_RS19885 0.33 +1.1
836,835 - ABZR87_RS19885 0.33 +1.5
836,835 - ABZR87_RS19885 0.33 -1.4
836,835 - ABZR87_RS19885 0.33 +0.8
836,835 - ABZR87_RS19885 0.33 -1.4
836,838 + ABZR87_RS19885 0.34 +0.6
836,838 + ABZR87_RS19885 0.34 +0.5
836,838 + ABZR87_RS19885 0.34 -0.7
836,838 + ABZR87_RS19885 0.34 -0.3
836,838 + ABZR87_RS19885 0.34 -0.3
836,838 + ABZR87_RS19885 0.34 +1.2
836,839 + ABZR87_RS19885 0.34 +0.5
836,839 - ABZR87_RS19885 0.34 +0.4
836,839 - ABZR87_RS19885 0.34 +1.0
836,839 - ABZR87_RS19885 0.34 -0.5
836,839 - ABZR87_RS19885 0.34 -0.4
836,900 + ABZR87_RS19885 0.38 +0.4
836,900 + ABZR87_RS19885 0.38 +1.0
836,900 + ABZR87_RS19885 0.38 -1.7
836,901 - ABZR87_RS19885 0.38 +2.1
836,901 - ABZR87_RS19885 0.38 -0.4
836,953 - ABZR87_RS19885 0.41 +2.5
836,953 - ABZR87_RS19885 0.41 +0.0
837,075 + ABZR87_RS19885 0.49 +0.6
837,075 + ABZR87_RS19885 0.49 +1.9
837,075 + ABZR87_RS19885 0.49 -0.9
837,076 - ABZR87_RS19885 0.49 +1.9
837,324 - ABZR87_RS19885 0.66 -1.8
837,492 + ABZR87_RS19885 0.77 +0.5
837,492 + ABZR87_RS19885 0.77 -1.8
837,492 + ABZR87_RS19885 0.77 +0.7
837,492 + ABZR87_RS19885 0.77 -0.3
837,492 + ABZR87_RS19885 0.77 -0.1
837,493 - ABZR87_RS19885 0.77 -0.2
837,493 - ABZR87_RS19885 0.77 +0.1
837,493 - ABZR87_RS19885 0.77 +0.1
837,493 - ABZR87_RS19885 0.77 +0.1
837,493 - ABZR87_RS19885 0.77 +0.0
837,493 - ABZR87_RS19885 0.77 -1.0
837,493 - ABZR87_RS19885 0.77 +0.7
837,493 - ABZR87_RS19885 0.77 +0.8
837,493 - ABZR87_RS19885 0.77 -1.2
837,493 - ABZR87_RS19885 0.77 +0.2
837,734 + +0.9
837,735 - -0.9
837,735 - +0.4
837,735 - +0.8
838,388 + ABZR87_RS19890 0.51 +0.0
838,388 + ABZR87_RS19890 0.51 +2.3
838,389 - ABZR87_RS19890 0.51 +1.1
838,401 + ABZR87_RS19890 0.52 -1.5
838,401 + ABZR87_RS19890 0.52 -1.3
838,402 - ABZR87_RS19890 0.52 +1.1
838,452 - ABZR87_RS19890 0.57 +0.3
838,452 - ABZR87_RS19890 0.57 -0.4
838,591 + ABZR87_RS19890 0.70 +2.1
838,591 + ABZR87_RS19890 0.70 -0.2
838,591 + ABZR87_RS19890 0.70 -1.9
838,592 - ABZR87_RS19890 0.70 -0.9
838,592 - ABZR87_RS19890 0.70 +0.9
838,678 + ABZR87_RS19890 0.78 -0.6
838,678 + ABZR87_RS19890 0.78 -0.3
838,678 + ABZR87_RS19890 0.78 +0.1
838,678 + ABZR87_RS19890 0.78 +0.7
838,678 + ABZR87_RS19890 0.78 -0.8
838,679 - ABZR87_RS19890 0.78 -0.0
838,679 - ABZR87_RS19890 0.78 +1.7
838,679 - ABZR87_RS19890 0.78 -2.5
838,679 - ABZR87_RS19890 0.78 +1.2
838,679 - ABZR87_RS19890 0.78 -1.2
838,679 - ABZR87_RS19890 0.78 +4.4

Or see this region's nucleotide sequence