Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17055 and ABZR87_RS17060 are separated by 33 nucleotides ABZR87_RS17060 and ABZR87_RS17065 are separated by 128 nucleotides ABZR87_RS17065 and ABZR87_RS17070 are separated by 12 nucleotides ABZR87_RS17070 and ABZR87_RS17075 are separated by 160 nucleotides ABZR87_RS17075 and ABZR87_RS17080 are separated by 172 nucleotides
ABZR87_RS17055: ABZR87_RS17055 - sulfite exporter TauE/SafE family protein, at 176,530 to 177,312
_RS17055
ABZR87_RS17060: ABZR87_RS17060 - carboxymuconolactone decarboxylase family protein, at 177,346 to 177,747
_RS17060
ABZR87_RS17065: ABZR87_RS17065 - hypothetical protein, at 177,876 to 178,208
_RS17065
ABZR87_RS17070: ABZR87_RS17070 - alpha/beta hydrolase, at 178,221 to 179,030
_RS17070
ABZR87_RS17075: ABZR87_RS17075 - acyl-CoA thioesterase, at 179,191 to 179,694
_RS17075
ABZR87_RS17080: ABZR87_RS17080 - DUF2946 family protein, at 179,867 to 180,262
_RS17080
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 177.642 kb on + strand, within ABZR87_RS17060 at 177.643 kb on - strand, within ABZR87_RS17060 at 177.643 kb on - strand, within ABZR87_RS17060 at 177.652 kb on + strand, within ABZR87_RS17060 at 177.652 kb on + strand, within ABZR87_RS17060 at 177.652 kb on + strand, within ABZR87_RS17060 at 177.652 kb on + strand, within ABZR87_RS17060 at 177.653 kb on - strand, within ABZR87_RS17060 at 177.746 kb on - strand at 177.746 kb on - strand at 177.782 kb on + strand at 177.782 kb on + strand at 177.783 kb on - strand at 177.815 kb on - strand at 177.815 kb on - strand at 177.999 kb on + strand, within ABZR87_RS17065 at 178.000 kb on - strand, within ABZR87_RS17065 at 178.000 kb on - strand, within ABZR87_RS17065 at 178.080 kb on + strand, within ABZR87_RS17065 at 178.080 kb on + strand, within ABZR87_RS17065 at 178.081 kb on - strand, within ABZR87_RS17065 at 178.161 kb on + strand, within ABZR87_RS17065 at 178.209 kb on + strand at 178.209 kb on + strand at 178.210 kb on - strand at 178.210 kb on - strand at 178.210 kb on - strand at 178.329 kb on + strand, within ABZR87_RS17070 at 178.330 kb on - strand, within ABZR87_RS17070 at 178.330 kb on - strand, within ABZR87_RS17070 at 178.330 kb on - strand, within ABZR87_RS17070 at 178.330 kb on - strand, within ABZR87_RS17070 at 178.330 kb on - strand, within ABZR87_RS17070 at 178.386 kb on - strand, within ABZR87_RS17070 at 178.491 kb on + strand, within ABZR87_RS17070 at 178.491 kb on + strand, within ABZR87_RS17070 at 178.491 kb on + strand, within ABZR87_RS17070 at 178.491 kb on + strand, within ABZR87_RS17070 at 178.492 kb on - strand, within ABZR87_RS17070 at 178.497 kb on + strand, within ABZR87_RS17070 at 178.498 kb on - strand, within ABZR87_RS17070 at 178.498 kb on - strand, within ABZR87_RS17070 at 178.728 kb on + strand, within ABZR87_RS17070 at 178.729 kb on - strand, within ABZR87_RS17070 at 178.899 kb on + strand, within ABZR87_RS17070 at 178.899 kb on + strand, within ABZR87_RS17070 at 178.899 kb on + strand, within ABZR87_RS17070 at 178.899 kb on + strand, within ABZR87_RS17070 at 178.899 kb on + strand, within ABZR87_RS17070 at 178.900 kb on - strand, within ABZR87_RS17070 at 178.900 kb on - strand, within ABZR87_RS17070 at 178.900 kb on - strand, within ABZR87_RS17070 at 179.028 kb on + strand at 179.073 kb on + strand at 179.074 kb on - strand at 179.085 kb on + strand at 179.085 kb on + strand at 179.137 kb on + strand at 179.137 kb on + strand at 179.138 kb on - strand at 179.192 kb on + strand at 179.193 kb on - strand at 179.193 kb on - strand at 179.193 kb on - strand at 179.216 kb on + strand at 179.217 kb on - strand at 179.217 kb on - strand at 179.375 kb on + strand, within ABZR87_RS17075 at 179.376 kb on - strand, within ABZR87_RS17075 at 179.376 kb on - strand, within ABZR87_RS17075 at 179.376 kb on - strand, within ABZR87_RS17075 at 179.388 kb on + strand, within ABZR87_RS17075 at 179.388 kb on + strand, within ABZR87_RS17075 at 179.388 kb on + strand, within ABZR87_RS17075 at 179.462 kb on + strand, within ABZR87_RS17075 at 179.462 kb on + strand, within ABZR87_RS17075 at 179.462 kb on + strand, within ABZR87_RS17075 at 179.463 kb on - strand, within ABZR87_RS17075 at 179.463 kb on - strand, within ABZR87_RS17075 at 179.463 kb on - strand, within ABZR87_RS17075 at 179.550 kb on - strand, within ABZR87_RS17075 at 179.550 kb on - strand, within ABZR87_RS17075 at 179.579 kb on + strand, within ABZR87_RS17075 at 179.579 kb on + strand, within ABZR87_RS17075 at 179.580 kb on - strand, within ABZR87_RS17075 at 179.580 kb on - strand, within ABZR87_RS17075 at 179.580 kb on - strand, within ABZR87_RS17075 at 179.620 kb on + strand, within ABZR87_RS17075 at 179.620 kb on + strand, within ABZR87_RS17075 at 179.620 kb on + strand, within ABZR87_RS17075 at 179.620 kb on + strand, within ABZR87_RS17075 at 179.688 kb on + strand at 179.689 kb on - strand at 179.689 kb on - strand at 179.689 kb on - strand at 179.819 kb on - strand at 179.823 kb on + strand at 179.823 kb on + strand at 179.823 kb on + strand at 179.824 kb on - strand at 180.008 kb on - strand, within ABZR87_RS17080 at 180.015 kb on + strand, within ABZR87_RS17080
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 177,642 + ABZR87_RS17060 0.74 -1.7 177,643 - ABZR87_RS17060 0.74 -1.4 177,643 - ABZR87_RS17060 0.74 +0.5 177,652 + ABZR87_RS17060 0.76 -1.6 177,652 + ABZR87_RS17060 0.76 +0.3 177,652 + ABZR87_RS17060 0.76 +0.2 177,652 + ABZR87_RS17060 0.76 -0.4 177,653 - ABZR87_RS17060 0.76 -0.6 177,746 - +1.6 177,746 - -1.2 177,782 + -0.6 177,782 + +0.3 177,783 - -1.1 177,815 - +1.2 177,815 - -1.0 177,999 + ABZR87_RS17065 0.37 -1.3 178,000 - ABZR87_RS17065 0.37 -1.9 178,000 - ABZR87_RS17065 0.37 -0.2 178,080 + ABZR87_RS17065 0.61 +1.1 178,080 + ABZR87_RS17065 0.61 -0.3 178,081 - ABZR87_RS17065 0.62 +1.3 178,161 + ABZR87_RS17065 0.86 -1.0 178,209 + -1.1 178,209 + +0.5 178,210 - +0.8 178,210 - -1.1 178,210 - -0.7 178,329 + ABZR87_RS17070 0.13 -0.1 178,330 - ABZR87_RS17070 0.13 -1.4 178,330 - ABZR87_RS17070 0.13 +2.3 178,330 - ABZR87_RS17070 0.13 -0.9 178,330 - ABZR87_RS17070 0.13 +0.3 178,330 - ABZR87_RS17070 0.13 -2.4 178,386 - ABZR87_RS17070 0.20 -0.7 178,491 + ABZR87_RS17070 0.33 -1.0 178,491 + ABZR87_RS17070 0.33 +1.2 178,491 + ABZR87_RS17070 0.33 +0.1 178,491 + ABZR87_RS17070 0.33 +0.0 178,492 - ABZR87_RS17070 0.33 -0.9 178,497 + ABZR87_RS17070 0.34 +0.3 178,498 - ABZR87_RS17070 0.34 +0.5 178,498 - ABZR87_RS17070 0.34 -0.5 178,728 + ABZR87_RS17070 0.63 +1.9 178,729 - ABZR87_RS17070 0.63 +1.0 178,899 + ABZR87_RS17070 0.84 +0.8 178,899 + ABZR87_RS17070 0.84 +0.0 178,899 + ABZR87_RS17070 0.84 +0.6 178,899 + ABZR87_RS17070 0.84 -0.7 178,899 + ABZR87_RS17070 0.84 -1.1 178,900 - ABZR87_RS17070 0.84 +2.9 178,900 - ABZR87_RS17070 0.84 +0.8 178,900 - ABZR87_RS17070 0.84 +1.1 179,028 + +0.8 179,073 + +0.0 179,074 - +1.9 179,085 + +0.0 179,085 + -1.3 179,137 + -0.2 179,137 + +0.7 179,138 - +0.3 179,192 + +2.3 179,193 - +1.6 179,193 - -0.4 179,193 - +0.0 179,216 + +1.0 179,217 - -2.2 179,217 - -0.9 179,375 + ABZR87_RS17075 0.37 -0.8 179,376 - ABZR87_RS17075 0.37 +1.4 179,376 - ABZR87_RS17075 0.37 +0.3 179,376 - ABZR87_RS17075 0.37 +0.2 179,388 + ABZR87_RS17075 0.39 +0.6 179,388 + ABZR87_RS17075 0.39 -0.6 179,388 + ABZR87_RS17075 0.39 -0.6 179,462 + ABZR87_RS17075 0.54 -1.4 179,462 + ABZR87_RS17075 0.54 +0.3 179,462 + ABZR87_RS17075 0.54 -1.3 179,463 - ABZR87_RS17075 0.54 +0.0 179,463 - ABZR87_RS17075 0.54 +1.2 179,463 - ABZR87_RS17075 0.54 -2.1 179,550 - ABZR87_RS17075 0.71 +0.3 179,550 - ABZR87_RS17075 0.71 -0.2 179,579 + ABZR87_RS17075 0.77 -0.5 179,579 + ABZR87_RS17075 0.77 -0.3 179,580 - ABZR87_RS17075 0.77 -0.1 179,580 - ABZR87_RS17075 0.77 +0.5 179,580 - ABZR87_RS17075 0.77 -0.3 179,620 + ABZR87_RS17075 0.85 +0.2 179,620 + ABZR87_RS17075 0.85 +2.0 179,620 + ABZR87_RS17075 0.85 -0.1 179,620 + ABZR87_RS17075 0.85 -0.6 179,688 + -0.8 179,689 - -1.5 179,689 - -1.0 179,689 - -0.1 179,819 - -0.5 179,823 + -1.6 179,823 + -0.7 179,823 + +0.3 179,824 - +2.1 180,008 - ABZR87_RS17080 0.36 -0.1 180,015 + ABZR87_RS17080 0.37 +0.6
Or see this region's nucleotide sequence