Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08030

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08020 and ABZR87_RS08025 are separated by 20 nucleotidesABZR87_RS08025 and ABZR87_RS08030 overlap by 8 nucleotidesABZR87_RS08030 and ABZR87_RS08035 are separated by 34 nucleotidesABZR87_RS08035 and ABZR87_RS08040 are separated by 25 nucleotides ABZR87_RS08020: ABZR87_RS08020 - M48 family metalloprotease, at 1,703,719 to 1,705,422 _RS08020 ABZR87_RS08025: ABZR87_RS08025 - DUF2946 family protein, at 1,705,443 to 1,706,024 _RS08025 ABZR87_RS08030: ABZR87_RS08030 - alpha/beta fold hydrolase, at 1,706,017 to 1,707,093 _RS08030 ABZR87_RS08035: ABZR87_RS08035 - nuclear transport factor 2 family protein, at 1,707,128 to 1,707,568 _RS08035 ABZR87_RS08040: ABZR87_RS08040 - lipopolysaccharide heptosyltransferase II, at 1,707,594 to 1,708,619 _RS08040 Position (kb) 1706 1707 1708Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1705.093 kb on + strand, within ABZR87_RS08020at 1705.093 kb on + strand, within ABZR87_RS08020at 1705.093 kb on + strand, within ABZR87_RS08020at 1705.093 kb on + strand, within ABZR87_RS08020at 1705.093 kb on + strand, within ABZR87_RS08020at 1705.094 kb on - strand, within ABZR87_RS08020at 1705.094 kb on - strand, within ABZR87_RS08020at 1705.094 kb on - strand, within ABZR87_RS08020at 1705.094 kb on - strand, within ABZR87_RS08020at 1705.094 kb on - strand, within ABZR87_RS08020at 1705.142 kb on - strand, within ABZR87_RS08020at 1705.142 kb on - strand, within ABZR87_RS08020at 1705.208 kb on - strand, within ABZR87_RS08020at 1705.331 kb on + strandat 1705.333 kb on + strandat 1705.333 kb on + strandat 1705.420 kb on + strandat 1705.421 kb on - strandat 1705.435 kb on + strandat 1705.436 kb on - strandat 1705.639 kb on + strand, within ABZR87_RS08025at 1705.651 kb on + strand, within ABZR87_RS08025at 1705.777 kb on + strand, within ABZR87_RS08025at 1705.778 kb on - strand, within ABZR87_RS08025at 1705.846 kb on + strand, within ABZR87_RS08025at 1705.846 kb on - strand, within ABZR87_RS08025at 1705.847 kb on - strand, within ABZR87_RS08025at 1705.847 kb on - strand, within ABZR87_RS08025at 1705.918 kb on + strand, within ABZR87_RS08025at 1705.918 kb on + strand, within ABZR87_RS08025at 1705.919 kb on - strand, within ABZR87_RS08025at 1706.056 kb on + strandat 1706.056 kb on + strandat 1706.056 kb on + strandat 1706.056 kb on + strandat 1706.056 kb on + strandat 1706.056 kb on + strandat 1706.056 kb on + strandat 1706.056 kb on + strandat 1706.057 kb on - strandat 1706.057 kb on - strandat 1706.057 kb on - strandat 1706.057 kb on - strandat 1706.057 kb on - strandat 1706.297 kb on + strand, within ABZR87_RS08030at 1706.298 kb on - strand, within ABZR87_RS08030at 1706.390 kb on + strand, within ABZR87_RS08030at 1706.391 kb on - strand, within ABZR87_RS08030at 1706.391 kb on - strand, within ABZR87_RS08030at 1706.391 kb on - strand, within ABZR87_RS08030at 1706.459 kb on + strand, within ABZR87_RS08030at 1706.459 kb on + strand, within ABZR87_RS08030at 1706.459 kb on + strand, within ABZR87_RS08030at 1706.459 kb on + strand, within ABZR87_RS08030at 1706.460 kb on - strand, within ABZR87_RS08030at 1706.543 kb on + strand, within ABZR87_RS08030at 1706.543 kb on + strand, within ABZR87_RS08030at 1706.574 kb on - strand, within ABZR87_RS08030at 1706.574 kb on - strand, within ABZR87_RS08030at 1706.574 kb on - strand, within ABZR87_RS08030at 1706.574 kb on - strand, within ABZR87_RS08030at 1706.652 kb on - strand, within ABZR87_RS08030at 1706.653 kb on + strand, within ABZR87_RS08030at 1706.653 kb on + strand, within ABZR87_RS08030at 1706.653 kb on + strand, within ABZR87_RS08030at 1706.653 kb on + strand, within ABZR87_RS08030at 1706.653 kb on + strand, within ABZR87_RS08030at 1706.653 kb on + strand, within ABZR87_RS08030at 1706.653 kb on + strand, within ABZR87_RS08030at 1706.654 kb on - strand, within ABZR87_RS08030at 1706.654 kb on - strand, within ABZR87_RS08030at 1706.654 kb on - strand, within ABZR87_RS08030at 1706.654 kb on - strand, within ABZR87_RS08030at 1706.654 kb on - strand, within ABZR87_RS08030at 1706.699 kb on + strand, within ABZR87_RS08030at 1706.699 kb on + strand, within ABZR87_RS08030at 1706.699 kb on + strand, within ABZR87_RS08030at 1706.700 kb on - strand, within ABZR87_RS08030at 1706.802 kb on - strand, within ABZR87_RS08030at 1706.802 kb on - strand, within ABZR87_RS08030at 1707.129 kb on + strandat 1707.129 kb on + strandat 1707.129 kb on + strandat 1707.130 kb on - strandat 1707.130 kb on - strandat 1707.130 kb on - strandat 1707.240 kb on + strand, within ABZR87_RS08035at 1707.240 kb on + strand, within ABZR87_RS08035at 1707.241 kb on - strand, within ABZR87_RS08035at 1707.255 kb on + strand, within ABZR87_RS08035at 1707.255 kb on + strand, within ABZR87_RS08035at 1707.256 kb on - strand, within ABZR87_RS08035at 1707.256 kb on - strand, within ABZR87_RS08035at 1707.517 kb on - strand, within ABZR87_RS08035at 1707.517 kb on - strand, within ABZR87_RS08035at 1707.595 kb on + strandat 1707.595 kb on + strandat 1707.725 kb on + strand, within ABZR87_RS08040at 1707.726 kb on - strand, within ABZR87_RS08040at 1707.726 kb on - strand, within ABZR87_RS08040at 1707.778 kb on - strand, within ABZR87_RS08040at 1707.778 kb on - strand, within ABZR87_RS08040at 1707.778 kb on - strand, within ABZR87_RS08040at 1708.054 kb on + strand, within ABZR87_RS08040

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,705,093 + ABZR87_RS08020 0.81 -0.1
1,705,093 + ABZR87_RS08020 0.81 +0.2
1,705,093 + ABZR87_RS08020 0.81 +0.3
1,705,093 + ABZR87_RS08020 0.81 -0.4
1,705,093 + ABZR87_RS08020 0.81 -0.4
1,705,094 - ABZR87_RS08020 0.81 -0.9
1,705,094 - ABZR87_RS08020 0.81 -0.2
1,705,094 - ABZR87_RS08020 0.81 +1.0
1,705,094 - ABZR87_RS08020 0.81 +0.3
1,705,094 - ABZR87_RS08020 0.81 -0.3
1,705,142 - ABZR87_RS08020 0.84 -1.3
1,705,142 - ABZR87_RS08020 0.84 +0.5
1,705,208 - ABZR87_RS08020 0.87 +0.4
1,705,331 + -1.2
1,705,333 + +1.4
1,705,333 + -0.8
1,705,420 + +2.8
1,705,421 - +0.2
1,705,435 + +0.4
1,705,436 - -0.7
1,705,639 + ABZR87_RS08025 0.34 +0.6
1,705,651 + ABZR87_RS08025 0.36 -1.1
1,705,777 + ABZR87_RS08025 0.57 +0.2
1,705,778 - ABZR87_RS08025 0.58 -0.3
1,705,846 + ABZR87_RS08025 0.69 -0.2
1,705,846 - ABZR87_RS08025 0.69 -0.4
1,705,847 - ABZR87_RS08025 0.69 +2.1
1,705,847 - ABZR87_RS08025 0.69 -0.7
1,705,918 + ABZR87_RS08025 0.82 -1.5
1,705,918 + ABZR87_RS08025 0.82 +0.3
1,705,919 - ABZR87_RS08025 0.82 -0.9
1,706,056 + -0.1
1,706,056 + +0.4
1,706,056 + +0.1
1,706,056 + +0.9
1,706,056 + +1.3
1,706,056 + -0.2
1,706,056 + -0.5
1,706,056 + +0.6
1,706,057 - +1.1
1,706,057 - +0.3
1,706,057 - +0.4
1,706,057 - -1.6
1,706,057 - +1.0
1,706,297 + ABZR87_RS08030 0.26 -2.9
1,706,298 - ABZR87_RS08030 0.26 -0.1
1,706,390 + ABZR87_RS08030 0.35 -0.4
1,706,391 - ABZR87_RS08030 0.35 +0.3
1,706,391 - ABZR87_RS08030 0.35 +1.5
1,706,391 - ABZR87_RS08030 0.35 -1.9
1,706,459 + ABZR87_RS08030 0.41 -1.0
1,706,459 + ABZR87_RS08030 0.41 -0.0
1,706,459 + ABZR87_RS08030 0.41 +0.6
1,706,459 + ABZR87_RS08030 0.41 +0.3
1,706,460 - ABZR87_RS08030 0.41 -1.8
1,706,543 + ABZR87_RS08030 0.49 -0.6
1,706,543 + ABZR87_RS08030 0.49 -1.9
1,706,574 - ABZR87_RS08030 0.52 +0.4
1,706,574 - ABZR87_RS08030 0.52 +0.1
1,706,574 - ABZR87_RS08030 0.52 +0.1
1,706,574 - ABZR87_RS08030 0.52 -1.8
1,706,652 - ABZR87_RS08030 0.59 +0.5
1,706,653 + ABZR87_RS08030 0.59 -0.0
1,706,653 + ABZR87_RS08030 0.59 +1.9
1,706,653 + ABZR87_RS08030 0.59 -1.6
1,706,653 + ABZR87_RS08030 0.59 -0.0
1,706,653 + ABZR87_RS08030 0.59 -0.3
1,706,653 + ABZR87_RS08030 0.59 +0.2
1,706,653 + ABZR87_RS08030 0.59 -0.3
1,706,654 - ABZR87_RS08030 0.59 -1.0
1,706,654 - ABZR87_RS08030 0.59 +1.5
1,706,654 - ABZR87_RS08030 0.59 +0.3
1,706,654 - ABZR87_RS08030 0.59 +1.3
1,706,654 - ABZR87_RS08030 0.59 -0.7
1,706,699 + ABZR87_RS08030 0.63 -1.7
1,706,699 + ABZR87_RS08030 0.63 +2.2
1,706,699 + ABZR87_RS08030 0.63 +0.2
1,706,700 - ABZR87_RS08030 0.63 +1.8
1,706,802 - ABZR87_RS08030 0.73 -0.6
1,706,802 - ABZR87_RS08030 0.73 -0.3
1,707,129 + -1.5
1,707,129 + -2.0
1,707,129 + -0.0
1,707,130 - +0.5
1,707,130 - -0.5
1,707,130 - -0.5
1,707,240 + ABZR87_RS08035 0.25 +0.2
1,707,240 + ABZR87_RS08035 0.25 -0.1
1,707,241 - ABZR87_RS08035 0.26 +0.9
1,707,255 + ABZR87_RS08035 0.29 -2.0
1,707,255 + ABZR87_RS08035 0.29 -0.4
1,707,256 - ABZR87_RS08035 0.29 +0.1
1,707,256 - ABZR87_RS08035 0.29 +2.0
1,707,517 - ABZR87_RS08035 0.88 -0.8
1,707,517 - ABZR87_RS08035 0.88 +0.2
1,707,595 + +1.4
1,707,595 + -2.2
1,707,725 + ABZR87_RS08040 0.13 -0.6
1,707,726 - ABZR87_RS08040 0.13 -1.8
1,707,726 - ABZR87_RS08040 0.13 -3.3
1,707,778 - ABZR87_RS08040 0.18 -1.6
1,707,778 - ABZR87_RS08040 0.18 -0.5
1,707,778 - ABZR87_RS08040 0.18 -2.1
1,708,054 + ABZR87_RS08040 0.45 -1.8

Or see this region's nucleotide sequence