Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16580 and ABZR87_RS16585 overlap by 17 nucleotides ABZR87_RS16585 and ABZR87_RS16590 are separated by 63 nucleotides ABZR87_RS16590 and ABZR87_RS16595 are separated by 19 nucleotides
ABZR87_RS16580: ABZR87_RS16580 - ABC transporter ATP-binding protein, at 68,271 to 69,125
_RS16580
ABZR87_RS16585: ABZR87_RS16585 - OsmC family protein, at 69,109 to 69,699
_RS16585
ABZR87_RS16590: ABZR87_RS16590 - ABC transporter permease, at 69,763 to 71,601
_RS16590
ABZR87_RS16595: ABZR87_RS16595 - ABC transporter substrate-binding protein, at 71,621 to 72,754
_RS16595
Position (kb) 69
70
71
72 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 69.046 kb on - strand at 69.243 kb on + strand, within ABZR87_RS16585 at 69.329 kb on + strand, within ABZR87_RS16585 at 69.330 kb on - strand, within ABZR87_RS16585 at 69.330 kb on - strand, within ABZR87_RS16585 at 69.444 kb on + strand, within ABZR87_RS16585 at 69.444 kb on + strand, within ABZR87_RS16585 at 69.444 kb on + strand, within ABZR87_RS16585 at 69.444 kb on + strand, within ABZR87_RS16585 at 69.445 kb on - strand, within ABZR87_RS16585 at 69.445 kb on - strand, within ABZR87_RS16585 at 69.445 kb on - strand, within ABZR87_RS16585 at 69.506 kb on + strand, within ABZR87_RS16585 at 69.507 kb on - strand, within ABZR87_RS16585 at 69.559 kb on + strand, within ABZR87_RS16585 at 69.656 kb on - strand at 69.681 kb on - strand at 69.986 kb on + strand, within ABZR87_RS16590 at 69.986 kb on + strand, within ABZR87_RS16590 at 69.986 kb on + strand, within ABZR87_RS16590 at 69.986 kb on + strand, within ABZR87_RS16590 at 69.986 kb on + strand, within ABZR87_RS16590 at 69.987 kb on - strand, within ABZR87_RS16590 at 69.987 kb on - strand, within ABZR87_RS16590 at 69.987 kb on - strand, within ABZR87_RS16590 at 69.987 kb on - strand, within ABZR87_RS16590 at 69.993 kb on - strand, within ABZR87_RS16590 at 69.993 kb on - strand, within ABZR87_RS16590 at 69.993 kb on - strand, within ABZR87_RS16590 at 70.061 kb on + strand, within ABZR87_RS16590 at 70.062 kb on - strand, within ABZR87_RS16590 at 70.199 kb on + strand, within ABZR87_RS16590 at 70.199 kb on + strand, within ABZR87_RS16590 at 70.199 kb on + strand, within ABZR87_RS16590 at 70.200 kb on - strand, within ABZR87_RS16590 at 70.346 kb on + strand, within ABZR87_RS16590 at 70.346 kb on + strand, within ABZR87_RS16590 at 70.346 kb on + strand, within ABZR87_RS16590 at 70.346 kb on + strand, within ABZR87_RS16590 at 70.346 kb on + strand, within ABZR87_RS16590 at 70.346 kb on + strand, within ABZR87_RS16590 at 70.346 kb on + strand, within ABZR87_RS16590 at 70.346 kb on + strand, within ABZR87_RS16590 at 70.347 kb on - strand, within ABZR87_RS16590 at 70.347 kb on - strand, within ABZR87_RS16590 at 70.347 kb on - strand, within ABZR87_RS16590 at 70.347 kb on - strand, within ABZR87_RS16590 at 70.347 kb on - strand, within ABZR87_RS16590 at 70.472 kb on + strand, within ABZR87_RS16590 at 70.472 kb on + strand, within ABZR87_RS16590 at 70.472 kb on + strand, within ABZR87_RS16590 at 70.472 kb on + strand, within ABZR87_RS16590 at 70.562 kb on + strand, within ABZR87_RS16590 at 70.562 kb on + strand, within ABZR87_RS16590 at 70.562 kb on + strand, within ABZR87_RS16590 at 70.582 kb on + strand, within ABZR87_RS16590 at 70.582 kb on + strand, within ABZR87_RS16590 at 70.595 kb on + strand, within ABZR87_RS16590 at 70.595 kb on + strand, within ABZR87_RS16590 at 70.595 kb on + strand, within ABZR87_RS16590 at 70.596 kb on - strand, within ABZR87_RS16590 at 70.596 kb on - strand, within ABZR87_RS16590 at 70.739 kb on - strand, within ABZR87_RS16590 at 70.739 kb on - strand, within ABZR87_RS16590 at 70.739 kb on - strand, within ABZR87_RS16590 at 70.739 kb on - strand, within ABZR87_RS16590 at 70.826 kb on + strand, within ABZR87_RS16590 at 70.826 kb on + strand, within ABZR87_RS16590 at 70.826 kb on + strand, within ABZR87_RS16590 at 70.826 kb on + strand, within ABZR87_RS16590 at 70.827 kb on - strand, within ABZR87_RS16590 at 70.955 kb on + strand, within ABZR87_RS16590 at 70.955 kb on + strand, within ABZR87_RS16590 at 70.955 kb on + strand, within ABZR87_RS16590 at 70.955 kb on + strand, within ABZR87_RS16590 at 70.955 kb on + strand, within ABZR87_RS16590 at 70.955 kb on + strand, within ABZR87_RS16590 at 70.956 kb on - strand, within ABZR87_RS16590 at 70.956 kb on - strand, within ABZR87_RS16590 at 70.956 kb on - strand, within ABZR87_RS16590 at 70.956 kb on - strand, within ABZR87_RS16590 at 70.956 kb on - strand, within ABZR87_RS16590 at 70.956 kb on - strand, within ABZR87_RS16590 at 70.958 kb on + strand, within ABZR87_RS16590 at 70.958 kb on + strand, within ABZR87_RS16590 at 70.958 kb on + strand, within ABZR87_RS16590 at 70.958 kb on + strand, within ABZR87_RS16590 at 70.958 kb on + strand, within ABZR87_RS16590 at 70.958 kb on + strand, within ABZR87_RS16590 at 70.958 kb on + strand, within ABZR87_RS16590 at 70.959 kb on - strand, within ABZR87_RS16590 at 70.959 kb on - strand, within ABZR87_RS16590 at 70.959 kb on - strand, within ABZR87_RS16590 at 70.959 kb on - strand, within ABZR87_RS16590 at 71.105 kb on + strand, within ABZR87_RS16590 at 71.106 kb on - strand, within ABZR87_RS16590 at 71.116 kb on + strand, within ABZR87_RS16590 at 71.116 kb on + strand, within ABZR87_RS16590 at 71.276 kb on + strand, within ABZR87_RS16590 at 71.276 kb on + strand, within ABZR87_RS16590 at 71.276 kb on + strand, within ABZR87_RS16590 at 71.276 kb on + strand, within ABZR87_RS16590 at 71.277 kb on - strand, within ABZR87_RS16590 at 71.457 kb on + strand at 71.457 kb on + strand at 71.458 kb on - strand at 71.458 kb on - strand at 71.459 kb on + strand at 71.534 kb on + strand at 71.534 kb on + strand at 71.534 kb on + strand at 71.534 kb on + strand at 71.534 kb on + strand at 71.534 kb on + strand at 71.534 kb on + strand at 71.535 kb on - strand at 71.535 kb on - strand at 71.535 kb on - strand at 71.535 kb on - strand at 71.538 kb on + strand at 71.538 kb on + strand at 71.538 kb on + strand at 71.538 kb on + strand at 71.539 kb on - strand at 71.539 kb on - strand at 71.539 kb on - strand at 71.539 kb on - strand at 71.567 kb on + strand at 71.568 kb on - strand at 71.883 kb on + strand, within ABZR87_RS16595 at 71.883 kb on + strand, within ABZR87_RS16595 at 71.883 kb on + strand, within ABZR87_RS16595 at 71.884 kb on - strand, within ABZR87_RS16595 at 71.954 kb on - strand, within ABZR87_RS16595 at 71.954 kb on - strand, within ABZR87_RS16595 at 72.006 kb on + strand, within ABZR87_RS16595 at 72.006 kb on + strand, within ABZR87_RS16595 at 72.006 kb on + strand, within ABZR87_RS16595 at 72.006 kb on + strand, within ABZR87_RS16595 at 72.007 kb on - strand, within ABZR87_RS16595 at 72.007 kb on - strand, within ABZR87_RS16595 at 72.007 kb on - strand, within ABZR87_RS16595 at 72.084 kb on + strand, within ABZR87_RS16595 at 72.084 kb on + strand, within ABZR87_RS16595 at 72.085 kb on - strand, within ABZR87_RS16595 at 72.085 kb on - strand, within ABZR87_RS16595 at 72.087 kb on + strand, within ABZR87_RS16595 at 72.088 kb on - strand, within ABZR87_RS16595 at 72.088 kb on - strand, within ABZR87_RS16595 at 72.174 kb on + strand, within ABZR87_RS16595 at 72.264 kb on + strand, within ABZR87_RS16595 at 72.410 kb on + strand, within ABZR87_RS16595 at 72.410 kb on + strand, within ABZR87_RS16595 at 72.411 kb on - strand, within ABZR87_RS16595 at 72.411 kb on - strand, within ABZR87_RS16595 at 72.429 kb on + strand, within ABZR87_RS16595 at 72.429 kb on + strand, within ABZR87_RS16595 at 72.430 kb on - strand, within ABZR87_RS16595 at 72.430 kb on - strand, within ABZR87_RS16595 at 72.430 kb on - strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.561 kb on + strand, within ABZR87_RS16595 at 72.562 kb on - strand, within ABZR87_RS16595 at 72.562 kb on - strand, within ABZR87_RS16595 at 72.562 kb on - strand, within ABZR87_RS16595 at 72.562 kb on - strand, within ABZR87_RS16595
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 69,046 - -1.1 69,243 + ABZR87_RS16585 0.23 +1.3 69,329 + ABZR87_RS16585 0.37 -0.2 69,330 - ABZR87_RS16585 0.37 -0.7 69,330 - ABZR87_RS16585 0.37 +0.5 69,444 + ABZR87_RS16585 0.57 -1.2 69,444 + ABZR87_RS16585 0.57 -0.9 69,444 + ABZR87_RS16585 0.57 -0.5 69,444 + ABZR87_RS16585 0.57 -1.4 69,445 - ABZR87_RS16585 0.57 +0.5 69,445 - ABZR87_RS16585 0.57 +0.6 69,445 - ABZR87_RS16585 0.57 +1.0 69,506 + ABZR87_RS16585 0.67 -1.3 69,507 - ABZR87_RS16585 0.67 -1.3 69,559 + ABZR87_RS16585 0.76 +2.9 69,656 - +1.1 69,681 - -0.5 69,986 + ABZR87_RS16590 0.12 +0.5 69,986 + ABZR87_RS16590 0.12 -0.0 69,986 + ABZR87_RS16590 0.12 -0.8 69,986 + ABZR87_RS16590 0.12 -0.3 69,986 + ABZR87_RS16590 0.12 +0.2 69,987 - ABZR87_RS16590 0.12 +0.6 69,987 - ABZR87_RS16590 0.12 +1.9 69,987 - ABZR87_RS16590 0.12 +0.1 69,987 - ABZR87_RS16590 0.12 -1.8 69,993 - ABZR87_RS16590 0.13 -0.2 69,993 - ABZR87_RS16590 0.13 -0.2 69,993 - ABZR87_RS16590 0.13 +0.7 70,061 + ABZR87_RS16590 0.16 -0.7 70,062 - ABZR87_RS16590 0.16 +0.2 70,199 + ABZR87_RS16590 0.24 +0.0 70,199 + ABZR87_RS16590 0.24 -1.1 70,199 + ABZR87_RS16590 0.24 +0.1 70,200 - ABZR87_RS16590 0.24 -1.0 70,346 + ABZR87_RS16590 0.32 -1.3 70,346 + ABZR87_RS16590 0.32 +1.0 70,346 + ABZR87_RS16590 0.32 +0.3 70,346 + ABZR87_RS16590 0.32 -1.9 70,346 + ABZR87_RS16590 0.32 -1.0 70,346 + ABZR87_RS16590 0.32 +1.9 70,346 + ABZR87_RS16590 0.32 -1.1 70,346 + ABZR87_RS16590 0.32 -2.0 70,347 - ABZR87_RS16590 0.32 -1.0 70,347 - ABZR87_RS16590 0.32 +0.1 70,347 - ABZR87_RS16590 0.32 -1.0 70,347 - ABZR87_RS16590 0.32 +1.7 70,347 - ABZR87_RS16590 0.32 -1.1 70,472 + ABZR87_RS16590 0.39 -0.4 70,472 + ABZR87_RS16590 0.39 -1.0 70,472 + ABZR87_RS16590 0.39 -0.5 70,472 + ABZR87_RS16590 0.39 -0.6 70,562 + ABZR87_RS16590 0.43 +0.5 70,562 + ABZR87_RS16590 0.43 +1.1 70,562 + ABZR87_RS16590 0.43 +0.2 70,582 + ABZR87_RS16590 0.45 +1.7 70,582 + ABZR87_RS16590 0.45 -0.1 70,595 + ABZR87_RS16590 0.45 +0.9 70,595 + ABZR87_RS16590 0.45 +1.9 70,595 + ABZR87_RS16590 0.45 -0.3 70,596 - ABZR87_RS16590 0.45 -0.5 70,596 - ABZR87_RS16590 0.45 +0.2 70,739 - ABZR87_RS16590 0.53 -0.6 70,739 - ABZR87_RS16590 0.53 -1.0 70,739 - ABZR87_RS16590 0.53 -0.4 70,739 - ABZR87_RS16590 0.53 -0.7 70,826 + ABZR87_RS16590 0.58 -0.3 70,826 + ABZR87_RS16590 0.58 -0.4 70,826 + ABZR87_RS16590 0.58 -1.9 70,826 + ABZR87_RS16590 0.58 +3.3 70,827 - ABZR87_RS16590 0.58 -2.1 70,955 + ABZR87_RS16590 0.65 +0.2 70,955 + ABZR87_RS16590 0.65 +0.5 70,955 + ABZR87_RS16590 0.65 -0.3 70,955 + ABZR87_RS16590 0.65 -1.8 70,955 + ABZR87_RS16590 0.65 +0.7 70,955 + ABZR87_RS16590 0.65 -0.3 70,956 - ABZR87_RS16590 0.65 +0.8 70,956 - ABZR87_RS16590 0.65 -0.0 70,956 - ABZR87_RS16590 0.65 -0.8 70,956 - ABZR87_RS16590 0.65 +0.7 70,956 - ABZR87_RS16590 0.65 -1.3 70,956 - ABZR87_RS16590 0.65 +2.9 70,958 + ABZR87_RS16590 0.65 -1.5 70,958 + ABZR87_RS16590 0.65 -0.9 70,958 + ABZR87_RS16590 0.65 +0.5 70,958 + ABZR87_RS16590 0.65 -0.6 70,958 + ABZR87_RS16590 0.65 +0.2 70,958 + ABZR87_RS16590 0.65 +1.6 70,958 + ABZR87_RS16590 0.65 -1.6 70,959 - ABZR87_RS16590 0.65 -1.7 70,959 - ABZR87_RS16590 0.65 -0.3 70,959 - ABZR87_RS16590 0.65 +1.3 70,959 - ABZR87_RS16590 0.65 -1.3 71,105 + ABZR87_RS16590 0.73 -1.8 71,106 - ABZR87_RS16590 0.73 +1.0 71,116 + ABZR87_RS16590 0.74 +1.2 71,116 + ABZR87_RS16590 0.74 +0.5 71,276 + ABZR87_RS16590 0.82 -0.8 71,276 + ABZR87_RS16590 0.82 +1.3 71,276 + ABZR87_RS16590 0.82 -2.0 71,276 + ABZR87_RS16590 0.82 +3.0 71,277 - ABZR87_RS16590 0.82 -0.3 71,457 + +0.3 71,457 + +0.5 71,458 - +1.0 71,458 - -0.1 71,459 + +0.5 71,534 + -0.2 71,534 + +1.6 71,534 + +0.2 71,534 + +1.7 71,534 + +0.6 71,534 + +0.2 71,534 + +0.6 71,535 - -0.2 71,535 - -0.9 71,535 - +1.9 71,535 - -2.2 71,538 + -0.4 71,538 + +1.0 71,538 + +1.1 71,538 + -0.1 71,539 - -1.5 71,539 - -1.2 71,539 - -0.4 71,539 - -0.1 71,567 + -1.1 71,568 - -1.4 71,883 + ABZR87_RS16595 0.23 +0.5 71,883 + ABZR87_RS16595 0.23 -0.5 71,883 + ABZR87_RS16595 0.23 -0.9 71,884 - ABZR87_RS16595 0.23 -2.6 71,954 - ABZR87_RS16595 0.29 +0.7 71,954 - ABZR87_RS16595 0.29 -0.7 72,006 + ABZR87_RS16595 0.34 -2.2 72,006 + ABZR87_RS16595 0.34 -1.9 72,006 + ABZR87_RS16595 0.34 -2.0 72,006 + ABZR87_RS16595 0.34 +1.2 72,007 - ABZR87_RS16595 0.34 +2.3 72,007 - ABZR87_RS16595 0.34 +0.9 72,007 - ABZR87_RS16595 0.34 -1.1 72,084 + ABZR87_RS16595 0.41 -0.8 72,084 + ABZR87_RS16595 0.41 +0.0 72,085 - ABZR87_RS16595 0.41 -0.6 72,085 - ABZR87_RS16595 0.41 +0.2 72,087 + ABZR87_RS16595 0.41 +0.0 72,088 - ABZR87_RS16595 0.41 +0.2 72,088 - ABZR87_RS16595 0.41 -0.8 72,174 + ABZR87_RS16595 0.49 -1.2 72,264 + ABZR87_RS16595 0.57 -1.1 72,410 + ABZR87_RS16595 0.70 +0.2 72,410 + ABZR87_RS16595 0.70 +0.1 72,411 - ABZR87_RS16595 0.70 +1.1 72,411 - ABZR87_RS16595 0.70 +0.7 72,429 + ABZR87_RS16595 0.71 +0.1 72,429 + ABZR87_RS16595 0.71 -0.1 72,430 - ABZR87_RS16595 0.71 +1.8 72,430 - ABZR87_RS16595 0.71 -1.8 72,430 - ABZR87_RS16595 0.71 -0.3 72,561 + ABZR87_RS16595 0.83 -0.1 72,561 + ABZR87_RS16595 0.83 +0.5 72,561 + ABZR87_RS16595 0.83 -0.2 72,561 + ABZR87_RS16595 0.83 +1.4 72,561 + ABZR87_RS16595 0.83 -0.5 72,561 + ABZR87_RS16595 0.83 +0.1 72,562 - ABZR87_RS16595 0.83 +1.0 72,562 - ABZR87_RS16595 0.83 -0.0 72,562 - ABZR87_RS16595 0.83 -0.9 72,562 - ABZR87_RS16595 0.83 -0.8
Or see this region's nucleotide sequence