Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10180

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
2,158,954	+		ABZR87_RS10175	0.17	-0.6
2,158,954	+		ABZR87_RS10175	0.17	+0.3
2,158,955	-		ABZR87_RS10175	0.17	-0.5
2,158,955	-		ABZR87_RS10175	0.17	+0.1
2,158,972	+		ABZR87_RS10175	0.19	-1.4
2,158,972	+		ABZR87_RS10175	0.19	-0.1
2,158,973	-		ABZR87_RS10175	0.19	+1.7
2,159,113	+		ABZR87_RS10175	0.32	+2.0
2,159,171	+		ABZR87_RS10175	0.37	-1.8
2,159,178	+		ABZR87_RS10175	0.38	-1.6
2,159,206	+		ABZR87_RS10175	0.40	-1.3
2,159,296	+		ABZR87_RS10175	0.48	+0.8
2,159,296	+		ABZR87_RS10175	0.48	+1.7
2,159,301	+		ABZR87_RS10175	0.49	+0.2
2,159,316	+		ABZR87_RS10175	0.50	-1.0
2,159,316	+		ABZR87_RS10175	0.50	-0.5
2,159,317	-		ABZR87_RS10175	0.50	-1.5
2,159,464	+		ABZR87_RS10175	0.64	-1.3
2,159,465	-		ABZR87_RS10175	0.64	-0.2
2,159,759	+				-1.2
2,159,809	+				-1.2
2,159,809	+				-1.1
2,159,810	-				-2.7
2,159,838	+				-0.5
2,159,838	+				-0.6
2,159,839	-				-0.1
2,159,839	-				+0.5
2,159,861	-				-0.2
2,159,861	-				-0.9
2,159,922	-				+0.4
2,159,953	+				-3.1
2,159,954	-				+1.2
2,160,071	+				-0.4
2,160,071	+				+2.6
2,160,071	+				+0.8
2,160,071	+				+0.1
2,160,071	+				-0.1
2,160,072	-				+1.2
2,160,072	-				-0.5
2,160,072	-				-0.1
2,160,072	-				+0.3
2,160,072	-				-2.8
2,160,151	+		ABZR87_RS10180	0.13	+0.1
2,160,151	+		ABZR87_RS10180	0.13	-1.5
2,160,152	-		ABZR87_RS10180	0.13	+0.1
2,160,152	-		ABZR87_RS10180	0.13	-0.5
2,160,326	+		ABZR87_RS10180	0.25	+2.6
2,160,326	+		ABZR87_RS10180	0.25	+0.7
2,160,326	+		ABZR87_RS10180	0.25	-0.0
2,160,327	-		ABZR87_RS10180	0.25	-1.7
2,160,327	-		ABZR87_RS10180	0.25	-2.2
2,160,327	-		ABZR87_RS10180	0.25	+1.8
2,160,327	-		ABZR87_RS10180	0.25	-0.8
2,160,327	-		ABZR87_RS10180	0.25	-0.9
2,160,371	+		ABZR87_RS10180	0.28	-1.0
2,160,371	+		ABZR87_RS10180	0.28	-1.7
2,160,371	+		ABZR87_RS10180	0.28	+1.2
2,160,371	+		ABZR87_RS10180	0.28	+2.5
2,160,372	-		ABZR87_RS10180	0.28	+1.3
2,160,372	-		ABZR87_RS10180	0.28	-0.5
2,160,372	-		ABZR87_RS10180	0.28	+0.6
2,160,372	-		ABZR87_RS10180	0.28	+0.1
2,160,553	+		ABZR87_RS10180	0.40	-0.2
2,160,553	+		ABZR87_RS10180	0.40	+2.0
2,160,554	-		ABZR87_RS10180	0.40	+0.9
2,160,554	-		ABZR87_RS10180	0.40	+0.2
2,160,554	-		ABZR87_RS10180	0.40	+0.2
2,160,603	-		ABZR87_RS10180	0.43	+0.5
2,160,704	+		ABZR87_RS10180	0.50	+0.9
2,160,704	+		ABZR87_RS10180	0.50	+0.7
2,160,704	+		ABZR87_RS10180	0.50	+1.9
2,160,704	+		ABZR87_RS10180	0.50	-1.8
2,160,704	+		ABZR87_RS10180	0.50	-2.2
2,160,704	+		ABZR87_RS10180	0.50	-0.0
2,160,705	-		ABZR87_RS10180	0.50	-1.0
2,160,705	-		ABZR87_RS10180	0.50	-1.2
2,160,705	-		ABZR87_RS10180	0.50	-0.5
2,160,705	-		ABZR87_RS10180	0.50	-1.9
2,160,705	-		ABZR87_RS10180	0.50	+0.9
2,160,705	-		ABZR87_RS10180	0.50	+0.5
2,160,722	+		ABZR87_RS10180	0.51	+1.6
2,160,722	+		ABZR87_RS10180	0.51	-1.1
2,160,723	-		ABZR87_RS10180	0.51	-1.1
2,160,884	+		ABZR87_RS10180	0.62	-0.9
2,160,884	+		ABZR87_RS10180	0.62	+2.0
2,160,884	+		ABZR87_RS10180	0.62	+0.6
2,160,885	-		ABZR87_RS10180	0.62	-0.2
2,160,885	-		ABZR87_RS10180	0.62	-0.8
2,160,885	-		ABZR87_RS10180	0.62	-1.9
2,160,885	-		ABZR87_RS10180	0.62	+1.9
2,160,885	-		ABZR87_RS10180	0.62	-0.2
2,160,885	-		ABZR87_RS10180	0.62	+0.4
2,160,885	-		ABZR87_RS10180	0.62	-0.4
2,160,885	-		ABZR87_RS10180	0.62	-0.2
2,160,885	-		ABZR87_RS10180	0.62	-1.3
2,160,885	-		ABZR87_RS10180	0.62	-1.0
2,160,888	+		ABZR87_RS10180	0.62	-0.9
2,160,888	+		ABZR87_RS10180	0.62	-0.0
2,160,888	+		ABZR87_RS10180	0.62	-0.3
2,160,888	+		ABZR87_RS10180	0.62	-1.3
2,160,888	+		ABZR87_RS10180	0.62	-0.4
2,160,888	+		ABZR87_RS10180	0.62	-0.3
2,160,889	-		ABZR87_RS10180	0.62	-0.6
2,160,889	-		ABZR87_RS10180	0.62	+0.5
2,160,889	-		ABZR87_RS10180	0.62	+3.1
2,160,889	-		ABZR87_RS10180	0.62	-0.2
2,160,889	-		ABZR87_RS10180	0.62	+0.3
2,160,889	-		ABZR87_RS10180	0.62	+0.5
2,160,956	+		ABZR87_RS10180	0.67	-0.1
2,160,957	-		ABZR87_RS10180	0.67	-0.3
2,160,957	-		ABZR87_RS10180	0.67	-1.2
2,160,970	+		ABZR87_RS10180	0.68	-0.2
2,161,138	+		ABZR87_RS10180	0.79	+0.4
2,161,139	-		ABZR87_RS10180	0.79	-0.7
2,161,139	-		ABZR87_RS10180	0.79	+1.7
2,161,390	-				-1.2
2,161,390	-				-0.6
2,161,467	+				+0.4
2,161,467	+				+1.2
2,161,468	-				+1.4
2,161,468	-				-1.5
2,161,468	-				-0.1
2,161,468	-				+1.1
2,161,486	+		ABZR87_RS10185	0.11	-2.2
2,161,486	+		ABZR87_RS10185	0.11	+1.1
2,161,486	+		ABZR87_RS10185	0.11	+0.6
2,161,487	-		ABZR87_RS10185	0.11	-2.6
2,161,487	-		ABZR87_RS10185	0.11	+0.3
2,161,487	-		ABZR87_RS10185	0.11	-1.1
2,161,487	-		ABZR87_RS10185	0.11	+1.2
2,161,607	+		ABZR87_RS10185	0.55	-0.1
2,161,607	+		ABZR87_RS10185	0.55	-0.0
2,161,607	+		ABZR87_RS10185	0.55	-0.1
2,161,607	+		ABZR87_RS10185	0.55	+0.7
2,161,608	-		ABZR87_RS10185	0.55	-1.1
2,161,608	-		ABZR87_RS10185	0.55	+0.7
2,161,608	-		ABZR87_RS10185	0.55	-1.7
2,161,673	-		ABZR87_RS10185	0.79	-0.1
2,161,685	+		ABZR87_RS10185	0.83	-1.6
2,161,685	+		ABZR87_RS10185	0.83	-0.8
2,161,795	+				-0.8
2,161,852	+				-2.0
2,161,852	+				+0.4
2,161,852	+				-1.3
2,161,852	+				-0.7
2,161,956	+				+0.7
2,161,956	+				-1.0
2,161,962	+				-1.3
2,162,134	+		ABZR87_RS10190	0.10	+0.3
2,162,134	+		ABZR87_RS10190	0.10	+0.9
2,162,134	+		ABZR87_RS10190	0.10	+0.6
2,162,135	-		ABZR87_RS10190	0.10	-0.1
2,162,135	-		ABZR87_RS10190	0.10	-1.5
2,162,136	+		ABZR87_RS10190	0.10	-1.4
2,162,136	+		ABZR87_RS10190	0.10	-1.4
2,162,136	+		ABZR87_RS10190	0.10	-0.0
2,162,136	+		ABZR87_RS10190	0.10	+1.4
2,162,137	-		ABZR87_RS10190	0.10	-1.5
2,162,137	-		ABZR87_RS10190	0.10	-1.3
2,162,158	+		ABZR87_RS10190	0.12	+1.2
2,162,158	+		ABZR87_RS10190	0.12	+0.5
2,162,159	-		ABZR87_RS10190	0.12	+0.4
2,162,203	+		ABZR87_RS10190	0.14	+0.2
2,162,203	+		ABZR87_RS10190	0.14	-0.3
2,162,204	-		ABZR87_RS10190	0.14	+0.7
2,162,297	-		ABZR87_RS10190	0.19	+1.2