Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08265

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS08260 and ABZR87_RS08265 overlap by 4 nucleotidesABZR87_RS08265 and ABZR87_RS08270 overlap by 4 nucleotides ABZR87_RS08260: ABZR87_RS08260 - intermembrane transport protein PqiB, at 1,754,172 to 1,755,815 _RS08260 ABZR87_RS08265: ABZR87_RS08265 - paraquat-inducible protein A, at 1,755,812 to 1,756,549 _RS08265 ABZR87_RS08270: ABZR87_RS08270 - paraquat-inducible protein A, at 1,756,546 to 1,757,325 _RS08270 Position (kb) 1755 1756 1757Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1754.834 kb on - strand, within ABZR87_RS08260at 1754.834 kb on - strand, within ABZR87_RS08260at 1754.834 kb on - strand, within ABZR87_RS08260at 1754.926 kb on + strand, within ABZR87_RS08260at 1754.926 kb on + strand, within ABZR87_RS08260at 1754.927 kb on - strand, within ABZR87_RS08260at 1754.927 kb on - strand, within ABZR87_RS08260at 1754.927 kb on - strand, within ABZR87_RS08260at 1754.927 kb on - strand, within ABZR87_RS08260at 1755.229 kb on + strand, within ABZR87_RS08260at 1755.229 kb on + strand, within ABZR87_RS08260at 1755.230 kb on - strand, within ABZR87_RS08260at 1755.266 kb on - strand, within ABZR87_RS08260at 1755.413 kb on + strand, within ABZR87_RS08260at 1755.414 kb on - strand, within ABZR87_RS08260at 1755.604 kb on + strand, within ABZR87_RS08260at 1755.604 kb on + strand, within ABZR87_RS08260at 1755.604 kb on + strand, within ABZR87_RS08260at 1755.604 kb on + strand, within ABZR87_RS08260at 1755.604 kb on + strand, within ABZR87_RS08260at 1755.605 kb on - strand, within ABZR87_RS08260at 1755.815 kb on + strandat 1756.038 kb on + strand, within ABZR87_RS08265at 1756.039 kb on - strand, within ABZR87_RS08265at 1756.039 kb on - strand, within ABZR87_RS08265at 1756.189 kb on - strand, within ABZR87_RS08265at 1756.241 kb on - strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.582 kb on + strandat 1756.582 kb on + strandat 1756.583 kb on - strandat 1756.583 kb on - strandat 1756.583 kb on - strandat 1756.583 kb on - strandat 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.952 kb on + strand, within ABZR87_RS08270at 1756.953 kb on - strand, within ABZR87_RS08270at 1756.953 kb on - strand, within ABZR87_RS08270at 1756.953 kb on - strand, within ABZR87_RS08270at 1756.958 kb on + strand, within ABZR87_RS08270at 1756.958 kb on + strand, within ABZR87_RS08270at 1756.958 kb on + strand, within ABZR87_RS08270at 1756.959 kb on - strand, within ABZR87_RS08270at 1756.959 kb on - strand, within ABZR87_RS08270at 1756.959 kb on - strand, within ABZR87_RS08270at 1756.959 kb on - strand, within ABZR87_RS08270at 1757.048 kb on + strand, within ABZR87_RS08270at 1757.049 kb on - strand, within ABZR87_RS08270at 1757.112 kb on - strand, within ABZR87_RS08270at 1757.397 kb on - strandat 1757.398 kb on + strandat 1757.398 kb on + strandat 1757.398 kb on + strandat 1757.398 kb on + strandat 1757.398 kb on + strandat 1757.399 kb on - strandat 1757.399 kb on - strandat 1757.399 kb on - strandat 1757.399 kb on - strandat 1757.402 kb on + strandat 1757.403 kb on - strandat 1757.403 kb on - strandat 1757.403 kb on - strandat 1757.416 kb on + strandat 1757.416 kb on + strandat 1757.416 kb on + strandat 1757.416 kb on + strandat 1757.417 kb on - strandat 1757.417 kb on - strandat 1757.417 kb on - strandat 1757.418 kb on + strandat 1757.418 kb on + strandat 1757.464 kb on + strandat 1757.464 kb on + strandat 1757.464 kb on + strandat 1757.464 kb on + strandat 1757.465 kb on - strandat 1757.465 kb on - strandat 1757.465 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
remove
1,754,834 - ABZR87_RS08260 0.40 +0.4
1,754,834 - ABZR87_RS08260 0.40 -0.1
1,754,834 - ABZR87_RS08260 0.40 -0.7
1,754,926 + ABZR87_RS08260 0.46 -1.0
1,754,926 + ABZR87_RS08260 0.46 +2.7
1,754,927 - ABZR87_RS08260 0.46 +1.5
1,754,927 - ABZR87_RS08260 0.46 +1.4
1,754,927 - ABZR87_RS08260 0.46 +0.0
1,754,927 - ABZR87_RS08260 0.46 -0.0
1,755,229 + ABZR87_RS08260 0.64 -0.9
1,755,229 + ABZR87_RS08260 0.64 +1.3
1,755,230 - ABZR87_RS08260 0.64 +1.3
1,755,266 - ABZR87_RS08260 0.67 -1.6
1,755,413 + ABZR87_RS08260 0.75 -1.4
1,755,414 - ABZR87_RS08260 0.76 +0.1
1,755,604 + ABZR87_RS08260 0.87 -0.3
1,755,604 + ABZR87_RS08260 0.87 +0.0
1,755,604 + ABZR87_RS08260 0.87 +2.1
1,755,604 + ABZR87_RS08260 0.87 +1.7
1,755,604 + ABZR87_RS08260 0.87 -0.3
1,755,605 - ABZR87_RS08260 0.87 +1.9
1,755,815 + -1.0
1,756,038 + ABZR87_RS08265 0.31 +0.5
1,756,039 - ABZR87_RS08265 0.31 +2.5
1,756,039 - ABZR87_RS08265 0.31 +0.3
1,756,189 - ABZR87_RS08265 0.51 +1.3
1,756,241 - ABZR87_RS08265 0.58 -0.3
1,756,272 + ABZR87_RS08265 0.62 +0.1
1,756,272 + ABZR87_RS08265 0.62 -1.5
1,756,272 + ABZR87_RS08265 0.62 +0.0
1,756,272 + ABZR87_RS08265 0.62 +0.9
1,756,272 + ABZR87_RS08265 0.62 +2.3
1,756,272 + ABZR87_RS08265 0.62 +1.0
1,756,273 - ABZR87_RS08265 0.62 +0.6
1,756,273 - ABZR87_RS08265 0.62 -1.4
1,756,273 - ABZR87_RS08265 0.62 -0.8
1,756,273 - ABZR87_RS08265 0.62 -1.0
1,756,273 - ABZR87_RS08265 0.62 +0.2
1,756,273 - ABZR87_RS08265 0.62 -0.5
1,756,273 - ABZR87_RS08265 0.62 -0.4
1,756,273 - ABZR87_RS08265 0.62 +0.3
1,756,582 + +1.6
1,756,582 + +0.2
1,756,583 - -0.4
1,756,583 - +0.1
1,756,583 - +0.0
1,756,583 - +0.6
1,756,892 + ABZR87_RS08270 0.44 -1.7
1,756,892 + ABZR87_RS08270 0.44 +1.1
1,756,892 + ABZR87_RS08270 0.44 -0.6
1,756,892 + ABZR87_RS08270 0.44 -1.6
1,756,892 + ABZR87_RS08270 0.44 -0.1
1,756,892 + ABZR87_RS08270 0.44 -0.8
1,756,892 + ABZR87_RS08270 0.44 -0.6
1,756,893 - ABZR87_RS08270 0.44 -0.6
1,756,893 - ABZR87_RS08270 0.44 +0.4
1,756,893 - ABZR87_RS08270 0.44 -0.3
1,756,893 - ABZR87_RS08270 0.44 -1.3
1,756,893 - ABZR87_RS08270 0.44 +0.6
1,756,893 - ABZR87_RS08270 0.44 -0.6
1,756,893 - ABZR87_RS08270 0.44 -0.3
1,756,893 - ABZR87_RS08270 0.44 -0.9
1,756,952 + ABZR87_RS08270 0.52 +1.4
1,756,953 - ABZR87_RS08270 0.52 +0.7
1,756,953 - ABZR87_RS08270 0.52 +2.4
1,756,953 - ABZR87_RS08270 0.52 +1.5
1,756,958 + ABZR87_RS08270 0.53 +0.7
1,756,958 + ABZR87_RS08270 0.53 +0.6
1,756,958 + ABZR87_RS08270 0.53 -0.7
1,756,959 - ABZR87_RS08270 0.53 -0.0
1,756,959 - ABZR87_RS08270 0.53 -0.5
1,756,959 - ABZR87_RS08270 0.53 +3.0
1,756,959 - ABZR87_RS08270 0.53 -1.7
1,757,048 + ABZR87_RS08270 0.64 +0.5
1,757,049 - ABZR87_RS08270 0.64 +3.6
1,757,112 - ABZR87_RS08270 0.73 -0.4
1,757,397 - -0.2
1,757,398 + +2.4
1,757,398 + -0.5
1,757,398 + +1.2
1,757,398 + +1.5
1,757,398 + +0.1
1,757,399 - -0.3
1,757,399 - -1.0
1,757,399 - -1.2
1,757,399 - -0.1
1,757,402 + +0.1
1,757,403 - +2.3
1,757,403 - -0.6
1,757,403 - +0.6
1,757,416 + -0.0
1,757,416 + -0.3
1,757,416 + +0.2
1,757,416 + -0.9
1,757,417 - -0.3
1,757,417 - +1.5
1,757,417 - -1.1
1,757,418 + -1.9
1,757,418 + -1.1
1,757,464 + +0.4
1,757,464 + -0.0
1,757,464 + -1.7
1,757,464 + -0.4
1,757,465 - +0.6
1,757,465 - -0.0
1,757,465 - +0.1

Or see this region's nucleotide sequence