Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS05330 and ABZR87_RS05335 are separated by 338 nucleotides ABZR87_RS05335 and ABZR87_RS05340 are separated by 15 nucleotides ABZR87_RS05340 and ABZR87_RS05345 are separated by 4 nucleotides ABZR87_RS05345 and ABZR87_RS05350 are separated by 7 nucleotides
ABZR87_RS05330: ABZR87_RS05330 - 30S ribosomal protein S21, at 1,124,885 to 1,125,097
_RS05330
ABZR87_RS05335: ABZR87_RS05335 - hypothetical protein, at 1,125,436 to 1,125,690
_RS05335
ABZR87_RS05340: ABZR87_RS05340 - low molecular weight protein tyrosine phosphatase family protein, at 1,125,706 to 1,126,029
_RS05340
ABZR87_RS05345: ABZR87_RS05345 - NUDIX hydrolase, at 1,126,034 to 1,126,423
_RS05345
ABZR87_RS05350: ABZR87_RS05350 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 1,126,431 to 1,127,876
_RS05350
Position (kb) 1125
1126
1127 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 1124.719 kb on + strand at 1124.719 kb on + strand at 1124.719 kb on + strand at 1124.719 kb on + strand at 1124.720 kb on - strand at 1124.721 kb on + strand at 1124.722 kb on + strand at 1124.722 kb on + strand at 1124.722 kb on + strand at 1124.723 kb on - strand at 1124.723 kb on - strand at 1124.723 kb on - strand at 1124.785 kb on + strand at 1124.785 kb on + strand at 1124.785 kb on + strand at 1124.785 kb on + strand at 1124.785 kb on + strand at 1124.786 kb on - strand at 1124.786 kb on - strand at 1124.786 kb on - strand at 1124.786 kb on - strand at 1124.786 kb on - strand at 1125.092 kb on + strand at 1125.092 kb on + strand at 1125.092 kb on + strand at 1125.092 kb on + strand at 1125.092 kb on + strand at 1125.093 kb on - strand at 1125.093 kb on - strand at 1125.093 kb on - strand at 1125.093 kb on - strand at 1125.095 kb on + strand at 1125.095 kb on + strand at 1125.095 kb on + strand at 1125.096 kb on - strand at 1125.096 kb on - strand at 1125.244 kb on - strand at 1125.244 kb on - strand at 1125.244 kb on - strand at 1125.252 kb on + strand at 1125.252 kb on + strand at 1125.252 kb on + strand at 1125.252 kb on + strand at 1125.253 kb on - strand at 1125.253 kb on - strand at 1125.346 kb on - strand at 1125.395 kb on + strand at 1125.395 kb on + strand at 1125.395 kb on + strand at 1125.395 kb on + strand at 1125.401 kb on - strand at 1125.441 kb on + strand at 1125.441 kb on + strand at 1125.441 kb on + strand at 1125.441 kb on + strand at 1125.442 kb on - strand at 1125.442 kb on - strand at 1125.442 kb on - strand at 1125.442 kb on - strand at 1125.442 kb on - strand at 1125.444 kb on + strand at 1125.444 kb on + strand at 1125.444 kb on + strand at 1125.445 kb on - strand at 1125.445 kb on - strand at 1125.445 kb on - strand at 1125.445 kb on - strand at 1125.445 kb on - strand at 1125.460 kb on + strand at 1125.460 kb on + strand at 1125.461 kb on - strand at 1125.461 kb on - strand at 1125.461 kb on - strand at 1125.461 kb on - strand at 1125.482 kb on - strand, within ABZR87_RS05335 at 1125.538 kb on + strand, within ABZR87_RS05335 at 1125.538 kb on + strand, within ABZR87_RS05335 at 1125.538 kb on + strand, within ABZR87_RS05335 at 1125.538 kb on + strand, within ABZR87_RS05335 at 1125.538 kb on + strand, within ABZR87_RS05335 at 1125.538 kb on + strand, within ABZR87_RS05335 at 1125.538 kb on + strand, within ABZR87_RS05335 at 1125.538 kb on + strand, within ABZR87_RS05335 at 1125.538 kb on + strand, within ABZR87_RS05335 at 1125.538 kb on + strand, within ABZR87_RS05335 at 1125.539 kb on - strand, within ABZR87_RS05335 at 1125.539 kb on - strand, within ABZR87_RS05335 at 1125.539 kb on - strand, within ABZR87_RS05335 at 1125.539 kb on - strand, within ABZR87_RS05335 at 1125.539 kb on - strand, within ABZR87_RS05335 at 1125.539 kb on - strand, within ABZR87_RS05335 at 1125.539 kb on - strand, within ABZR87_RS05335 at 1125.539 kb on - strand, within ABZR87_RS05335 at 1125.539 kb on - strand, within ABZR87_RS05335 at 1125.539 kb on - strand, within ABZR87_RS05335 at 1125.539 kb on - strand, within ABZR87_RS05335 at 1125.545 kb on + strand, within ABZR87_RS05335 at 1125.607 kb on + strand, within ABZR87_RS05335 at 1125.607 kb on + strand, within ABZR87_RS05335 at 1125.607 kb on + strand, within ABZR87_RS05335 at 1125.607 kb on + strand, within ABZR87_RS05335 at 1125.608 kb on - strand, within ABZR87_RS05335 at 1125.707 kb on + strand at 1125.708 kb on - strand at 1125.708 kb on - strand at 1125.773 kb on + strand, within ABZR87_RS05340 at 1125.773 kb on + strand, within ABZR87_RS05340 at 1125.773 kb on + strand, within ABZR87_RS05340 at 1125.773 kb on + strand, within ABZR87_RS05340 at 1125.773 kb on + strand, within ABZR87_RS05340 at 1125.773 kb on + strand, within ABZR87_RS05340 at 1125.773 kb on + strand, within ABZR87_RS05340 at 1125.773 kb on + strand, within ABZR87_RS05340 at 1125.774 kb on - strand, within ABZR87_RS05340 at 1125.774 kb on - strand, within ABZR87_RS05340 at 1125.774 kb on - strand, within ABZR87_RS05340 at 1125.777 kb on + strand, within ABZR87_RS05340 at 1125.777 kb on + strand, within ABZR87_RS05340 at 1125.778 kb on - strand, within ABZR87_RS05340 at 1125.787 kb on - strand, within ABZR87_RS05340 at 1125.787 kb on - strand, within ABZR87_RS05340 at 1125.814 kb on + strand, within ABZR87_RS05340 at 1125.910 kb on + strand, within ABZR87_RS05340 at 1125.910 kb on + strand, within ABZR87_RS05340 at 1125.910 kb on + strand, within ABZR87_RS05340 at 1125.910 kb on + strand, within ABZR87_RS05340 at 1125.910 kb on + strand, within ABZR87_RS05340 at 1125.910 kb on + strand, within ABZR87_RS05340 at 1125.910 kb on + strand, within ABZR87_RS05340 at 1125.911 kb on - strand, within ABZR87_RS05340 at 1125.911 kb on - strand, within ABZR87_RS05340 at 1125.911 kb on - strand, within ABZR87_RS05340 at 1125.911 kb on - strand, within ABZR87_RS05340 at 1125.911 kb on - strand, within ABZR87_RS05340 at 1125.990 kb on + strand, within ABZR87_RS05340 at 1125.991 kb on - strand, within ABZR87_RS05340 at 1125.991 kb on - strand, within ABZR87_RS05340 at 1125.994 kb on + strand, within ABZR87_RS05340 at 1125.994 kb on + strand, within ABZR87_RS05340 at 1126.035 kb on + strand at 1126.035 kb on + strand at 1126.035 kb on + strand at 1126.035 kb on + strand at 1126.036 kb on - strand at 1126.179 kb on + strand, within ABZR87_RS05345 at 1126.179 kb on + strand, within ABZR87_RS05345 at 1126.179 kb on + strand, within ABZR87_RS05345 at 1126.179 kb on + strand, within ABZR87_RS05345 at 1126.179 kb on + strand, within ABZR87_RS05345 at 1126.179 kb on + strand, within ABZR87_RS05345 at 1126.179 kb on + strand, within ABZR87_RS05345 at 1126.179 kb on + strand, within ABZR87_RS05345 at 1126.179 kb on + strand, within ABZR87_RS05345 at 1126.179 kb on + strand, within ABZR87_RS05345 at 1126.179 kb on + strand, within ABZR87_RS05345 at 1126.179 kb on + strand, within ABZR87_RS05345 at 1126.179 kb on + strand, within ABZR87_RS05345 at 1126.179 kb on + strand, within ABZR87_RS05345 at 1126.180 kb on - strand, within ABZR87_RS05345 at 1126.180 kb on - strand, within ABZR87_RS05345 at 1126.180 kb on - strand, within ABZR87_RS05345 at 1126.180 kb on - strand, within ABZR87_RS05345 at 1126.180 kb on - strand, within ABZR87_RS05345 at 1126.180 kb on - strand, within ABZR87_RS05345 at 1126.180 kb on - strand, within ABZR87_RS05345 at 1126.180 kb on - strand, within ABZR87_RS05345 at 1126.180 kb on - strand, within ABZR87_RS05345 at 1126.180 kb on - strand, within ABZR87_RS05345 at 1126.180 kb on - strand, within ABZR87_RS05345 at 1126.189 kb on + strand, within ABZR87_RS05345 at 1126.190 kb on - strand, within ABZR87_RS05345 at 1126.190 kb on - strand, within ABZR87_RS05345 at 1126.190 kb on - strand, within ABZR87_RS05345 at 1126.190 kb on - strand, within ABZR87_RS05345 at 1126.190 kb on - strand, within ABZR87_RS05345 at 1126.224 kb on + strand, within ABZR87_RS05345 at 1126.224 kb on + strand, within ABZR87_RS05345 at 1126.224 kb on + strand, within ABZR87_RS05345 at 1126.224 kb on + strand, within ABZR87_RS05345 at 1126.224 kb on + strand, within ABZR87_RS05345 at 1126.224 kb on + strand, within ABZR87_RS05345 at 1126.224 kb on + strand, within ABZR87_RS05345 at 1126.224 kb on + strand, within ABZR87_RS05345 at 1126.225 kb on - strand, within ABZR87_RS05345 at 1126.225 kb on - strand, within ABZR87_RS05345 at 1126.225 kb on - strand, within ABZR87_RS05345 at 1126.225 kb on - strand, within ABZR87_RS05345 at 1126.225 kb on - strand, within ABZR87_RS05345 at 1126.225 kb on - strand, within ABZR87_RS05345 at 1126.225 kb on - strand, within ABZR87_RS05345 at 1126.225 kb on - strand, within ABZR87_RS05345 at 1126.225 kb on - strand, within ABZR87_RS05345 at 1126.225 kb on - strand, within ABZR87_RS05345 at 1126.225 kb on - strand, within ABZR87_RS05345 at 1126.225 kb on - strand, within ABZR87_RS05345 at 1126.225 kb on - strand, within ABZR87_RS05345 at 1126.358 kb on + strand, within ABZR87_RS05345 at 1126.358 kb on + strand, within ABZR87_RS05345 at 1126.413 kb on + strand at 1126.442 kb on + strand at 1126.443 kb on - strand at 1126.496 kb on + strand at 1126.643 kb on - strand, within ABZR87_RS05350 at 1127.022 kb on - strand, within ABZR87_RS05350
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 1,124,719 + -0.8 1,124,719 + +1.2 1,124,719 + +0.4 1,124,719 + +1.3 1,124,720 - -0.7 1,124,721 + +0.4 1,124,722 + -0.2 1,124,722 + -0.8 1,124,722 + -1.6 1,124,723 - +0.1 1,124,723 - +2.0 1,124,723 - +1.0 1,124,785 + +0.5 1,124,785 + -0.7 1,124,785 + -0.7 1,124,785 + -2.0 1,124,785 + +0.3 1,124,786 - +0.3 1,124,786 - -0.5 1,124,786 - +2.0 1,124,786 - +1.2 1,124,786 - +0.8 1,125,092 + +0.8 1,125,092 + -1.3 1,125,092 + +0.3 1,125,092 + -0.8 1,125,092 + +0.8 1,125,093 - -0.5 1,125,093 - +0.5 1,125,093 - -1.0 1,125,093 - +1.0 1,125,095 + +0.8 1,125,095 + -1.2 1,125,095 + +0.7 1,125,096 - +0.5 1,125,096 - -0.5 1,125,244 - +0.1 1,125,244 - +1.4 1,125,244 - +0.7 1,125,252 + -0.4 1,125,252 + -0.1 1,125,252 + -1.9 1,125,252 + -1.8 1,125,253 - -0.2 1,125,253 - +1.3 1,125,346 - +5.6 1,125,395 + -0.4 1,125,395 + -0.1 1,125,395 + -1.0 1,125,395 + -0.4 1,125,401 - -0.8 1,125,441 + +0.5 1,125,441 + -0.5 1,125,441 + +1.4 1,125,441 + -1.0 1,125,442 - +0.4 1,125,442 - +0.1 1,125,442 - +0.3 1,125,442 - -0.6 1,125,442 - -0.5 1,125,444 + +1.0 1,125,444 + +1.6 1,125,444 + -0.8 1,125,445 - -0.2 1,125,445 - +0.3 1,125,445 - -0.0 1,125,445 - +2.1 1,125,445 - +0.7 1,125,460 + +0.3 1,125,460 + -1.8 1,125,461 - -0.3 1,125,461 - -1.9 1,125,461 - -0.0 1,125,461 - +1.1 1,125,482 - ABZR87_RS05335 0.18 -0.3 1,125,538 + ABZR87_RS05335 0.40 +1.1 1,125,538 + ABZR87_RS05335 0.40 -0.6 1,125,538 + ABZR87_RS05335 0.40 -0.9 1,125,538 + ABZR87_RS05335 0.40 -0.1 1,125,538 + ABZR87_RS05335 0.40 +1.4 1,125,538 + ABZR87_RS05335 0.40 -1.2 1,125,538 + ABZR87_RS05335 0.40 -0.6 1,125,538 + ABZR87_RS05335 0.40 -2.4 1,125,538 + ABZR87_RS05335 0.40 -2.2 1,125,538 + ABZR87_RS05335 0.40 -1.6 1,125,539 - ABZR87_RS05335 0.40 -1.2 1,125,539 - ABZR87_RS05335 0.40 -0.2 1,125,539 - ABZR87_RS05335 0.40 -0.5 1,125,539 - ABZR87_RS05335 0.40 -1.3 1,125,539 - ABZR87_RS05335 0.40 -0.1 1,125,539 - ABZR87_RS05335 0.40 +0.4 1,125,539 - ABZR87_RS05335 0.40 +0.6 1,125,539 - ABZR87_RS05335 0.40 +0.8 1,125,539 - ABZR87_RS05335 0.40 -0.0 1,125,539 - ABZR87_RS05335 0.40 -0.3 1,125,539 - ABZR87_RS05335 0.40 +0.1 1,125,545 + ABZR87_RS05335 0.43 -1.7 1,125,607 + ABZR87_RS05335 0.67 -1.2 1,125,607 + ABZR87_RS05335 0.67 -0.9 1,125,607 + ABZR87_RS05335 0.67 +0.7 1,125,607 + ABZR87_RS05335 0.67 -1.8 1,125,608 - ABZR87_RS05335 0.67 -2.4 1,125,707 + -0.8 1,125,708 - -0.1 1,125,708 - -1.7 1,125,773 + ABZR87_RS05340 0.21 -0.6 1,125,773 + ABZR87_RS05340 0.21 -0.4 1,125,773 + ABZR87_RS05340 0.21 +0.7 1,125,773 + ABZR87_RS05340 0.21 -1.1 1,125,773 + ABZR87_RS05340 0.21 +0.0 1,125,773 + ABZR87_RS05340 0.21 -1.6 1,125,773 + ABZR87_RS05340 0.21 -0.8 1,125,773 + ABZR87_RS05340 0.21 +1.9 1,125,774 - ABZR87_RS05340 0.21 -0.4 1,125,774 - ABZR87_RS05340 0.21 +1.2 1,125,774 - ABZR87_RS05340 0.21 -1.8 1,125,777 + ABZR87_RS05340 0.22 -1.0 1,125,777 + ABZR87_RS05340 0.22 +2.0 1,125,778 - ABZR87_RS05340 0.22 +1.0 1,125,787 - ABZR87_RS05340 0.25 -0.6 1,125,787 - ABZR87_RS05340 0.25 -0.3 1,125,814 + ABZR87_RS05340 0.33 +1.7 1,125,910 + ABZR87_RS05340 0.63 -0.9 1,125,910 + ABZR87_RS05340 0.63 +0.1 1,125,910 + ABZR87_RS05340 0.63 -1.1 1,125,910 + ABZR87_RS05340 0.63 +1.1 1,125,910 + ABZR87_RS05340 0.63 -0.5 1,125,910 + ABZR87_RS05340 0.63 -1.4 1,125,910 + ABZR87_RS05340 0.63 +0.8 1,125,911 - ABZR87_RS05340 0.63 +1.3 1,125,911 - ABZR87_RS05340 0.63 +1.0 1,125,911 - ABZR87_RS05340 0.63 -0.6 1,125,911 - ABZR87_RS05340 0.63 -0.9 1,125,911 - ABZR87_RS05340 0.63 -1.0 1,125,990 + ABZR87_RS05340 0.88 +0.0 1,125,991 - ABZR87_RS05340 0.88 -0.0 1,125,991 - ABZR87_RS05340 0.88 -1.0 1,125,994 + ABZR87_RS05340 0.89 -0.2 1,125,994 + ABZR87_RS05340 0.89 -0.6 1,126,035 + -0.3 1,126,035 + +0.5 1,126,035 + -1.0 1,126,035 + +0.8 1,126,036 - -1.1 1,126,179 + ABZR87_RS05345 0.37 +2.4 1,126,179 + ABZR87_RS05345 0.37 +0.7 1,126,179 + ABZR87_RS05345 0.37 +0.2 1,126,179 + ABZR87_RS05345 0.37 -0.6 1,126,179 + ABZR87_RS05345 0.37 +0.1 1,126,179 + ABZR87_RS05345 0.37 -1.3 1,126,179 + ABZR87_RS05345 0.37 -2.3 1,126,179 + ABZR87_RS05345 0.37 +1.1 1,126,179 + ABZR87_RS05345 0.37 -0.4 1,126,179 + ABZR87_RS05345 0.37 -1.9 1,126,179 + ABZR87_RS05345 0.37 +0.3 1,126,179 + ABZR87_RS05345 0.37 -1.7 1,126,179 + ABZR87_RS05345 0.37 -1.3 1,126,179 + ABZR87_RS05345 0.37 -1.2 1,126,180 - ABZR87_RS05345 0.37 +0.8 1,126,180 - ABZR87_RS05345 0.37 +0.9 1,126,180 - ABZR87_RS05345 0.37 +1.5 1,126,180 - ABZR87_RS05345 0.37 -0.5 1,126,180 - ABZR87_RS05345 0.37 -1.0 1,126,180 - ABZR87_RS05345 0.37 +2.0 1,126,180 - ABZR87_RS05345 0.37 -0.7 1,126,180 - ABZR87_RS05345 0.37 +1.2 1,126,180 - ABZR87_RS05345 0.37 +1.0 1,126,180 - ABZR87_RS05345 0.37 -0.1 1,126,180 - ABZR87_RS05345 0.37 -0.8 1,126,189 + ABZR87_RS05345 0.40 -1.1 1,126,190 - ABZR87_RS05345 0.40 -0.8 1,126,190 - ABZR87_RS05345 0.40 +1.1 1,126,190 - ABZR87_RS05345 0.40 -1.1 1,126,190 - ABZR87_RS05345 0.40 -0.8 1,126,190 - ABZR87_RS05345 0.40 -0.1 1,126,224 + ABZR87_RS05345 0.49 +0.5 1,126,224 + ABZR87_RS05345 0.49 +1.3 1,126,224 + ABZR87_RS05345 0.49 +2.0 1,126,224 + ABZR87_RS05345 0.49 -0.4 1,126,224 + ABZR87_RS05345 0.49 +2.2 1,126,224 + ABZR87_RS05345 0.49 +1.0 1,126,224 + ABZR87_RS05345 0.49 -0.5 1,126,224 + ABZR87_RS05345 0.49 +0.8 1,126,225 - ABZR87_RS05345 0.49 +0.8 1,126,225 - ABZR87_RS05345 0.49 -0.8 1,126,225 - ABZR87_RS05345 0.49 +0.9 1,126,225 - ABZR87_RS05345 0.49 +0.4 1,126,225 - ABZR87_RS05345 0.49 -0.5 1,126,225 - ABZR87_RS05345 0.49 -1.0 1,126,225 - ABZR87_RS05345 0.49 -1.6 1,126,225 - ABZR87_RS05345 0.49 -1.3 1,126,225 - ABZR87_RS05345 0.49 -1.0 1,126,225 - ABZR87_RS05345 0.49 +0.2 1,126,225 - ABZR87_RS05345 0.49 +1.2 1,126,225 - ABZR87_RS05345 0.49 -0.7 1,126,225 - ABZR87_RS05345 0.49 +0.4 1,126,358 + ABZR87_RS05345 0.83 -0.1 1,126,358 + ABZR87_RS05345 0.83 -1.3 1,126,413 + +1.0 1,126,442 + +4.0 1,126,443 - +1.7 1,126,496 + +0.7 1,126,643 - ABZR87_RS05350 0.15 +1.2 1,127,022 - ABZR87_RS05350 0.41 -0.1
Or see this region's nucleotide sequence