Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16565

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16555 and ABZR87_RS16560 overlap by 4 nucleotidesABZR87_RS16560 and ABZR87_RS16565 are separated by 19 nucleotidesABZR87_RS16565 and ABZR87_RS16570 are separated by 143 nucleotides ABZR87_RS16555: ABZR87_RS16555 - AMP-binding protein, at 64,021 to 65,637 _RS16555 ABZR87_RS16560: ABZR87_RS16560 - thioesterase family protein, at 65,634 to 66,062 _RS16560 ABZR87_RS16565: ABZR87_RS16565 - RidA family protein, at 66,082 to 66,474 _RS16565 ABZR87_RS16570: ABZR87_RS16570 - VOC family protein, at 66,618 to 67,469 _RS16570 Position (kb) 66 67Strain fitness (log2 ratio) -2 -1 0 1 2at 65.213 kb on - strand, within ABZR87_RS16555at 65.239 kb on + strand, within ABZR87_RS16555at 65.240 kb on - strand, within ABZR87_RS16555at 65.275 kb on + strand, within ABZR87_RS16555at 65.275 kb on + strand, within ABZR87_RS16555at 65.276 kb on - strand, within ABZR87_RS16555at 65.276 kb on - strand, within ABZR87_RS16555at 65.276 kb on - strand, within ABZR87_RS16555at 65.276 kb on - strand, within ABZR87_RS16555at 65.276 kb on - strand, within ABZR87_RS16555at 65.276 kb on - strand, within ABZR87_RS16555at 65.296 kb on + strand, within ABZR87_RS16555at 65.297 kb on - strand, within ABZR87_RS16555at 65.297 kb on - strand, within ABZR87_RS16555at 65.300 kb on + strand, within ABZR87_RS16555at 65.305 kb on + strand, within ABZR87_RS16555at 65.306 kb on - strand, within ABZR87_RS16555at 65.306 kb on - strand, within ABZR87_RS16555at 65.345 kb on - strand, within ABZR87_RS16555at 65.462 kb on + strand, within ABZR87_RS16555at 65.539 kb on + strandat 65.539 kb on + strandat 65.540 kb on - strandat 65.540 kb on - strandat 65.545 kb on + strandat 65.545 kb on + strandat 65.546 kb on - strandat 65.643 kb on + strandat 65.644 kb on - strandat 65.775 kb on + strand, within ABZR87_RS16560at 65.776 kb on - strand, within ABZR87_RS16560at 65.885 kb on - strand, within ABZR87_RS16560at 65.885 kb on - strand, within ABZR87_RS16560at 65.885 kb on - strand, within ABZR87_RS16560at 65.975 kb on + strand, within ABZR87_RS16560at 65.988 kb on - strand, within ABZR87_RS16560at 65.988 kb on - strand, within ABZR87_RS16560at 65.988 kb on - strand, within ABZR87_RS16560at 66.060 kb on + strandat 66.510 kb on + strandat 66.519 kb on - strandat 66.519 kb on - strandat 66.680 kb on - strandat 66.780 kb on - strand, within ABZR87_RS16570at 67.002 kb on + strand, within ABZR87_RS16570at 67.003 kb on - strand, within ABZR87_RS16570at 67.166 kb on - strand, within ABZR87_RS16570at 67.237 kb on + strand, within ABZR87_RS16570at 67.237 kb on + strand, within ABZR87_RS16570at 67.237 kb on + strand, within ABZR87_RS16570at 67.238 kb on - strand, within ABZR87_RS16570at 67.238 kb on - strand, within ABZR87_RS16570at 67.315 kb on + strand, within ABZR87_RS16570at 67.315 kb on + strand, within ABZR87_RS16570at 67.405 kb on + strandat 67.405 kb on + strandat 67.406 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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65,213 - ABZR87_RS16555 0.74 +1.1
65,239 + ABZR87_RS16555 0.75 -0.7
65,240 - ABZR87_RS16555 0.75 +0.6
65,275 + ABZR87_RS16555 0.78 -2.3
65,275 + ABZR87_RS16555 0.78 -0.2
65,276 - ABZR87_RS16555 0.78 -1.9
65,276 - ABZR87_RS16555 0.78 +0.4
65,276 - ABZR87_RS16555 0.78 +1.2
65,276 - ABZR87_RS16555 0.78 -0.3
65,276 - ABZR87_RS16555 0.78 +0.2
65,276 - ABZR87_RS16555 0.78 -2.5
65,296 + ABZR87_RS16555 0.79 -0.1
65,297 - ABZR87_RS16555 0.79 +0.9
65,297 - ABZR87_RS16555 0.79 +0.7
65,300 + ABZR87_RS16555 0.79 -1.2
65,305 + ABZR87_RS16555 0.79 +1.6
65,306 - ABZR87_RS16555 0.79 -0.8
65,306 - ABZR87_RS16555 0.79 +1.2
65,345 - ABZR87_RS16555 0.82 +0.3
65,462 + ABZR87_RS16555 0.89 -0.3
65,539 + +2.2
65,539 + -1.6
65,540 - -0.1
65,540 - -1.3
65,545 + -2.0
65,545 + -1.0
65,546 - -0.7
65,643 + +1.0
65,644 - -0.4
65,775 + ABZR87_RS16560 0.33 +2.0
65,776 - ABZR87_RS16560 0.33 -0.1
65,885 - ABZR87_RS16560 0.59 +0.9
65,885 - ABZR87_RS16560 0.59 -1.9
65,885 - ABZR87_RS16560 0.59 +1.0
65,975 + ABZR87_RS16560 0.79 +0.0
65,988 - ABZR87_RS16560 0.83 +1.8
65,988 - ABZR87_RS16560 0.83 -0.9
65,988 - ABZR87_RS16560 0.83 +0.1
66,060 + -0.5
66,510 + +0.0
66,519 - -0.3
66,519 - -1.8
66,680 - -1.7
66,780 - ABZR87_RS16570 0.19 -0.1
67,002 + ABZR87_RS16570 0.45 -0.5
67,003 - ABZR87_RS16570 0.45 -1.8
67,166 - ABZR87_RS16570 0.64 +1.5
67,237 + ABZR87_RS16570 0.73 -1.4
67,237 + ABZR87_RS16570 0.73 +0.5
67,237 + ABZR87_RS16570 0.73 +0.3
67,238 - ABZR87_RS16570 0.73 -0.3
67,238 - ABZR87_RS16570 0.73 +0.1
67,315 + ABZR87_RS16570 0.82 +0.9
67,315 + ABZR87_RS16570 0.82 +1.2
67,405 + -0.1
67,405 + -1.1
67,406 - -1.4

Or see this region's nucleotide sequence