Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04760 and ABZR87_RS04765 are separated by 291 nucleotides ABZR87_RS04765 and ABZR87_RS04770 are separated by 277 nucleotides
ABZR87_RS04760: ABZR87_RS04760 - GMC family oxidoreductase N-terminal domain-containing protein, at 991,075 to 992,805
_RS04760
ABZR87_RS04765: ABZR87_RS04765 - amino acid ABC transporter substrate-binding protein, at 993,097 to 994,005
_RS04765
ABZR87_RS04770: ABZR87_RS04770 - acyl-CoA dehydrogenase family protein, at 994,283 to 995,944
_RS04770
Position (kb) 993
994
995 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 992.254 kb on + strand, within ABZR87_RS04760 at 992.254 kb on + strand, within ABZR87_RS04760 at 992.254 kb on + strand, within ABZR87_RS04760 at 992.254 kb on + strand, within ABZR87_RS04760 at 992.254 kb on + strand, within ABZR87_RS04760 at 992.254 kb on + strand, within ABZR87_RS04760 at 992.255 kb on - strand, within ABZR87_RS04760 at 992.255 kb on - strand, within ABZR87_RS04760 at 992.255 kb on - strand, within ABZR87_RS04760 at 992.255 kb on - strand, within ABZR87_RS04760 at 992.266 kb on + strand, within ABZR87_RS04760 at 992.467 kb on + strand, within ABZR87_RS04760 at 992.467 kb on + strand, within ABZR87_RS04760 at 992.468 kb on - strand, within ABZR87_RS04760 at 992.468 kb on - strand, within ABZR87_RS04760 at 992.545 kb on + strand, within ABZR87_RS04760 at 992.545 kb on + strand, within ABZR87_RS04760 at 992.545 kb on + strand, within ABZR87_RS04760 at 992.545 kb on + strand, within ABZR87_RS04760 at 992.545 kb on + strand, within ABZR87_RS04760 at 992.545 kb on + strand, within ABZR87_RS04760 at 992.545 kb on + strand, within ABZR87_RS04760 at 992.545 kb on + strand, within ABZR87_RS04760 at 992.545 kb on + strand, within ABZR87_RS04760 at 992.545 kb on + strand, within ABZR87_RS04760 at 992.545 kb on + strand, within ABZR87_RS04760 at 992.545 kb on + strand, within ABZR87_RS04760 at 992.545 kb on + strand, within ABZR87_RS04760 at 992.546 kb on - strand, within ABZR87_RS04760 at 992.546 kb on - strand, within ABZR87_RS04760 at 992.546 kb on - strand, within ABZR87_RS04760 at 992.546 kb on - strand, within ABZR87_RS04760 at 992.546 kb on - strand, within ABZR87_RS04760 at 992.726 kb on + strand at 992.726 kb on + strand at 992.726 kb on + strand at 992.726 kb on + strand at 992.726 kb on + strand at 992.726 kb on + strand at 992.727 kb on - strand at 992.803 kb on + strand at 992.871 kb on - strand at 992.871 kb on - strand at 992.871 kb on - strand at 993.111 kb on + strand at 993.111 kb on + strand at 993.111 kb on + strand at 993.123 kb on + strand at 993.123 kb on + strand at 993.123 kb on + strand at 993.123 kb on + strand at 993.123 kb on + strand at 993.124 kb on - strand at 993.124 kb on - strand at 993.126 kb on + strand at 993.127 kb on - strand at 993.147 kb on - strand at 993.209 kb on + strand, within ABZR87_RS04765 at 993.210 kb on - strand, within ABZR87_RS04765 at 993.341 kb on + strand, within ABZR87_RS04765 at 993.341 kb on + strand, within ABZR87_RS04765 at 993.342 kb on - strand, within ABZR87_RS04765 at 993.342 kb on - strand, within ABZR87_RS04765 at 993.611 kb on + strand, within ABZR87_RS04765 at 993.611 kb on + strand, within ABZR87_RS04765 at 993.611 kb on + strand, within ABZR87_RS04765 at 993.611 kb on + strand, within ABZR87_RS04765 at 993.611 kb on + strand, within ABZR87_RS04765 at 993.612 kb on - strand, within ABZR87_RS04765 at 993.612 kb on - strand, within ABZR87_RS04765 at 993.612 kb on - strand, within ABZR87_RS04765 at 993.734 kb on + strand, within ABZR87_RS04765 at 993.734 kb on + strand, within ABZR87_RS04765 at 993.734 kb on + strand, within ABZR87_RS04765 at 993.734 kb on + strand, within ABZR87_RS04765 at 993.734 kb on + strand, within ABZR87_RS04765 at 993.734 kb on + strand, within ABZR87_RS04765 at 993.734 kb on + strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.735 kb on - strand, within ABZR87_RS04765 at 993.836 kb on + strand, within ABZR87_RS04765 at 993.837 kb on - strand, within ABZR87_RS04765 at 993.837 kb on - strand, within ABZR87_RS04765 at 993.837 kb on - strand, within ABZR87_RS04765 at 994.030 kb on - strand at 994.037 kb on + strand at 994.037 kb on + strand at 994.038 kb on - strand at 994.038 kb on - strand at 994.038 kb on - strand at 994.155 kb on - strand at 994.155 kb on - strand at 994.155 kb on - strand at 994.155 kb on - strand at 994.171 kb on + strand at 994.171 kb on + strand at 994.173 kb on + strand at 994.174 kb on - strand at 994.203 kb on - strand at 994.284 kb on + strand at 994.284 kb on + strand at 994.284 kb on + strand at 994.284 kb on + strand at 994.285 kb on - strand at 994.285 kb on - strand at 994.659 kb on + strand, within ABZR87_RS04770 at 994.710 kb on + strand, within ABZR87_RS04770 at 994.710 kb on + strand, within ABZR87_RS04770 at 994.710 kb on + strand, within ABZR87_RS04770 at 994.711 kb on - strand, within ABZR87_RS04770
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 992,254 + ABZR87_RS04760 0.68 -2.4 992,254 + ABZR87_RS04760 0.68 +1.5 992,254 + ABZR87_RS04760 0.68 -0.7 992,254 + ABZR87_RS04760 0.68 +0.0 992,254 + ABZR87_RS04760 0.68 +2.7 992,254 + ABZR87_RS04760 0.68 -0.0 992,255 - ABZR87_RS04760 0.68 -2.2 992,255 - ABZR87_RS04760 0.68 +0.6 992,255 - ABZR87_RS04760 0.68 +1.1 992,255 - ABZR87_RS04760 0.68 +0.1 992,266 + ABZR87_RS04760 0.69 -1.4 992,467 + ABZR87_RS04760 0.80 -0.9 992,467 + ABZR87_RS04760 0.80 +0.7 992,468 - ABZR87_RS04760 0.80 +3.1 992,468 - ABZR87_RS04760 0.80 -0.3 992,545 + ABZR87_RS04760 0.85 +0.5 992,545 + ABZR87_RS04760 0.85 -0.2 992,545 + ABZR87_RS04760 0.85 -0.9 992,545 + ABZR87_RS04760 0.85 -1.9 992,545 + ABZR87_RS04760 0.85 +1.5 992,545 + ABZR87_RS04760 0.85 +0.3 992,545 + ABZR87_RS04760 0.85 +0.1 992,545 + ABZR87_RS04760 0.85 -0.6 992,545 + ABZR87_RS04760 0.85 +0.4 992,545 + ABZR87_RS04760 0.85 -0.6 992,545 + ABZR87_RS04760 0.85 +0.1 992,545 + ABZR87_RS04760 0.85 -1.0 992,545 + ABZR87_RS04760 0.85 +1.3 992,546 - ABZR87_RS04760 0.85 +1.2 992,546 - ABZR87_RS04760 0.85 -0.5 992,546 - ABZR87_RS04760 0.85 -0.7 992,546 - ABZR87_RS04760 0.85 +0.5 992,546 - ABZR87_RS04760 0.85 -0.1 992,726 + -1.3 992,726 + +0.3 992,726 + -0.7 992,726 + -1.1 992,726 + +0.3 992,726 + +0.6 992,727 - +0.3 992,803 + -0.1 992,871 - +0.4 992,871 - +1.8 992,871 - -0.2 993,111 + +1.5 993,111 + +1.0 993,111 + -0.1 993,123 + +0.5 993,123 + -1.0 993,123 + -2.3 993,123 + +1.3 993,123 + +2.1 993,124 - +1.0 993,124 - -0.2 993,126 + +0.1 993,127 - +1.0 993,147 - +0.1 993,209 + ABZR87_RS04765 0.12 +4.1 993,210 - ABZR87_RS04765 0.12 -0.9 993,341 + ABZR87_RS04765 0.27 +0.3 993,341 + ABZR87_RS04765 0.27 +0.0 993,342 - ABZR87_RS04765 0.27 +3.1 993,342 - ABZR87_RS04765 0.27 +1.4 993,611 + ABZR87_RS04765 0.57 -1.5 993,611 + ABZR87_RS04765 0.57 +0.6 993,611 + ABZR87_RS04765 0.57 +1.1 993,611 + ABZR87_RS04765 0.57 +1.1 993,611 + ABZR87_RS04765 0.57 +0.4 993,612 - ABZR87_RS04765 0.57 -0.3 993,612 - ABZR87_RS04765 0.57 -1.8 993,612 - ABZR87_RS04765 0.57 +1.4 993,734 + ABZR87_RS04765 0.70 -0.8 993,734 + ABZR87_RS04765 0.70 -2.5 993,734 + ABZR87_RS04765 0.70 -2.9 993,734 + ABZR87_RS04765 0.70 -1.0 993,734 + ABZR87_RS04765 0.70 -1.4 993,734 + ABZR87_RS04765 0.70 +0.5 993,734 + ABZR87_RS04765 0.70 +0.8 993,735 - ABZR87_RS04765 0.70 +0.6 993,735 - ABZR87_RS04765 0.70 +1.7 993,735 - ABZR87_RS04765 0.70 -1.1 993,735 - ABZR87_RS04765 0.70 +0.4 993,735 - ABZR87_RS04765 0.70 +0.3 993,735 - ABZR87_RS04765 0.70 +0.9 993,735 - ABZR87_RS04765 0.70 -0.8 993,735 - ABZR87_RS04765 0.70 -0.3 993,735 - ABZR87_RS04765 0.70 +0.7 993,735 - ABZR87_RS04765 0.70 -0.2 993,735 - ABZR87_RS04765 0.70 -0.8 993,735 - ABZR87_RS04765 0.70 +0.1 993,735 - ABZR87_RS04765 0.70 -1.0 993,735 - ABZR87_RS04765 0.70 +1.6 993,735 - ABZR87_RS04765 0.70 +0.4 993,735 - ABZR87_RS04765 0.70 -1.3 993,836 + ABZR87_RS04765 0.81 +0.6 993,837 - ABZR87_RS04765 0.81 +0.3 993,837 - ABZR87_RS04765 0.81 +1.1 993,837 - ABZR87_RS04765 0.81 +1.7 994,030 - -0.6 994,037 + +3.4 994,037 + +1.3 994,038 - -2.2 994,038 - +6.7 994,038 - -0.9 994,155 - -0.9 994,155 - +1.3 994,155 - +1.5 994,155 - -2.3 994,171 + +0.8 994,171 + -0.0 994,173 + -1.5 994,174 - +2.1 994,203 - -0.3 994,284 + -1.6 994,284 + -1.0 994,284 + +0.0 994,284 + +1.0 994,285 - -0.4 994,285 - +2.5 994,659 + ABZR87_RS04770 0.23 +0.5 994,710 + ABZR87_RS04770 0.26 -0.7 994,710 + ABZR87_RS04770 0.26 -0.2 994,710 + ABZR87_RS04770 0.26 +0.8 994,711 - ABZR87_RS04770 0.26 -1.1
Or see this region's nucleotide sequence