Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16205

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
3,427,377	+		ABZR87_RS16195	0.12	-0.5
3,427,377	+		ABZR87_RS16195	0.12	-0.6
3,427,377	+		ABZR87_RS16195	0.12	+0.4
3,427,377	+		ABZR87_RS16195	0.12	+0.5
3,427,377	+		ABZR87_RS16195	0.12	+0.9
3,427,377	+		ABZR87_RS16195	0.12	-0.6
3,427,377	+		ABZR87_RS16195	0.12	-0.5
3,427,377	+		ABZR87_RS16195	0.12	+0.8
3,427,378	-		ABZR87_RS16195	0.12	-0.5
3,427,378	-		ABZR87_RS16195	0.12	+0.1
3,427,378	-		ABZR87_RS16195	0.12	+0.3
3,427,378	-		ABZR87_RS16195	0.12	-0.5
3,427,378	-		ABZR87_RS16195	0.12	+4.1
3,427,582	+		ABZR87_RS16195	0.49	-0.9
3,427,582	+		ABZR87_RS16195	0.49	-2.0
3,427,582	+		ABZR87_RS16195	0.49	-2.4
3,427,660	+		ABZR87_RS16195	0.63	-0.4
3,427,661	-		ABZR87_RS16195	0.63	-1.5
3,427,908	-				-0.5
3,428,030	+		ABZR87_RS16200	0.26	+0.4
3,428,030	+		ABZR87_RS16200	0.26	-0.4
3,428,030	+		ABZR87_RS16200	0.26	-0.1
3,428,031	-		ABZR87_RS16200	0.26	+0.9
3,428,031	-		ABZR87_RS16200	0.26	+0.2
3,428,031	-		ABZR87_RS16200	0.26	-1.0
3,428,057	-		ABZR87_RS16200	0.35	-0.4
3,428,057	-		ABZR87_RS16200	0.35	+0.9
3,428,057	-		ABZR87_RS16200	0.35	+0.1
3,428,231	+		ABZR87_RS16200	0.89	+1.3
3,428,232	-		ABZR87_RS16200	0.90	+1.7
3,428,481	+		ABZR87_RS16205	0.16	-0.9
3,428,481	+		ABZR87_RS16205	0.16	+0.4
3,428,481	+		ABZR87_RS16205	0.16	+1.1
3,428,481	+		ABZR87_RS16205	0.16	-1.0
3,428,481	+		ABZR87_RS16205	0.16	-1.0
3,428,481	+		ABZR87_RS16205	0.16	+1.2
3,428,481	+		ABZR87_RS16205	0.16	-2.1
3,428,481	+		ABZR87_RS16205	0.16	-0.0
3,428,481	+		ABZR87_RS16205	0.16	-0.6
3,428,481	+		ABZR87_RS16205	0.16	+2.0
3,428,481	+		ABZR87_RS16205	0.16	+0.6
3,428,481	+		ABZR87_RS16205	0.16	-0.5
3,428,481	+		ABZR87_RS16205	0.16	-1.5
3,428,481	+		ABZR87_RS16205	0.16	-0.4
3,428,481	+		ABZR87_RS16205	0.16	+0.7
3,428,481	+		ABZR87_RS16205	0.16	-1.0
3,428,481	+		ABZR87_RS16205	0.16	+2.3
3,428,481	+		ABZR87_RS16205	0.16	+1.1
3,428,482	-		ABZR87_RS16205	0.16	-1.0
3,428,482	-		ABZR87_RS16205	0.16	+0.5
3,428,482	-		ABZR87_RS16205	0.16	+0.2
3,428,482	-		ABZR87_RS16205	0.16	-0.6
3,428,482	-		ABZR87_RS16205	0.16	+0.7
3,428,482	-		ABZR87_RS16205	0.16	-0.7
3,428,482	-		ABZR87_RS16205	0.16	-1.1
3,428,482	-		ABZR87_RS16205	0.16	-0.5
3,428,482	-		ABZR87_RS16205	0.16	-1.1
3,428,482	-		ABZR87_RS16205	0.16	-1.4
3,428,482	-		ABZR87_RS16205	0.16	-2.2
3,428,562	+		ABZR87_RS16205	0.23	+0.8
3,428,562	+		ABZR87_RS16205	0.23	+0.4
3,428,563	-		ABZR87_RS16205	0.23	+1.9
3,428,565	+		ABZR87_RS16205	0.23	-0.5
3,428,565	+		ABZR87_RS16205	0.23	-1.1
3,428,565	+		ABZR87_RS16205	0.23	-0.3
3,428,565	+		ABZR87_RS16205	0.23	+0.2
3,428,565	+		ABZR87_RS16205	0.23	-0.1
3,428,565	+		ABZR87_RS16205	0.23	+1.3
3,428,566	-		ABZR87_RS16205	0.23	-0.6
3,428,566	-		ABZR87_RS16205	0.23	+0.7
3,428,844	+		ABZR87_RS16205	0.47	+0.4
3,428,844	+		ABZR87_RS16205	0.47	+1.3
3,428,844	+		ABZR87_RS16205	0.47	+1.0
3,428,844	+		ABZR87_RS16205	0.47	-0.7
3,428,844	+		ABZR87_RS16205	0.47	-1.0
3,428,844	+		ABZR87_RS16205	0.47	+0.9
3,428,844	+		ABZR87_RS16205	0.47	-1.6
3,428,844	+		ABZR87_RS16205	0.47	+0.7
3,428,845	-		ABZR87_RS16205	0.47	+0.5
3,428,845	-		ABZR87_RS16205	0.47	+0.7
3,428,845	-		ABZR87_RS16205	0.47	+0.9
3,428,845	-		ABZR87_RS16205	0.47	+1.1
3,428,845	-		ABZR87_RS16205	0.47	-1.2
3,428,845	-		ABZR87_RS16205	0.47	-1.1
3,428,845	-		ABZR87_RS16205	0.47	-0.6
3,428,845	-		ABZR87_RS16205	0.47	+0.4
3,428,845	-		ABZR87_RS16205	0.47	-1.1
3,428,845	-		ABZR87_RS16205	0.47	-0.7
3,428,845	-		ABZR87_RS16205	0.47	+1.6
3,428,845	-		ABZR87_RS16205	0.47	+1.8
3,428,845	-		ABZR87_RS16205	0.47	+3.9
3,428,964	+		ABZR87_RS16205	0.57	+0.2
3,429,180	+		ABZR87_RS16205	0.76	-0.9
3,429,341	+		ABZR87_RS16205	0.89	+1.9
3,429,342	-		ABZR87_RS16205	0.90	+0.3
3,429,503	+				+0.0
3,429,503	+				-0.3
3,429,503	+				-0.6
3,429,503	+				+0.2
3,429,504	-				-0.8
3,429,504	-				+0.8
3,429,504	-				+0.4
3,429,515	+		ABZR87_RS16210	0.11	+0.1
3,429,515	+		ABZR87_RS16210	0.11	-1.7
3,429,515	+		ABZR87_RS16210	0.11	+0.9
3,429,516	-		ABZR87_RS16210	0.12	-2.1
3,429,608	+		ABZR87_RS16210	0.49	+0.8
3,429,608	+		ABZR87_RS16210	0.49	+0.3
3,429,608	+		ABZR87_RS16210	0.49	-0.3
3,429,609	-		ABZR87_RS16210	0.50	-0.3
3,429,609	-		ABZR87_RS16210	0.50	-1.9
3,429,609	-		ABZR87_RS16210	0.50	-0.6
3,429,820	+		ABZR87_RS16215	0.14	+1.2
3,429,982	+		ABZR87_RS16215	0.38	-1.0
3,429,983	-		ABZR87_RS16215	0.38	-3.5
3,429,983	-		ABZR87_RS16215	0.38	-1.0
3,430,111	+		ABZR87_RS16215	0.57	-1.1
3,430,111	+		ABZR87_RS16215	0.57	+0.0
3,430,111	+		ABZR87_RS16215	0.57	-1.0
3,430,111	+		ABZR87_RS16215	0.57	-1.4
3,430,111	+		ABZR87_RS16215	0.57	+1.0
3,430,111	+		ABZR87_RS16215	0.57	+5.1
3,430,111	+		ABZR87_RS16215	0.57	-0.4
3,430,112	-		ABZR87_RS16215	0.57	-0.3
3,430,112	-		ABZR87_RS16215	0.57	+0.7
3,430,112	-		ABZR87_RS16215	0.57	+1.2
3,430,112	-		ABZR87_RS16215	0.57	-1.1
3,430,112	-		ABZR87_RS16215	0.57	-1.0
3,430,120	+		ABZR87_RS16215	0.58	-0.6
3,430,121	-		ABZR87_RS16215	0.59	-1.8
3,430,121	-		ABZR87_RS16215	0.59	-0.1
3,430,177	+		ABZR87_RS16215	0.67	-0.7
3,430,178	-		ABZR87_RS16215	0.67	+0.1
3,430,415	+				+1.2
3,430,415	+				+0.7
3,430,416	-				+0.8