Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17660 and ABZR87_RS17665 are separated by 144 nucleotides ABZR87_RS17665 and ABZR87_RS17670 overlap by 4 nucleotides ABZR87_RS17670 and ABZR87_RS17675 overlap by 4 nucleotides ABZR87_RS17675 and ABZR87_RS17680 are separated by 161 nucleotides
ABZR87_RS17660: ABZR87_RS17660 - efflux RND transporter permease subunit, at 327,128 to 330,250
_RS17660
ABZR87_RS17665: ABZR87_RS17665 - PAS domain-containing protein, at 330,395 to 331,036
_RS17665
ABZR87_RS17670: ABZR87_RS17670 - threo-3-hydroxy-L-aspartate ammonia-lyase, at 331,033 to 332,010
_RS17670
ABZR87_RS17675: ABZR87_RS17675 - RidA family protein, at 332,007 to 332,396
_RS17675
ABZR87_RS17680: ABZR87_RS17680 - flagellar brake protein, at 332,558 to 333,439
_RS17680
Position (kb) 331
332
333 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 330.091 kb on + strand at 330.091 kb on + strand at 330.091 kb on + strand at 330.091 kb on + strand at 330.092 kb on - strand at 330.092 kb on - strand at 330.092 kb on - strand at 330.092 kb on - strand at 330.092 kb on - strand at 330.152 kb on + strand at 330.152 kb on + strand at 330.152 kb on + strand at 330.152 kb on + strand at 330.153 kb on - strand at 330.153 kb on - strand at 330.153 kb on - strand at 330.153 kb on - strand at 330.153 kb on - strand at 330.248 kb on + strand at 330.248 kb on + strand at 330.249 kb on - strand at 330.256 kb on + strand at 330.274 kb on - strand at 330.274 kb on - strand at 330.701 kb on + strand, within ABZR87_RS17665 at 330.713 kb on - strand, within ABZR87_RS17665 at 330.713 kb on - strand, within ABZR87_RS17665 at 330.732 kb on + strand, within ABZR87_RS17665 at 330.732 kb on + strand, within ABZR87_RS17665 at 330.732 kb on + strand, within ABZR87_RS17665 at 330.732 kb on + strand, within ABZR87_RS17665 at 330.733 kb on - strand, within ABZR87_RS17665 at 330.733 kb on - strand, within ABZR87_RS17665 at 331.007 kb on + strand at 331.007 kb on + strand at 331.007 kb on + strand at 331.008 kb on - strand at 331.008 kb on - strand at 331.008 kb on - strand at 331.008 kb on - strand at 331.013 kb on + strand at 331.013 kb on + strand at 331.013 kb on + strand at 331.014 kb on - strand at 331.014 kb on - strand at 331.014 kb on - strand at 331.014 kb on - strand at 331.051 kb on + strand at 331.207 kb on + strand, within ABZR87_RS17670 at 331.207 kb on + strand, within ABZR87_RS17670 at 331.207 kb on + strand, within ABZR87_RS17670 at 331.207 kb on + strand, within ABZR87_RS17670 at 331.208 kb on - strand, within ABZR87_RS17670 at 331.208 kb on - strand, within ABZR87_RS17670 at 331.409 kb on - strand, within ABZR87_RS17670 at 331.409 kb on - strand, within ABZR87_RS17670 at 331.461 kb on + strand, within ABZR87_RS17670 at 331.461 kb on + strand, within ABZR87_RS17670 at 331.462 kb on - strand, within ABZR87_RS17670 at 331.477 kb on + strand, within ABZR87_RS17670 at 331.477 kb on + strand, within ABZR87_RS17670 at 331.478 kb on - strand, within ABZR87_RS17670 at 331.553 kb on + strand, within ABZR87_RS17670 at 331.553 kb on + strand, within ABZR87_RS17670 at 331.553 kb on + strand, within ABZR87_RS17670 at 331.554 kb on - strand, within ABZR87_RS17670 at 331.554 kb on - strand, within ABZR87_RS17670 at 331.554 kb on - strand, within ABZR87_RS17670 at 331.554 kb on - strand, within ABZR87_RS17670 at 331.707 kb on + strand, within ABZR87_RS17670 at 331.708 kb on - strand, within ABZR87_RS17670 at 331.708 kb on - strand, within ABZR87_RS17670 at 332.022 kb on + strand at 332.022 kb on + strand at 332.061 kb on + strand, within ABZR87_RS17675 at 332.062 kb on - strand, within ABZR87_RS17675 at 332.062 kb on - strand, within ABZR87_RS17675 at 332.062 kb on - strand, within ABZR87_RS17675 at 332.062 kb on - strand, within ABZR87_RS17675 at 332.244 kb on + strand, within ABZR87_RS17675 at 332.244 kb on + strand, within ABZR87_RS17675 at 332.244 kb on + strand, within ABZR87_RS17675 at 332.245 kb on - strand, within ABZR87_RS17675 at 332.245 kb on - strand, within ABZR87_RS17675 at 332.245 kb on - strand, within ABZR87_RS17675 at 332.353 kb on - strand, within ABZR87_RS17675 at 332.491 kb on + strand at 332.820 kb on + strand, within ABZR87_RS17680 at 332.821 kb on - strand, within ABZR87_RS17680 at 332.882 kb on + strand, within ABZR87_RS17680 at 332.882 kb on + strand, within ABZR87_RS17680 at 332.882 kb on + strand, within ABZR87_RS17680 at 332.883 kb on - strand, within ABZR87_RS17680 at 332.883 kb on - strand, within ABZR87_RS17680 at 332.883 kb on - strand, within ABZR87_RS17680 at 332.883 kb on - strand, within ABZR87_RS17680 at 332.884 kb on + strand, within ABZR87_RS17680 at 332.884 kb on + strand, within ABZR87_RS17680 at 332.885 kb on - strand, within ABZR87_RS17680 at 332.885 kb on - strand, within ABZR87_RS17680
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 330,091 + +0.2 330,091 + +0.9 330,091 + -2.1 330,091 + +1.1 330,092 - +2.8 330,092 - +1.0 330,092 - -0.3 330,092 - -1.3 330,092 - +0.5 330,152 + -1.0 330,152 + +0.5 330,152 + +0.1 330,152 + +1.2 330,153 - -0.8 330,153 - -0.2 330,153 - +0.2 330,153 - +0.3 330,153 - +0.8 330,248 + -0.7 330,248 + +0.1 330,249 - +0.0 330,256 + +3.9 330,274 - +1.6 330,274 - +0.4 330,701 + ABZR87_RS17665 0.48 -1.7 330,713 - ABZR87_RS17665 0.50 -1.1 330,713 - ABZR87_RS17665 0.50 -1.0 330,732 + ABZR87_RS17665 0.52 -1.9 330,732 + ABZR87_RS17665 0.52 -1.8 330,732 + ABZR87_RS17665 0.52 +1.9 330,732 + ABZR87_RS17665 0.52 -0.2 330,733 - ABZR87_RS17665 0.53 +1.1 330,733 - ABZR87_RS17665 0.53 -0.6 331,007 + -1.5 331,007 + +0.8 331,007 + +1.6 331,008 - -1.1 331,008 - +0.8 331,008 - -0.1 331,008 - -1.9 331,013 + -0.5 331,013 + +0.1 331,013 + +0.7 331,014 - -0.3 331,014 - -0.7 331,014 - +1.0 331,014 - -0.6 331,051 + +1.2 331,207 + ABZR87_RS17670 0.18 -0.6 331,207 + ABZR87_RS17670 0.18 -0.3 331,207 + ABZR87_RS17670 0.18 +0.3 331,207 + ABZR87_RS17670 0.18 -0.8 331,208 - ABZR87_RS17670 0.18 -0.1 331,208 - ABZR87_RS17670 0.18 +1.9 331,409 - ABZR87_RS17670 0.38 -1.1 331,409 - ABZR87_RS17670 0.38 +0.7 331,461 + ABZR87_RS17670 0.44 -0.1 331,461 + ABZR87_RS17670 0.44 -1.1 331,462 - ABZR87_RS17670 0.44 -1.1 331,477 + ABZR87_RS17670 0.45 +0.0 331,477 + ABZR87_RS17670 0.45 +0.1 331,478 - ABZR87_RS17670 0.46 -2.7 331,553 + ABZR87_RS17670 0.53 -0.2 331,553 + ABZR87_RS17670 0.53 +0.2 331,553 + ABZR87_RS17670 0.53 +0.8 331,554 - ABZR87_RS17670 0.53 +0.9 331,554 - ABZR87_RS17670 0.53 -0.1 331,554 - ABZR87_RS17670 0.53 -1.4 331,554 - ABZR87_RS17670 0.53 +0.2 331,707 + ABZR87_RS17670 0.69 +1.2 331,708 - ABZR87_RS17670 0.69 -0.5 331,708 - ABZR87_RS17670 0.69 +0.6 332,022 + +0.2 332,022 + +0.4 332,061 + ABZR87_RS17675 0.14 -1.0 332,062 - ABZR87_RS17675 0.14 -1.4 332,062 - ABZR87_RS17675 0.14 -1.0 332,062 - ABZR87_RS17675 0.14 +2.6 332,062 - ABZR87_RS17675 0.14 -0.1 332,244 + ABZR87_RS17675 0.61 -1.4 332,244 + ABZR87_RS17675 0.61 +2.1 332,244 + ABZR87_RS17675 0.61 -0.7 332,245 - ABZR87_RS17675 0.61 -1.5 332,245 - ABZR87_RS17675 0.61 -0.1 332,245 - ABZR87_RS17675 0.61 +3.5 332,353 - ABZR87_RS17675 0.89 +0.9 332,491 + -2.3 332,820 + ABZR87_RS17680 0.30 -0.1 332,821 - ABZR87_RS17680 0.30 -1.8 332,882 + ABZR87_RS17680 0.37 -0.2 332,882 + ABZR87_RS17680 0.37 -1.4 332,882 + ABZR87_RS17680 0.37 +3.4 332,883 - ABZR87_RS17680 0.37 -0.5 332,883 - ABZR87_RS17680 0.37 -1.1 332,883 - ABZR87_RS17680 0.37 -1.7 332,883 - ABZR87_RS17680 0.37 -0.2 332,884 + ABZR87_RS17680 0.37 -1.2 332,884 + ABZR87_RS17680 0.37 -0.1 332,885 - ABZR87_RS17680 0.37 -0.9 332,885 - ABZR87_RS17680 0.37 -1.0
Or see this region's nucleotide sequence