Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19140 and ABZR87_RS19145 are separated by 16 nucleotides ABZR87_RS19145 and ABZR87_RS19150 are separated by 353 nucleotides ABZR87_RS19150 and ABZR87_RS19155 are separated by 65 nucleotides ABZR87_RS19155 and ABZR87_RS19160 are separated by 274 nucleotides
ABZR87_RS19140: ABZR87_RS19140 - DUF3175 domain-containing protein, at 658,181 to 658,537
_RS19140
ABZR87_RS19145: ABZR87_RS19145 - hypothetical protein, at 658,554 to 658,835
_RS19145
ABZR87_RS19150: ABZR87_RS19150 - dodecin, at 659,189 to 659,437
_RS19150
ABZR87_RS19155: ABZR87_RS19155 - acid phosphatase, at 659,503 to 661,665
_RS19155
ABZR87_RS19160: ABZR87_RS19160 - cytochrome-c peroxidase, at 661,940 to 663,346
_RS19160
Position (kb) 659
660
661
662 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 658.600 kb on + strand, within ABZR87_RS19145 at 658.600 kb on + strand, within ABZR87_RS19145 at 658.600 kb on + strand, within ABZR87_RS19145 at 658.600 kb on + strand, within ABZR87_RS19145 at 658.601 kb on - strand, within ABZR87_RS19145 at 658.601 kb on - strand, within ABZR87_RS19145 at 658.601 kb on - strand, within ABZR87_RS19145 at 658.601 kb on - strand, within ABZR87_RS19145 at 658.601 kb on - strand, within ABZR87_RS19145 at 658.627 kb on + strand, within ABZR87_RS19145 at 658.627 kb on + strand, within ABZR87_RS19145 at 658.627 kb on + strand, within ABZR87_RS19145 at 658.628 kb on - strand, within ABZR87_RS19145 at 658.628 kb on - strand, within ABZR87_RS19145 at 658.628 kb on - strand, within ABZR87_RS19145 at 658.628 kb on - strand, within ABZR87_RS19145 at 658.628 kb on - strand, within ABZR87_RS19145 at 658.628 kb on - strand, within ABZR87_RS19145 at 658.631 kb on + strand, within ABZR87_RS19145 at 658.631 kb on + strand, within ABZR87_RS19145 at 658.631 kb on + strand, within ABZR87_RS19145 at 658.631 kb on + strand, within ABZR87_RS19145 at 658.631 kb on + strand, within ABZR87_RS19145 at 658.631 kb on + strand, within ABZR87_RS19145 at 658.632 kb on - strand, within ABZR87_RS19145 at 658.632 kb on - strand, within ABZR87_RS19145 at 658.651 kb on + strand, within ABZR87_RS19145 at 658.684 kb on + strand, within ABZR87_RS19145 at 658.685 kb on - strand, within ABZR87_RS19145 at 658.685 kb on - strand, within ABZR87_RS19145 at 658.802 kb on - strand, within ABZR87_RS19145 at 658.914 kb on + strand at 658.915 kb on - strand at 659.095 kb on + strand at 659.096 kb on - strand at 659.096 kb on - strand at 659.096 kb on - strand at 659.188 kb on + strand at 659.200 kb on + strand at 659.200 kb on + strand at 659.200 kb on + strand at 659.200 kb on + strand at 659.201 kb on - strand at 659.201 kb on - strand at 659.201 kb on - strand at 659.204 kb on + strand at 659.204 kb on + strand at 659.204 kb on + strand at 659.204 kb on + strand at 659.205 kb on - strand at 659.205 kb on - strand at 659.205 kb on - strand at 659.435 kb on + strand at 659.436 kb on - strand at 659.504 kb on + strand at 659.517 kb on + strand at 659.654 kb on + strand at 659.655 kb on - strand at 659.762 kb on + strand, within ABZR87_RS19155 at 659.762 kb on + strand, within ABZR87_RS19155 at 659.762 kb on + strand, within ABZR87_RS19155 at 659.763 kb on - strand, within ABZR87_RS19155 at 659.763 kb on - strand, within ABZR87_RS19155 at 659.783 kb on + strand, within ABZR87_RS19155 at 659.783 kb on + strand, within ABZR87_RS19155 at 659.784 kb on - strand, within ABZR87_RS19155 at 659.879 kb on + strand, within ABZR87_RS19155 at 659.879 kb on + strand, within ABZR87_RS19155 at 659.915 kb on + strand, within ABZR87_RS19155 at 659.916 kb on - strand, within ABZR87_RS19155 at 659.972 kb on + strand, within ABZR87_RS19155 at 659.972 kb on + strand, within ABZR87_RS19155 at 659.973 kb on - strand, within ABZR87_RS19155 at 660.038 kb on + strand, within ABZR87_RS19155 at 660.038 kb on + strand, within ABZR87_RS19155 at 660.038 kb on + strand, within ABZR87_RS19155 at 660.039 kb on - strand, within ABZR87_RS19155 at 660.039 kb on - strand, within ABZR87_RS19155 at 660.084 kb on - strand, within ABZR87_RS19155 at 660.380 kb on + strand, within ABZR87_RS19155 at 660.380 kb on + strand, within ABZR87_RS19155 at 660.381 kb on - strand, within ABZR87_RS19155 at 660.381 kb on - strand, within ABZR87_RS19155 at 660.381 kb on - strand, within ABZR87_RS19155 at 660.527 kb on + strand, within ABZR87_RS19155 at 660.527 kb on + strand, within ABZR87_RS19155 at 660.528 kb on - strand, within ABZR87_RS19155 at 660.528 kb on - strand, within ABZR87_RS19155 at 660.528 kb on - strand, within ABZR87_RS19155 at 660.528 kb on - strand, within ABZR87_RS19155 at 660.528 kb on - strand, within ABZR87_RS19155 at 660.587 kb on + strand, within ABZR87_RS19155 at 660.587 kb on + strand, within ABZR87_RS19155 at 660.588 kb on - strand, within ABZR87_RS19155 at 660.588 kb on - strand, within ABZR87_RS19155 at 660.588 kb on - strand, within ABZR87_RS19155 at 660.632 kb on + strand, within ABZR87_RS19155 at 660.633 kb on - strand, within ABZR87_RS19155 at 660.713 kb on + strand, within ABZR87_RS19155 at 660.714 kb on - strand, within ABZR87_RS19155 at 660.989 kb on + strand, within ABZR87_RS19155 at 660.990 kb on - strand, within ABZR87_RS19155 at 661.019 kb on + strand, within ABZR87_RS19155 at 661.448 kb on + strand, within ABZR87_RS19155 at 661.518 kb on + strand at 661.542 kb on - strand at 661.783 kb on + strand at 661.783 kb on + strand at 661.784 kb on - strand at 661.904 kb on + strand at 661.904 kb on + strand at 661.904 kb on + strand at 661.904 kb on + strand at 661.904 kb on + strand at 661.905 kb on - strand at 661.905 kb on - strand at 661.905 kb on - strand at 662.144 kb on + strand, within ABZR87_RS19160 at 662.159 kb on + strand, within ABZR87_RS19160 at 662.159 kb on + strand, within ABZR87_RS19160 at 662.160 kb on - strand, within ABZR87_RS19160 at 662.160 kb on - strand, within ABZR87_RS19160 at 662.291 kb on + strand, within ABZR87_RS19160 at 662.291 kb on + strand, within ABZR87_RS19160 at 662.292 kb on - strand, within ABZR87_RS19160 at 662.375 kb on + strand, within ABZR87_RS19160 at 662.424 kb on - strand, within ABZR87_RS19160
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 658,600 + ABZR87_RS19145 0.16 +0.8 658,600 + ABZR87_RS19145 0.16 +0.7 658,600 + ABZR87_RS19145 0.16 +0.9 658,600 + ABZR87_RS19145 0.16 -0.0 658,601 - ABZR87_RS19145 0.17 -1.1 658,601 - ABZR87_RS19145 0.17 +0.1 658,601 - ABZR87_RS19145 0.17 -0.8 658,601 - ABZR87_RS19145 0.17 -0.2 658,601 - ABZR87_RS19145 0.17 -1.1 658,627 + ABZR87_RS19145 0.26 +2.1 658,627 + ABZR87_RS19145 0.26 +2.3 658,627 + ABZR87_RS19145 0.26 +0.5 658,628 - ABZR87_RS19145 0.26 +0.2 658,628 - ABZR87_RS19145 0.26 +0.4 658,628 - ABZR87_RS19145 0.26 +1.3 658,628 - ABZR87_RS19145 0.26 -1.3 658,628 - ABZR87_RS19145 0.26 +0.8 658,628 - ABZR87_RS19145 0.26 +0.5 658,631 + ABZR87_RS19145 0.27 -0.0 658,631 + ABZR87_RS19145 0.27 -0.6 658,631 + ABZR87_RS19145 0.27 +0.6 658,631 + ABZR87_RS19145 0.27 -0.5 658,631 + ABZR87_RS19145 0.27 -0.9 658,631 + ABZR87_RS19145 0.27 +0.7 658,632 - ABZR87_RS19145 0.28 +0.0 658,632 - ABZR87_RS19145 0.28 +0.1 658,651 + ABZR87_RS19145 0.34 -1.1 658,684 + ABZR87_RS19145 0.46 +0.2 658,685 - ABZR87_RS19145 0.46 +1.5 658,685 - ABZR87_RS19145 0.46 +0.4 658,802 - ABZR87_RS19145 0.88 -0.5 658,914 + +0.9 658,915 - +0.5 659,095 + +0.6 659,096 - -0.0 659,096 - -0.2 659,096 - +1.1 659,188 + +0.9 659,200 + -0.5 659,200 + +0.5 659,200 + -0.7 659,200 + -0.9 659,201 - +0.7 659,201 - +1.0 659,201 - -1.7 659,204 + +0.1 659,204 + +2.9 659,204 + -1.6 659,204 + -0.1 659,205 - -1.0 659,205 - +0.0 659,205 - +0.4 659,435 + -0.5 659,436 - +1.0 659,504 + +1.6 659,517 + -1.2 659,654 + -2.3 659,655 - +1.0 659,762 + ABZR87_RS19155 0.12 +1.0 659,762 + ABZR87_RS19155 0.12 +1.3 659,762 + ABZR87_RS19155 0.12 -1.8 659,763 - ABZR87_RS19155 0.12 +1.1 659,763 - ABZR87_RS19155 0.12 +0.3 659,783 + ABZR87_RS19155 0.13 -0.0 659,783 + ABZR87_RS19155 0.13 -0.8 659,784 - ABZR87_RS19155 0.13 +6.2 659,879 + ABZR87_RS19155 0.17 -0.4 659,879 + ABZR87_RS19155 0.17 -3.3 659,915 + ABZR87_RS19155 0.19 +0.1 659,916 - ABZR87_RS19155 0.19 -1.0 659,972 + ABZR87_RS19155 0.22 +1.4 659,972 + ABZR87_RS19155 0.22 -0.2 659,973 - ABZR87_RS19155 0.22 -0.6 660,038 + ABZR87_RS19155 0.25 +0.4 660,038 + ABZR87_RS19155 0.25 +1.9 660,038 + ABZR87_RS19155 0.25 -1.1 660,039 - ABZR87_RS19155 0.25 +1.3 660,039 - ABZR87_RS19155 0.25 -0.8 660,084 - ABZR87_RS19155 0.27 -0.9 660,380 + ABZR87_RS19155 0.41 +1.5 660,380 + ABZR87_RS19155 0.41 +1.7 660,381 - ABZR87_RS19155 0.41 -1.0 660,381 - ABZR87_RS19155 0.41 +0.1 660,381 - ABZR87_RS19155 0.41 +1.4 660,527 + ABZR87_RS19155 0.47 +1.0 660,527 + ABZR87_RS19155 0.47 +0.5 660,528 - ABZR87_RS19155 0.47 -0.2 660,528 - ABZR87_RS19155 0.47 -1.3 660,528 - ABZR87_RS19155 0.47 -2.0 660,528 - ABZR87_RS19155 0.47 -1.3 660,528 - ABZR87_RS19155 0.47 +1.1 660,587 + ABZR87_RS19155 0.50 +1.3 660,587 + ABZR87_RS19155 0.50 -0.6 660,588 - ABZR87_RS19155 0.50 -1.7 660,588 - ABZR87_RS19155 0.50 -1.6 660,588 - ABZR87_RS19155 0.50 +0.2 660,632 + ABZR87_RS19155 0.52 -0.7 660,633 - ABZR87_RS19155 0.52 -1.0 660,713 + ABZR87_RS19155 0.56 -0.2 660,714 - ABZR87_RS19155 0.56 -1.3 660,989 + ABZR87_RS19155 0.69 +0.4 660,990 - ABZR87_RS19155 0.69 +0.1 661,019 + ABZR87_RS19155 0.70 +0.1 661,448 + ABZR87_RS19155 0.90 +1.1 661,518 + -2.1 661,542 - -0.3 661,783 + +0.0 661,783 + -0.0 661,784 - -0.2 661,904 + +1.7 661,904 + -1.5 661,904 + -1.1 661,904 + -0.8 661,904 + +0.1 661,905 - +2.3 661,905 - +0.3 661,905 - +0.8 662,144 + ABZR87_RS19160 0.14 +3.7 662,159 + ABZR87_RS19160 0.16 +1.5 662,159 + ABZR87_RS19160 0.16 +1.9 662,160 - ABZR87_RS19160 0.16 +1.0 662,160 - ABZR87_RS19160 0.16 +1.0 662,291 + ABZR87_RS19160 0.25 -2.0 662,291 + ABZR87_RS19160 0.25 -0.7 662,292 - ABZR87_RS19160 0.25 -1.1 662,375 + ABZR87_RS19160 0.31 -2.1 662,424 - ABZR87_RS19160 0.34 +3.1
Or see this region's nucleotide sequence