Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08165 and ABZR87_RS08170 are separated by 27 nucleotides ABZR87_RS08170 and ABZR87_RS08175 are separated by 45 nucleotides ABZR87_RS08175 and ABZR87_RS08180 are separated by 175 nucleotides
ABZR87_RS08165: ABZR87_RS08165 - amidase, at 1,737,191 to 1,738,549
_RS08165
ABZR87_RS08170: ABZR87_RS08170 - DUF2848 domain-containing protein, at 1,738,577 to 1,739,254
_RS08170
ABZR87_RS08175: ABZR87_RS08175 - GntR family transcriptional regulator, at 1,739,300 to 1,740,016
_RS08175
ABZR87_RS08180: ABZR87_RS08180 - flavin-dependent oxidoreductase, at 1,740,192 to 1,741,457
_RS08180
Position (kb) 1738
1739
1740 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1737.809 kb on + strand, within ABZR87_RS08165 at 1737.810 kb on - strand, within ABZR87_RS08165 at 1738.416 kb on + strand at 1738.417 kb on - strand at 1738.417 kb on - strand at 1738.608 kb on + strand at 1738.609 kb on - strand at 1738.712 kb on - strand, within ABZR87_RS08170 at 1738.800 kb on + strand, within ABZR87_RS08170 at 1738.935 kb on + strand, within ABZR87_RS08170 at 1738.935 kb on + strand, within ABZR87_RS08170 at 1738.935 kb on + strand, within ABZR87_RS08170 at 1739.001 kb on + strand, within ABZR87_RS08170 at 1739.002 kb on - strand, within ABZR87_RS08170 at 1739.088 kb on + strand, within ABZR87_RS08170 at 1739.088 kb on + strand, within ABZR87_RS08170 at 1739.088 kb on + strand, within ABZR87_RS08170 at 1739.088 kb on + strand, within ABZR87_RS08170 at 1739.088 kb on + strand, within ABZR87_RS08170 at 1739.089 kb on - strand, within ABZR87_RS08170 at 1739.089 kb on - strand, within ABZR87_RS08170 at 1739.089 kb on - strand, within ABZR87_RS08170 at 1739.415 kb on + strand, within ABZR87_RS08175 at 1739.415 kb on + strand, within ABZR87_RS08175 at 1739.415 kb on + strand, within ABZR87_RS08175 at 1739.904 kb on + strand, within ABZR87_RS08175 at 1739.904 kb on + strand, within ABZR87_RS08175 at 1739.904 kb on + strand, within ABZR87_RS08175 at 1740.112 kb on + strand at 1740.112 kb on + strand at 1740.113 kb on - strand at 1740.116 kb on + strand at 1740.116 kb on + strand at 1740.116 kb on + strand at 1740.117 kb on - strand at 1740.117 kb on - strand at 1740.117 kb on - strand at 1740.117 kb on - strand at 1740.117 kb on - strand at 1740.128 kb on + strand at 1740.128 kb on + strand at 1740.129 kb on - strand at 1740.129 kb on - strand at 1740.129 kb on - strand at 1740.129 kb on - strand at 1740.129 kb on - strand at 1740.129 kb on - strand at 1740.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 1,737,809 + ABZR87_RS08165 0.45 +2.0 1,737,810 - ABZR87_RS08165 0.46 +1.4 1,738,416 + -1.3 1,738,417 - -0.5 1,738,417 - -0.5 1,738,608 + -1.4 1,738,609 - +1.5 1,738,712 - ABZR87_RS08170 0.20 -0.3 1,738,800 + ABZR87_RS08170 0.33 +0.3 1,738,935 + ABZR87_RS08170 0.53 -0.4 1,738,935 + ABZR87_RS08170 0.53 +0.9 1,738,935 + ABZR87_RS08170 0.53 +0.2 1,739,001 + ABZR87_RS08170 0.63 -2.1 1,739,002 - ABZR87_RS08170 0.63 +4.5 1,739,088 + ABZR87_RS08170 0.75 +0.3 1,739,088 + ABZR87_RS08170 0.75 -0.8 1,739,088 + ABZR87_RS08170 0.75 +0.3 1,739,088 + ABZR87_RS08170 0.75 +0.9 1,739,088 + ABZR87_RS08170 0.75 -0.6 1,739,089 - ABZR87_RS08170 0.76 -0.0 1,739,089 - ABZR87_RS08170 0.76 +1.6 1,739,089 - ABZR87_RS08170 0.76 +0.2 1,739,415 + ABZR87_RS08175 0.16 +1.1 1,739,415 + ABZR87_RS08175 0.16 -0.8 1,739,415 + ABZR87_RS08175 0.16 -2.0 1,739,904 + ABZR87_RS08175 0.84 +2.7 1,739,904 + ABZR87_RS08175 0.84 -1.3 1,739,904 + ABZR87_RS08175 0.84 +0.5 1,740,112 + +2.6 1,740,112 + +0.6 1,740,113 - -0.3 1,740,116 + -0.8 1,740,116 + +3.7 1,740,116 + +2.1 1,740,117 - +0.6 1,740,117 - -0.0 1,740,117 - +0.6 1,740,117 - -0.6 1,740,117 - -0.3 1,740,128 + +0.4 1,740,128 + +0.9 1,740,129 - -1.6 1,740,129 - +0.9 1,740,129 - -1.0 1,740,129 - +0.2 1,740,129 - +0.2 1,740,129 - -1.7 1,740,129 - +1.2
Or see this region's nucleotide sequence