Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15425

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15415 and ABZR87_RS15420 overlap by 4 nucleotidesABZR87_RS15420 and ABZR87_RS15425 are separated by 72 nucleotidesABZR87_RS15425 and ABZR87_RS15430 are separated by 21 nucleotidesABZR87_RS15430 and ABZR87_RS15435 overlap by 4 nucleotides ABZR87_RS15415: ABZR87_RS15415 - oxygen-dependent coproporphyrinogen oxidase, at 3,244,778 to 3,245,686 _RS15415 ABZR87_RS15420: ABZR87_RS15420 - nicotinate-nucleotide adenylyltransferase, at 3,245,683 to 3,246,393 _RS15420 ABZR87_RS15425: ABZR87_RS15425 - ribosome silencing factor, at 3,246,466 to 3,247,107 _RS15425 ABZR87_RS15430: ABZR87_RS15430 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 3,247,129 to 3,247,599 _RS15430 ABZR87_RS15435: ABZR87_RS15435 - Maf family protein, at 3,247,596 to 3,248,219 _RS15435 Position (kb) 3246 3247 3248Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3245.682 kb on + strandat 3245.682 kb on + strandat 3245.683 kb on - strandat 3246.465 kb on + strandat 3246.465 kb on + strandat 3246.466 kb on - strandat 3246.470 kb on - strandat 3246.471 kb on + strandat 3246.472 kb on - strandat 3246.482 kb on + strandat 3246.543 kb on + strand, within ABZR87_RS15425at 3246.543 kb on + strand, within ABZR87_RS15425at 3246.543 kb on + strand, within ABZR87_RS15425at 3246.544 kb on - strand, within ABZR87_RS15425at 3246.544 kb on - strand, within ABZR87_RS15425at 3246.544 kb on - strand, within ABZR87_RS15425at 3246.757 kb on + strand, within ABZR87_RS15425at 3246.757 kb on + strand, within ABZR87_RS15425at 3246.757 kb on + strand, within ABZR87_RS15425at 3246.757 kb on + strand, within ABZR87_RS15425at 3246.757 kb on + strand, within ABZR87_RS15425at 3246.758 kb on - strand, within ABZR87_RS15425at 3246.758 kb on - strand, within ABZR87_RS15425at 3246.758 kb on - strand, within ABZR87_RS15425at 3246.758 kb on - strand, within ABZR87_RS15425at 3246.847 kb on + strand, within ABZR87_RS15425at 3246.848 kb on - strand, within ABZR87_RS15425at 3246.848 kb on - strand, within ABZR87_RS15425at 3247.009 kb on - strand, within ABZR87_RS15425at 3247.106 kb on - strandat 3247.106 kb on - strandat 3247.195 kb on + strand, within ABZR87_RS15430at 3247.196 kb on - strand, within ABZR87_RS15430at 3247.196 kb on - strand, within ABZR87_RS15430at 3247.196 kb on - strand, within ABZR87_RS15430at 3247.196 kb on - strand, within ABZR87_RS15430at 3247.232 kb on + strand, within ABZR87_RS15430at 3247.232 kb on + strand, within ABZR87_RS15430at 3247.585 kb on + strandat 3247.585 kb on + strandat 3247.586 kb on - strandat 3247.586 kb on - strandat 3247.595 kb on + strandat 3247.595 kb on + strandat 3247.596 kb on - strandat 3247.596 kb on - strandat 3247.596 kb on - strandat 3247.596 kb on - strandat 3247.629 kb on + strandat 3247.630 kb on - strandat 3247.630 kb on - strandat 3247.765 kb on - strand, within ABZR87_RS15435at 3247.765 kb on - strand, within ABZR87_RS15435at 3247.864 kb on + strand, within ABZR87_RS15435at 3247.865 kb on - strand, within ABZR87_RS15435at 3247.865 kb on - strand, within ABZR87_RS15435at 3248.058 kb on + strand, within ABZR87_RS15435at 3248.058 kb on + strand, within ABZR87_RS15435at 3248.058 kb on + strand, within ABZR87_RS15435at 3248.059 kb on - strand, within ABZR87_RS15435

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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3,245,682 + -0.4
3,245,682 + +0.4
3,245,683 - +0.5
3,246,465 + -1.1
3,246,465 + +0.5
3,246,466 - +1.1
3,246,470 - -1.0
3,246,471 + +4.1
3,246,472 - +1.4
3,246,482 + +3.5
3,246,543 + ABZR87_RS15425 0.12 -1.1
3,246,543 + ABZR87_RS15425 0.12 +1.2
3,246,543 + ABZR87_RS15425 0.12 +0.2
3,246,544 - ABZR87_RS15425 0.12 -2.6
3,246,544 - ABZR87_RS15425 0.12 -1.5
3,246,544 - ABZR87_RS15425 0.12 +1.8
3,246,757 + ABZR87_RS15425 0.45 +0.1
3,246,757 + ABZR87_RS15425 0.45 +1.1
3,246,757 + ABZR87_RS15425 0.45 -0.8
3,246,757 + ABZR87_RS15425 0.45 -0.3
3,246,757 + ABZR87_RS15425 0.45 +2.7
3,246,758 - ABZR87_RS15425 0.45 -1.0
3,246,758 - ABZR87_RS15425 0.45 -0.5
3,246,758 - ABZR87_RS15425 0.45 -0.9
3,246,758 - ABZR87_RS15425 0.45 -1.3
3,246,847 + ABZR87_RS15425 0.59 -0.2
3,246,848 - ABZR87_RS15425 0.60 +0.1
3,246,848 - ABZR87_RS15425 0.60 -0.3
3,247,009 - ABZR87_RS15425 0.85 +0.6
3,247,106 - +0.3
3,247,106 - -1.2
3,247,195 + ABZR87_RS15430 0.14 +3.5
3,247,196 - ABZR87_RS15430 0.14 +0.1
3,247,196 - ABZR87_RS15430 0.14 -1.1
3,247,196 - ABZR87_RS15430 0.14 -0.6
3,247,196 - ABZR87_RS15430 0.14 +1.9
3,247,232 + ABZR87_RS15430 0.22 +1.5
3,247,232 + ABZR87_RS15430 0.22 +0.6
3,247,585 + -1.7
3,247,585 + -0.1
3,247,586 - +0.3
3,247,586 - -0.3
3,247,595 + -0.3
3,247,595 + -1.3
3,247,596 - -0.9
3,247,596 - -0.8
3,247,596 - +1.0
3,247,596 - +0.7
3,247,629 + -0.7
3,247,630 - -1.1
3,247,630 - -0.3
3,247,765 - ABZR87_RS15435 0.27 +1.1
3,247,765 - ABZR87_RS15435 0.27 -0.7
3,247,864 + ABZR87_RS15435 0.43 +3.1
3,247,865 - ABZR87_RS15435 0.43 +0.5
3,247,865 - ABZR87_RS15435 0.43 -0.6
3,248,058 + ABZR87_RS15435 0.74 -1.0
3,248,058 + ABZR87_RS15435 0.74 -0.4
3,248,058 + ABZR87_RS15435 0.74 +0.5
3,248,059 - ABZR87_RS15435 0.74 -0.0

Or see this region's nucleotide sequence