Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06285

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06280 and ABZR87_RS06285 are separated by 28 nucleotidesABZR87_RS06285 and ABZR87_RS06290 overlap by 1 nucleotidesABZR87_RS06290 and ABZR87_RS06295 are separated by 27 nucleotides ABZR87_RS06280: ABZR87_RS06280 - carboxyl transferase domain-containing protein, at 1,341,465 to 1,343,072 _RS06280 ABZR87_RS06285: ABZR87_RS06285 - YchJ family protein, at 1,343,101 to 1,343,541 _RS06285 ABZR87_RS06290: ABZR87_RS06290 - HAD family phosphatase, at 1,343,541 to 1,344,239 _RS06290 ABZR87_RS06295: ABZR87_RS06295 - acyl-CoA dehydrogenase family protein, at 1,344,267 to 1,345,397 _RS06295 Position (kb) 1343 1344Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1342.204 kb on + strand, within ABZR87_RS06280at 1342.205 kb on - strand, within ABZR87_RS06280at 1342.222 kb on + strand, within ABZR87_RS06280at 1342.334 kb on - strand, within ABZR87_RS06280at 1342.334 kb on - strand, within ABZR87_RS06280at 1342.492 kb on + strand, within ABZR87_RS06280at 1342.492 kb on + strand, within ABZR87_RS06280at 1342.493 kb on - strand, within ABZR87_RS06280at 1342.493 kb on - strand, within ABZR87_RS06280at 1342.570 kb on + strand, within ABZR87_RS06280at 1342.570 kb on + strand, within ABZR87_RS06280at 1342.570 kb on + strand, within ABZR87_RS06280at 1342.571 kb on - strand, within ABZR87_RS06280at 1342.571 kb on - strand, within ABZR87_RS06280at 1342.571 kb on - strand, within ABZR87_RS06280at 1342.651 kb on + strand, within ABZR87_RS06280at 1342.651 kb on + strand, within ABZR87_RS06280at 1342.652 kb on - strand, within ABZR87_RS06280at 1342.652 kb on - strand, within ABZR87_RS06280at 1342.721 kb on - strand, within ABZR87_RS06280at 1342.723 kb on + strand, within ABZR87_RS06280at 1342.723 kb on + strand, within ABZR87_RS06280at 1342.723 kb on + strand, within ABZR87_RS06280at 1342.723 kb on + strand, within ABZR87_RS06280at 1342.723 kb on + strand, within ABZR87_RS06280at 1342.723 kb on + strand, within ABZR87_RS06280at 1342.723 kb on + strand, within ABZR87_RS06280at 1342.723 kb on + strand, within ABZR87_RS06280at 1342.724 kb on - strand, within ABZR87_RS06280at 1342.724 kb on - strand, within ABZR87_RS06280at 1342.724 kb on - strand, within ABZR87_RS06280at 1342.828 kb on + strand, within ABZR87_RS06280at 1342.828 kb on + strand, within ABZR87_RS06280at 1342.829 kb on - strand, within ABZR87_RS06280at 1342.829 kb on - strand, within ABZR87_RS06280at 1342.829 kb on - strand, within ABZR87_RS06280at 1343.062 kb on - strandat 1343.062 kb on - strandat 1343.127 kb on - strandat 1343.372 kb on + strand, within ABZR87_RS06285at 1343.372 kb on + strand, within ABZR87_RS06285at 1343.373 kb on - strand, within ABZR87_RS06285at 1343.393 kb on + strand, within ABZR87_RS06285at 1343.393 kb on + strand, within ABZR87_RS06285at 1343.393 kb on + strand, within ABZR87_RS06285at 1343.393 kb on + strand, within ABZR87_RS06285at 1343.393 kb on + strand, within ABZR87_RS06285at 1343.394 kb on - strand, within ABZR87_RS06285at 1343.394 kb on - strand, within ABZR87_RS06285at 1343.394 kb on - strand, within ABZR87_RS06285at 1343.394 kb on - strand, within ABZR87_RS06285at 1343.394 kb on - strand, within ABZR87_RS06285at 1343.403 kb on - strand, within ABZR87_RS06285at 1343.477 kb on + strand, within ABZR87_RS06285at 1343.641 kb on + strand, within ABZR87_RS06290at 1343.752 kb on + strand, within ABZR87_RS06290at 1343.752 kb on + strand, within ABZR87_RS06290at 1343.752 kb on + strand, within ABZR87_RS06290at 1343.752 kb on + strand, within ABZR87_RS06290at 1343.752 kb on + strand, within ABZR87_RS06290at 1343.753 kb on - strand, within ABZR87_RS06290at 1343.753 kb on - strand, within ABZR87_RS06290at 1343.753 kb on - strand, within ABZR87_RS06290at 1343.753 kb on - strand, within ABZR87_RS06290at 1343.753 kb on - strand, within ABZR87_RS06290at 1343.920 kb on + strand, within ABZR87_RS06290at 1344.269 kb on - strandat 1344.319 kb on + strandat 1344.319 kb on + strandat 1344.319 kb on + strandat 1344.320 kb on - strandat 1344.320 kb on - strandat 1344.346 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,342,204 + ABZR87_RS06280 0.46 -0.9
1,342,205 - ABZR87_RS06280 0.46 -0.2
1,342,222 + ABZR87_RS06280 0.47 -0.1
1,342,334 - ABZR87_RS06280 0.54 -0.7
1,342,334 - ABZR87_RS06280 0.54 -1.3
1,342,492 + ABZR87_RS06280 0.64 +0.1
1,342,492 + ABZR87_RS06280 0.64 -1.2
1,342,493 - ABZR87_RS06280 0.64 -0.5
1,342,493 - ABZR87_RS06280 0.64 +0.5
1,342,570 + ABZR87_RS06280 0.69 +0.9
1,342,570 + ABZR87_RS06280 0.69 -0.7
1,342,570 + ABZR87_RS06280 0.69 +1.2
1,342,571 - ABZR87_RS06280 0.69 -0.5
1,342,571 - ABZR87_RS06280 0.69 -0.2
1,342,571 - ABZR87_RS06280 0.69 +0.1
1,342,651 + ABZR87_RS06280 0.74 +0.1
1,342,651 + ABZR87_RS06280 0.74 -1.2
1,342,652 - ABZR87_RS06280 0.74 -0.4
1,342,652 - ABZR87_RS06280 0.74 -0.0
1,342,721 - ABZR87_RS06280 0.78 +1.1
1,342,723 + ABZR87_RS06280 0.78 +0.1
1,342,723 + ABZR87_RS06280 0.78 -0.3
1,342,723 + ABZR87_RS06280 0.78 -0.3
1,342,723 + ABZR87_RS06280 0.78 -1.3
1,342,723 + ABZR87_RS06280 0.78 +0.0
1,342,723 + ABZR87_RS06280 0.78 +2.5
1,342,723 + ABZR87_RS06280 0.78 -0.7
1,342,723 + ABZR87_RS06280 0.78 +3.0
1,342,724 - ABZR87_RS06280 0.78 +1.2
1,342,724 - ABZR87_RS06280 0.78 +0.7
1,342,724 - ABZR87_RS06280 0.78 -1.0
1,342,828 + ABZR87_RS06280 0.85 +2.0
1,342,828 + ABZR87_RS06280 0.85 +0.7
1,342,829 - ABZR87_RS06280 0.85 +2.5
1,342,829 - ABZR87_RS06280 0.85 +1.3
1,342,829 - ABZR87_RS06280 0.85 -1.1
1,343,062 - +0.5
1,343,062 - +2.5
1,343,127 - -1.0
1,343,372 + ABZR87_RS06285 0.61 -2.1
1,343,372 + ABZR87_RS06285 0.61 +0.3
1,343,373 - ABZR87_RS06285 0.62 -0.2
1,343,393 + ABZR87_RS06285 0.66 +1.4
1,343,393 + ABZR87_RS06285 0.66 -2.5
1,343,393 + ABZR87_RS06285 0.66 -0.3
1,343,393 + ABZR87_RS06285 0.66 +0.1
1,343,393 + ABZR87_RS06285 0.66 +0.2
1,343,394 - ABZR87_RS06285 0.66 -0.1
1,343,394 - ABZR87_RS06285 0.66 +1.5
1,343,394 - ABZR87_RS06285 0.66 +0.1
1,343,394 - ABZR87_RS06285 0.66 -0.8
1,343,394 - ABZR87_RS06285 0.66 -0.4
1,343,403 - ABZR87_RS06285 0.68 +0.1
1,343,477 + ABZR87_RS06285 0.85 -0.5
1,343,641 + ABZR87_RS06290 0.14 +0.5
1,343,752 + ABZR87_RS06290 0.30 +1.0
1,343,752 + ABZR87_RS06290 0.30 +0.6
1,343,752 + ABZR87_RS06290 0.30 +1.2
1,343,752 + ABZR87_RS06290 0.30 -2.2
1,343,752 + ABZR87_RS06290 0.30 -0.3
1,343,753 - ABZR87_RS06290 0.30 +0.2
1,343,753 - ABZR87_RS06290 0.30 +0.3
1,343,753 - ABZR87_RS06290 0.30 +0.9
1,343,753 - ABZR87_RS06290 0.30 +0.8
1,343,753 - ABZR87_RS06290 0.30 +0.9
1,343,920 + ABZR87_RS06290 0.54 +0.9
1,344,269 - -0.2
1,344,319 + -0.9
1,344,319 + +0.7
1,344,319 + +0.6
1,344,320 - +1.5
1,344,320 - +0.7
1,344,346 + -0.1

Or see this region's nucleotide sequence