Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05245

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05235 and ABZR87_RS05240 are separated by 131 nucleotidesABZR87_RS05240 and ABZR87_RS05245 are separated by 15 nucleotidesABZR87_RS05245 and ABZR87_RS05250 overlap by 4 nucleotides ABZR87_RS05235: ABZR87_RS05235 - D-erythronate dehydrogenase, at 1,100,252 to 1,101,235 _RS05235 ABZR87_RS05240: ABZR87_RS05240 - FadR/GntR family transcriptional regulator, at 1,101,367 to 1,102,083 _RS05240 ABZR87_RS05245: ABZR87_RS05245 - L-threonate dehydrogenase, at 1,102,099 to 1,103,010 _RS05245 ABZR87_RS05250: ABZR87_RS05250 - 3-oxo-tetronate kinase, at 1,103,007 to 1,104,320 _RS05250 Position (kb) 1102 1103 1104Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1101.286 kb on + strandat 1101.286 kb on + strandat 1101.287 kb on - strandat 1101.291 kb on + strandat 1101.302 kb on - strandat 1101.323 kb on + strandat 1101.324 kb on - strandat 1101.583 kb on + strand, within ABZR87_RS05240at 1101.583 kb on + strand, within ABZR87_RS05240at 1101.583 kb on + strand, within ABZR87_RS05240at 1101.584 kb on - strand, within ABZR87_RS05240at 1101.584 kb on - strand, within ABZR87_RS05240at 1101.584 kb on - strand, within ABZR87_RS05240at 1101.883 kb on + strand, within ABZR87_RS05240at 1101.884 kb on - strand, within ABZR87_RS05240at 1101.884 kb on - strand, within ABZR87_RS05240at 1102.189 kb on + strandat 1102.190 kb on - strandat 1102.190 kb on - strandat 1102.462 kb on + strand, within ABZR87_RS05245at 1102.462 kb on + strand, within ABZR87_RS05245at 1102.462 kb on + strand, within ABZR87_RS05245at 1102.462 kb on + strand, within ABZR87_RS05245at 1102.463 kb on - strand, within ABZR87_RS05245at 1102.463 kb on - strand, within ABZR87_RS05245at 1102.463 kb on - strand, within ABZR87_RS05245at 1102.463 kb on - strand, within ABZR87_RS05245at 1102.463 kb on - strand, within ABZR87_RS05245at 1102.463 kb on - strand, within ABZR87_RS05245at 1102.463 kb on - strand, within ABZR87_RS05245at 1102.463 kb on - strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.546 kb on + strand, within ABZR87_RS05245at 1102.547 kb on - strand, within ABZR87_RS05245at 1102.547 kb on - strand, within ABZR87_RS05245at 1102.547 kb on - strand, within ABZR87_RS05245at 1102.547 kb on - strand, within ABZR87_RS05245at 1102.709 kb on + strand, within ABZR87_RS05245at 1102.709 kb on + strand, within ABZR87_RS05245at 1102.709 kb on + strand, within ABZR87_RS05245at 1102.709 kb on + strand, within ABZR87_RS05245at 1102.726 kb on + strand, within ABZR87_RS05245at 1102.727 kb on - strand, within ABZR87_RS05245at 1102.727 kb on - strand, within ABZR87_RS05245at 1102.727 kb on - strand, within ABZR87_RS05245at 1102.727 kb on - strand, within ABZR87_RS05245at 1102.727 kb on - strand, within ABZR87_RS05245at 1102.727 kb on - strand, within ABZR87_RS05245at 1102.744 kb on - strand, within ABZR87_RS05245at 1102.801 kb on + strand, within ABZR87_RS05245at 1102.802 kb on - strand, within ABZR87_RS05245at 1102.802 kb on - strand, within ABZR87_RS05245at 1102.802 kb on - strand, within ABZR87_RS05245at 1102.896 kb on + strand, within ABZR87_RS05245at 1102.937 kb on - strandat 1102.966 kb on + strandat 1103.113 kb on + strandat 1103.113 kb on + strandat 1103.113 kb on + strandat 1103.114 kb on - strandat 1103.114 kb on - strandat 1103.284 kb on - strand, within ABZR87_RS05250at 1103.298 kb on + strand, within ABZR87_RS05250at 1103.357 kb on + strand, within ABZR87_RS05250at 1103.358 kb on - strand, within ABZR87_RS05250at 1103.547 kb on + strand, within ABZR87_RS05250at 1103.548 kb on - strand, within ABZR87_RS05250at 1103.733 kb on + strand, within ABZR87_RS05250

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,101,286 + -0.9
1,101,286 + +1.8
1,101,287 - +2.5
1,101,291 + +0.6
1,101,302 - -1.6
1,101,323 + +0.1
1,101,324 - -1.1
1,101,583 + ABZR87_RS05240 0.30 -0.0
1,101,583 + ABZR87_RS05240 0.30 +0.5
1,101,583 + ABZR87_RS05240 0.30 -0.7
1,101,584 - ABZR87_RS05240 0.30 -1.0
1,101,584 - ABZR87_RS05240 0.30 -1.4
1,101,584 - ABZR87_RS05240 0.30 +1.0
1,101,883 + ABZR87_RS05240 0.72 +2.6
1,101,884 - ABZR87_RS05240 0.72 +0.1
1,101,884 - ABZR87_RS05240 0.72 +0.4
1,102,189 + +0.7
1,102,190 - -3.0
1,102,190 - -0.5
1,102,462 + ABZR87_RS05245 0.40 +0.9
1,102,462 + ABZR87_RS05245 0.40 +0.8
1,102,462 + ABZR87_RS05245 0.40 -2.9
1,102,462 + ABZR87_RS05245 0.40 +1.7
1,102,463 - ABZR87_RS05245 0.40 -0.6
1,102,463 - ABZR87_RS05245 0.40 +0.5
1,102,463 - ABZR87_RS05245 0.40 -0.4
1,102,463 - ABZR87_RS05245 0.40 -1.4
1,102,463 - ABZR87_RS05245 0.40 +0.5
1,102,463 - ABZR87_RS05245 0.40 -0.7
1,102,463 - ABZR87_RS05245 0.40 -0.5
1,102,463 - ABZR87_RS05245 0.40 +0.1
1,102,546 + ABZR87_RS05245 0.49 -1.1
1,102,546 + ABZR87_RS05245 0.49 -0.1
1,102,546 + ABZR87_RS05245 0.49 +0.1
1,102,546 + ABZR87_RS05245 0.49 -0.1
1,102,546 + ABZR87_RS05245 0.49 -0.4
1,102,546 + ABZR87_RS05245 0.49 +0.1
1,102,546 + ABZR87_RS05245 0.49 +0.2
1,102,546 + ABZR87_RS05245 0.49 +0.4
1,102,546 + ABZR87_RS05245 0.49 -0.4
1,102,546 + ABZR87_RS05245 0.49 -1.5
1,102,547 - ABZR87_RS05245 0.49 -0.7
1,102,547 - ABZR87_RS05245 0.49 +0.2
1,102,547 - ABZR87_RS05245 0.49 -1.1
1,102,547 - ABZR87_RS05245 0.49 +2.4
1,102,709 + ABZR87_RS05245 0.67 +0.5
1,102,709 + ABZR87_RS05245 0.67 +0.1
1,102,709 + ABZR87_RS05245 0.67 -2.1
1,102,709 + ABZR87_RS05245 0.67 -0.7
1,102,726 + ABZR87_RS05245 0.69 -0.6
1,102,727 - ABZR87_RS05245 0.69 +0.0
1,102,727 - ABZR87_RS05245 0.69 -1.3
1,102,727 - ABZR87_RS05245 0.69 -1.2
1,102,727 - ABZR87_RS05245 0.69 -0.1
1,102,727 - ABZR87_RS05245 0.69 -0.5
1,102,727 - ABZR87_RS05245 0.69 -1.7
1,102,744 - ABZR87_RS05245 0.71 -0.0
1,102,801 + ABZR87_RS05245 0.77 +0.7
1,102,802 - ABZR87_RS05245 0.77 -0.7
1,102,802 - ABZR87_RS05245 0.77 -0.5
1,102,802 - ABZR87_RS05245 0.77 +0.5
1,102,896 + ABZR87_RS05245 0.87 +0.5
1,102,937 - +1.4
1,102,966 + +0.4
1,103,113 + +0.9
1,103,113 + +3.0
1,103,113 + +1.2
1,103,114 - +2.3
1,103,114 - -2.5
1,103,284 - ABZR87_RS05250 0.21 +2.2
1,103,298 + ABZR87_RS05250 0.22 -0.2
1,103,357 + ABZR87_RS05250 0.27 -0.5
1,103,358 - ABZR87_RS05250 0.27 -1.4
1,103,547 + ABZR87_RS05250 0.41 +0.4
1,103,548 - ABZR87_RS05250 0.41 -1.3
1,103,733 + ABZR87_RS05250 0.55 -0.0

Or see this region's nucleotide sequence