Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04630 and ABZR87_RS04635 are separated by 86 nucleotides ABZR87_RS04635 and ABZR87_RS04640 are separated by 48 nucleotides ABZR87_RS04640 and ABZR87_RS04645 are separated by 4 nucleotides
ABZR87_RS04630: ABZR87_RS04630 - PLP-dependent aminotransferase family protein, at 968,288 to 969,745
_RS04630
ABZR87_RS04635: ABZR87_RS04635 - carboxymuconolactone decarboxylase family protein, at 969,832 to 970,269
_RS04635
ABZR87_RS04640: ABZR87_RS04640 - hypothetical protein, at 970,318 to 970,749
_RS04640
ABZR87_RS04645: ABZR87_RS04645 - MFS transporter, at 970,754 to 972,073
_RS04645
Position (kb) 969
970
971 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 968.951 kb on + strand, within ABZR87_RS04630 at 969.062 kb on + strand, within ABZR87_RS04630 at 969.062 kb on + strand, within ABZR87_RS04630 at 969.062 kb on + strand, within ABZR87_RS04630 at 969.062 kb on + strand, within ABZR87_RS04630 at 969.063 kb on - strand, within ABZR87_RS04630 at 969.063 kb on - strand, within ABZR87_RS04630 at 969.173 kb on + strand, within ABZR87_RS04630 at 969.173 kb on + strand, within ABZR87_RS04630 at 969.173 kb on + strand, within ABZR87_RS04630 at 969.174 kb on - strand, within ABZR87_RS04630 at 969.174 kb on - strand, within ABZR87_RS04630 at 969.174 kb on - strand, within ABZR87_RS04630 at 969.248 kb on + strand, within ABZR87_RS04630 at 969.249 kb on - strand, within ABZR87_RS04630 at 969.249 kb on - strand, within ABZR87_RS04630 at 969.249 kb on - strand, within ABZR87_RS04630 at 969.249 kb on - strand, within ABZR87_RS04630 at 969.249 kb on - strand, within ABZR87_RS04630 at 969.249 kb on - strand, within ABZR87_RS04630 at 969.249 kb on - strand, within ABZR87_RS04630 at 969.249 kb on - strand, within ABZR87_RS04630 at 969.296 kb on + strand, within ABZR87_RS04630 at 969.296 kb on + strand, within ABZR87_RS04630 at 969.296 kb on + strand, within ABZR87_RS04630 at 969.296 kb on + strand, within ABZR87_RS04630 at 969.297 kb on - strand, within ABZR87_RS04630 at 969.297 kb on - strand, within ABZR87_RS04630 at 969.422 kb on + strand, within ABZR87_RS04630 at 969.422 kb on + strand, within ABZR87_RS04630 at 969.422 kb on + strand, within ABZR87_RS04630 at 969.422 kb on + strand, within ABZR87_RS04630 at 969.422 kb on + strand, within ABZR87_RS04630 at 969.423 kb on - strand, within ABZR87_RS04630 at 969.423 kb on - strand, within ABZR87_RS04630 at 969.426 kb on + strand, within ABZR87_RS04630 at 969.426 kb on + strand, within ABZR87_RS04630 at 969.426 kb on + strand, within ABZR87_RS04630 at 969.426 kb on + strand, within ABZR87_RS04630 at 969.426 kb on + strand, within ABZR87_RS04630 at 969.427 kb on - strand, within ABZR87_RS04630 at 969.446 kb on + strand, within ABZR87_RS04630 at 969.446 kb on + strand, within ABZR87_RS04630 at 969.447 kb on - strand, within ABZR87_RS04630 at 969.447 kb on - strand, within ABZR87_RS04630 at 969.535 kb on + strand, within ABZR87_RS04630 at 969.535 kb on + strand, within ABZR87_RS04630 at 969.535 kb on + strand, within ABZR87_RS04630 at 969.535 kb on + strand, within ABZR87_RS04630 at 969.536 kb on - strand, within ABZR87_RS04630 at 969.536 kb on - strand, within ABZR87_RS04630 at 969.536 kb on - strand, within ABZR87_RS04630 at 969.611 kb on + strand at 969.612 kb on - strand at 969.612 kb on - strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.630 kb on - strand at 969.630 kb on - strand at 969.630 kb on - strand at 969.630 kb on - strand at 969.630 kb on - strand at 969.630 kb on - strand at 969.630 kb on - strand at 969.630 kb on - strand at 969.746 kb on + strand at 969.746 kb on + strand at 969.747 kb on - strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.789 kb on - strand at 969.809 kb on + strand at 969.810 kb on - strand at 969.810 kb on - strand at 969.810 kb on - strand at 969.819 kb on - strand at 969.819 kb on - strand at 969.853 kb on + strand at 969.853 kb on + strand at 969.853 kb on + strand at 969.853 kb on + strand at 969.854 kb on - strand at 969.854 kb on - strand at 969.854 kb on - strand at 969.854 kb on - strand at 969.979 kb on + strand, within ABZR87_RS04635 at 969.979 kb on + strand, within ABZR87_RS04635 at 969.979 kb on + strand, within ABZR87_RS04635 at 969.979 kb on + strand, within ABZR87_RS04635 at 969.979 kb on + strand, within ABZR87_RS04635 at 969.980 kb on - strand, within ABZR87_RS04635 at 969.980 kb on - strand, within ABZR87_RS04635 at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.279 kb on - strand at 970.279 kb on - strand at 970.279 kb on - strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.594 kb on + strand, within ABZR87_RS04640 at 970.594 kb on + strand, within ABZR87_RS04640 at 970.594 kb on + strand, within ABZR87_RS04640 at 970.595 kb on - strand, within ABZR87_RS04640 at 970.715 kb on + strand at 970.716 kb on - strand at 970.716 kb on - strand at 970.716 kb on - strand at 970.904 kb on + strand, within ABZR87_RS04645 at 970.936 kb on + strand, within ABZR87_RS04645 at 970.936 kb on + strand, within ABZR87_RS04645 at 970.944 kb on + strand, within ABZR87_RS04645 at 970.944 kb on + strand, within ABZR87_RS04645 at 970.945 kb on - strand, within ABZR87_RS04645 at 970.945 kb on - strand, within ABZR87_RS04645
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 968,951 + ABZR87_RS04630 0.45 -0.2 969,062 + ABZR87_RS04630 0.53 +0.7 969,062 + ABZR87_RS04630 0.53 +1.5 969,062 + ABZR87_RS04630 0.53 -0.8 969,062 + ABZR87_RS04630 0.53 +0.2 969,063 - ABZR87_RS04630 0.53 -0.4 969,063 - ABZR87_RS04630 0.53 -0.4 969,173 + ABZR87_RS04630 0.61 +1.9 969,173 + ABZR87_RS04630 0.61 -0.1 969,173 + ABZR87_RS04630 0.61 -0.5 969,174 - ABZR87_RS04630 0.61 +0.6 969,174 - ABZR87_RS04630 0.61 -0.9 969,174 - ABZR87_RS04630 0.61 -0.2 969,248 + ABZR87_RS04630 0.66 +2.8 969,249 - ABZR87_RS04630 0.66 +2.5 969,249 - ABZR87_RS04630 0.66 +2.5 969,249 - ABZR87_RS04630 0.66 +1.8 969,249 - ABZR87_RS04630 0.66 -0.2 969,249 - ABZR87_RS04630 0.66 -0.8 969,249 - ABZR87_RS04630 0.66 +0.1 969,249 - ABZR87_RS04630 0.66 +0.2 969,249 - ABZR87_RS04630 0.66 +0.0 969,296 + ABZR87_RS04630 0.69 +0.1 969,296 + ABZR87_RS04630 0.69 +1.0 969,296 + ABZR87_RS04630 0.69 +0.3 969,296 + ABZR87_RS04630 0.69 +1.0 969,297 - ABZR87_RS04630 0.69 -1.2 969,297 - ABZR87_RS04630 0.69 +2.1 969,422 + ABZR87_RS04630 0.78 -0.9 969,422 + ABZR87_RS04630 0.78 -0.5 969,422 + ABZR87_RS04630 0.78 -0.4 969,422 + ABZR87_RS04630 0.78 +0.2 969,422 + ABZR87_RS04630 0.78 +0.4 969,423 - ABZR87_RS04630 0.78 +1.0 969,423 - ABZR87_RS04630 0.78 +1.6 969,426 + ABZR87_RS04630 0.78 +1.5 969,426 + ABZR87_RS04630 0.78 +0.6 969,426 + ABZR87_RS04630 0.78 -0.4 969,426 + ABZR87_RS04630 0.78 +0.5 969,426 + ABZR87_RS04630 0.78 +0.0 969,427 - ABZR87_RS04630 0.78 -0.6 969,446 + ABZR87_RS04630 0.79 -1.9 969,446 + ABZR87_RS04630 0.79 +0.3 969,447 - ABZR87_RS04630 0.79 +0.6 969,447 - ABZR87_RS04630 0.79 +0.2 969,535 + ABZR87_RS04630 0.86 -0.4 969,535 + ABZR87_RS04630 0.86 -3.0 969,535 + ABZR87_RS04630 0.86 -1.4 969,535 + ABZR87_RS04630 0.86 +1.7 969,536 - ABZR87_RS04630 0.86 +1.2 969,536 - ABZR87_RS04630 0.86 -2.1 969,536 - ABZR87_RS04630 0.86 +0.1 969,611 + +0.1 969,612 - -2.5 969,612 - +1.5 969,629 + -0.6 969,629 + +0.4 969,629 + -1.7 969,629 + -1.1 969,629 + +0.5 969,629 + -1.5 969,629 + -0.2 969,629 + +0.1 969,629 + +0.8 969,629 + -0.4 969,629 + -1.2 969,629 + -0.5 969,629 + -1.1 969,630 - -0.0 969,630 - -0.3 969,630 - -0.5 969,630 - +0.4 969,630 - -0.6 969,630 - -0.5 969,630 - +1.8 969,630 - +1.9 969,746 + +0.4 969,746 + -0.7 969,747 - -1.6 969,788 + -0.2 969,788 + +0.5 969,788 + -0.8 969,788 + +0.2 969,788 + +5.1 969,788 + -0.7 969,788 + -0.7 969,788 + +1.3 969,789 - +0.1 969,809 + +1.2 969,810 - +0.8 969,810 - -0.8 969,810 - -2.2 969,819 - +0.4 969,819 - -0.3 969,853 + -1.5 969,853 + +0.3 969,853 + +1.4 969,853 + -1.0 969,854 - +2.5 969,854 - +2.9 969,854 - +0.1 969,854 - +0.8 969,979 + ABZR87_RS04635 0.34 -1.2 969,979 + ABZR87_RS04635 0.34 +3.1 969,979 + ABZR87_RS04635 0.34 -0.4 969,979 + ABZR87_RS04635 0.34 -1.9 969,979 + ABZR87_RS04635 0.34 -1.3 969,980 - ABZR87_RS04635 0.34 -0.8 969,980 - ABZR87_RS04635 0.34 -2.0 970,278 + -0.9 970,278 + -1.1 970,278 + +0.7 970,278 + +0.3 970,278 + -1.0 970,278 + +0.6 970,278 + -1.5 970,278 + -0.1 970,278 + +0.9 970,278 + +0.5 970,279 - -1.9 970,279 - +2.0 970,279 - -0.6 970,280 + +0.2 970,280 + +1.4 970,280 + -2.3 970,280 + +0.3 970,280 + +4.7 970,280 + -1.2 970,280 + -0.5 970,280 + -1.5 970,280 + +0.4 970,281 - +0.5 970,281 - +3.9 970,281 - +1.1 970,281 - +1.2 970,281 - +1.0 970,281 - -1.5 970,281 - -0.6 970,594 + ABZR87_RS04640 0.64 -1.9 970,594 + ABZR87_RS04640 0.64 -0.2 970,594 + ABZR87_RS04640 0.64 +0.7 970,595 - ABZR87_RS04640 0.64 -0.2 970,715 + +1.8 970,716 - +0.2 970,716 - +0.4 970,716 - -1.6 970,904 + ABZR87_RS04645 0.11 +2.6 970,936 + ABZR87_RS04645 0.14 +1.4 970,936 + ABZR87_RS04645 0.14 -0.2 970,944 + ABZR87_RS04645 0.14 -0.4 970,944 + ABZR87_RS04645 0.14 -0.5 970,945 - ABZR87_RS04645 0.14 +0.7 970,945 - ABZR87_RS04645 0.14 +0.5
Or see this region's nucleotide sequence