Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06245

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06235 and ABZR87_RS06240 are separated by 12 nucleotidesABZR87_RS06240 and ABZR87_RS06245 are separated by 10 nucleotidesABZR87_RS06245 and ABZR87_RS06250 are separated by 22 nucleotidesABZR87_RS06250 and ABZR87_RS06255 are separated by 1 nucleotides ABZR87_RS06235: ABZR87_RS06235 - MBL fold metallo-hydrolase, at 1,332,104 to 1,333,057 _RS06235 ABZR87_RS06240: ABZR87_RS06240 - DUF1289 domain-containing protein, at 1,333,070 to 1,333,336 _RS06240 ABZR87_RS06245: ABZR87_RS06245 - YbaK/EbsC family protein, at 1,333,347 to 1,333,847 _RS06245 ABZR87_RS06250: ABZR87_RS06250 - hydroxymethylglutaryl-CoA lyase, at 1,333,870 to 1,334,799 _RS06250 ABZR87_RS06255: ABZR87_RS06255 - glyoxylate/hydroxypyruvate reductase A, at 1,334,801 to 1,335,742 _RS06255 Position (kb) 1333 1334Strain fitness (log2 ratio) -2 -1 0 1 2at 1332.357 kb on + strand, within ABZR87_RS06235at 1332.357 kb on + strand, within ABZR87_RS06235at 1332.358 kb on - strand, within ABZR87_RS06235at 1332.726 kb on + strand, within ABZR87_RS06235at 1332.726 kb on + strand, within ABZR87_RS06235at 1332.798 kb on + strand, within ABZR87_RS06235at 1332.798 kb on + strand, within ABZR87_RS06235at 1332.798 kb on + strand, within ABZR87_RS06235at 1332.798 kb on + strand, within ABZR87_RS06235at 1332.798 kb on + strand, within ABZR87_RS06235at 1332.798 kb on + strand, within ABZR87_RS06235at 1332.798 kb on + strand, within ABZR87_RS06235at 1332.799 kb on - strand, within ABZR87_RS06235at 1332.799 kb on - strand, within ABZR87_RS06235at 1332.799 kb on - strand, within ABZR87_RS06235at 1333.090 kb on + strandat 1333.459 kb on + strand, within ABZR87_RS06245at 1333.459 kb on + strand, within ABZR87_RS06245at 1333.459 kb on + strand, within ABZR87_RS06245at 1333.535 kb on - strand, within ABZR87_RS06245at 1333.833 kb on - strandat 1333.875 kb on + strandat 1333.876 kb on - strandat 1334.030 kb on + strand, within ABZR87_RS06250at 1334.030 kb on + strand, within ABZR87_RS06250at 1334.030 kb on + strand, within ABZR87_RS06250at 1334.031 kb on - strand, within ABZR87_RS06250at 1334.031 kb on - strand, within ABZR87_RS06250at 1334.076 kb on - strand, within ABZR87_RS06250at 1334.165 kb on + strand, within ABZR87_RS06250at 1334.165 kb on + strand, within ABZR87_RS06250at 1334.165 kb on + strand, within ABZR87_RS06250at 1334.351 kb on + strand, within ABZR87_RS06250at 1334.570 kb on + strand, within ABZR87_RS06250at 1334.570 kb on + strand, within ABZR87_RS06250at 1334.805 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,332,357 + ABZR87_RS06235 0.27 +0.4
1,332,357 + ABZR87_RS06235 0.27 +1.2
1,332,358 - ABZR87_RS06235 0.27 -1.5
1,332,726 + ABZR87_RS06235 0.65 -0.2
1,332,726 + ABZR87_RS06235 0.65 +1.7
1,332,798 + ABZR87_RS06235 0.73 +0.6
1,332,798 + ABZR87_RS06235 0.73 -0.2
1,332,798 + ABZR87_RS06235 0.73 -1.0
1,332,798 + ABZR87_RS06235 0.73 +1.7
1,332,798 + ABZR87_RS06235 0.73 -0.9
1,332,798 + ABZR87_RS06235 0.73 -1.5
1,332,798 + ABZR87_RS06235 0.73 +0.7
1,332,799 - ABZR87_RS06235 0.73 -1.0
1,332,799 - ABZR87_RS06235 0.73 +0.6
1,332,799 - ABZR87_RS06235 0.73 -0.8
1,333,090 + -1.4
1,333,459 + ABZR87_RS06245 0.22 +2.2
1,333,459 + ABZR87_RS06245 0.22 +1.5
1,333,459 + ABZR87_RS06245 0.22 +0.6
1,333,535 - ABZR87_RS06245 0.38 -0.3
1,333,833 - -1.4
1,333,875 + +2.5
1,333,876 - +2.2
1,334,030 + ABZR87_RS06250 0.17 -1.0
1,334,030 + ABZR87_RS06250 0.17 +2.5
1,334,030 + ABZR87_RS06250 0.17 +0.0
1,334,031 - ABZR87_RS06250 0.17 -0.5
1,334,031 - ABZR87_RS06250 0.17 +0.0
1,334,076 - ABZR87_RS06250 0.22 +0.4
1,334,165 + ABZR87_RS06250 0.32 +0.9
1,334,165 + ABZR87_RS06250 0.32 +1.2
1,334,165 + ABZR87_RS06250 0.32 -0.8
1,334,351 + ABZR87_RS06250 0.52 -1.7
1,334,570 + ABZR87_RS06250 0.75 -1.9
1,334,570 + ABZR87_RS06250 0.75 -0.7
1,334,805 + -1.0

Or see this region's nucleotide sequence