Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03765

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03755 and ABZR87_RS03760 are separated by 12 nucleotidesABZR87_RS03760 and ABZR87_RS03765 are separated by 16 nucleotidesABZR87_RS03765 and ABZR87_RS03770 are separated by 40 nucleotidesABZR87_RS03770 and ABZR87_RS03775 are separated by 16 nucleotidesABZR87_RS03775 and ABZR87_RS03780 are separated by 18 nucleotides ABZR87_RS03755: ABZR87_RS03755 - TlpA disulfide reductase family protein, at 780,853 to 781,365 _RS03755 ABZR87_RS03760: ABZR87_RS03760 - sulfur oxidation c-type cytochrome SoxX, at 781,378 to 782,040 _RS03760 ABZR87_RS03765: ABZR87_RS03765 - sulfur oxidation c-type cytochrome SoxA, at 782,057 to 782,857 _RS03765 ABZR87_RS03770: ABZR87_RS03770 - DsrE family protein, at 782,898 to 783,353 _RS03770 ABZR87_RS03775: ABZR87_RS03775 - thiosulfate oxidation carrier complex protein SoxZ, at 783,370 to 783,681 _RS03775 ABZR87_RS03780: ABZR87_RS03780 - thiosulfate oxidation carrier protein SoxY, at 783,700 to 784,170 _RS03780 Position (kb) 782 783Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 781.359 kb on + strandat 781.360 kb on - strandat 781.379 kb on + strandat 781.380 kb on - strandat 781.380 kb on - strandat 781.490 kb on + strand, within ABZR87_RS03760at 781.490 kb on + strand, within ABZR87_RS03760at 781.491 kb on - strand, within ABZR87_RS03760at 781.505 kb on + strand, within ABZR87_RS03760at 781.505 kb on + strand, within ABZR87_RS03760at 781.505 kb on + strand, within ABZR87_RS03760at 781.505 kb on + strand, within ABZR87_RS03760at 781.506 kb on - strand, within ABZR87_RS03760at 781.506 kb on - strand, within ABZR87_RS03760at 781.506 kb on - strand, within ABZR87_RS03760at 781.506 kb on - strand, within ABZR87_RS03760at 781.506 kb on - strand, within ABZR87_RS03760at 781.506 kb on - strand, within ABZR87_RS03760at 781.524 kb on - strand, within ABZR87_RS03760at 781.524 kb on - strand, within ABZR87_RS03760at 781.524 kb on - strand, within ABZR87_RS03760at 781.524 kb on - strand, within ABZR87_RS03760at 781.562 kb on + strand, within ABZR87_RS03760at 781.563 kb on - strand, within ABZR87_RS03760at 781.568 kb on + strand, within ABZR87_RS03760at 781.569 kb on - strand, within ABZR87_RS03760at 781.628 kb on + strand, within ABZR87_RS03760at 781.628 kb on + strand, within ABZR87_RS03760at 781.629 kb on - strand, within ABZR87_RS03760at 781.629 kb on - strand, within ABZR87_RS03760at 781.629 kb on - strand, within ABZR87_RS03760at 781.629 kb on - strand, within ABZR87_RS03760at 781.629 kb on - strand, within ABZR87_RS03760at 781.742 kb on + strand, within ABZR87_RS03760at 781.743 kb on - strand, within ABZR87_RS03760at 781.743 kb on - strand, within ABZR87_RS03760at 781.999 kb on + strandat 782.000 kb on - strandat 782.145 kb on + strand, within ABZR87_RS03765at 782.146 kb on - strand, within ABZR87_RS03765at 782.146 kb on - strand, within ABZR87_RS03765at 782.184 kb on + strand, within ABZR87_RS03765at 782.184 kb on + strand, within ABZR87_RS03765at 782.184 kb on + strand, within ABZR87_RS03765at 782.184 kb on + strand, within ABZR87_RS03765at 782.184 kb on + strand, within ABZR87_RS03765at 782.185 kb on - strand, within ABZR87_RS03765at 782.185 kb on - strand, within ABZR87_RS03765at 782.185 kb on - strand, within ABZR87_RS03765at 782.185 kb on - strand, within ABZR87_RS03765at 782.185 kb on - strand, within ABZR87_RS03765at 782.185 kb on - strand, within ABZR87_RS03765at 782.208 kb on - strand, within ABZR87_RS03765at 782.208 kb on - strand, within ABZR87_RS03765at 782.247 kb on + strand, within ABZR87_RS03765at 782.247 kb on + strand, within ABZR87_RS03765at 782.247 kb on + strand, within ABZR87_RS03765at 782.247 kb on + strand, within ABZR87_RS03765at 782.247 kb on + strand, within ABZR87_RS03765at 782.247 kb on + strand, within ABZR87_RS03765at 782.248 kb on - strand, within ABZR87_RS03765at 782.248 kb on - strand, within ABZR87_RS03765at 782.346 kb on + strand, within ABZR87_RS03765at 782.347 kb on - strand, within ABZR87_RS03765at 782.347 kb on - strand, within ABZR87_RS03765at 782.347 kb on - strand, within ABZR87_RS03765at 782.388 kb on + strand, within ABZR87_RS03765at 782.388 kb on + strand, within ABZR87_RS03765at 782.389 kb on - strand, within ABZR87_RS03765at 782.389 kb on - strand, within ABZR87_RS03765at 782.457 kb on + strand, within ABZR87_RS03765at 782.457 kb on + strand, within ABZR87_RS03765at 782.457 kb on + strand, within ABZR87_RS03765at 782.457 kb on + strand, within ABZR87_RS03765at 782.457 kb on + strand, within ABZR87_RS03765at 782.457 kb on + strand, within ABZR87_RS03765at 782.458 kb on - strand, within ABZR87_RS03765at 782.458 kb on - strand, within ABZR87_RS03765at 782.458 kb on - strand, within ABZR87_RS03765at 782.458 kb on - strand, within ABZR87_RS03765at 782.458 kb on - strand, within ABZR87_RS03765at 782.458 kb on - strand, within ABZR87_RS03765at 782.458 kb on - strand, within ABZR87_RS03765at 782.605 kb on - strand, within ABZR87_RS03765at 782.605 kb on - strand, within ABZR87_RS03765at 782.605 kb on - strand, within ABZR87_RS03765at 782.623 kb on - strand, within ABZR87_RS03765at 782.767 kb on - strand, within ABZR87_RS03765at 782.909 kb on + strandat 782.909 kb on + strandat 782.909 kb on + strandat 782.910 kb on - strandat 782.911 kb on + strandat 782.911 kb on + strandat 782.911 kb on + strandat 782.911 kb on + strandat 782.912 kb on - strandat 782.912 kb on - strandat 782.912 kb on - strandat 783.235 kb on + strand, within ABZR87_RS03770at 783.235 kb on + strand, within ABZR87_RS03770at 783.236 kb on - strand, within ABZR87_RS03770at 783.236 kb on - strand, within ABZR87_RS03770at 783.236 kb on - strand, within ABZR87_RS03770at 783.236 kb on - strand, within ABZR87_RS03770at 783.236 kb on - strand, within ABZR87_RS03770at 783.236 kb on - strand, within ABZR87_RS03770at 783.247 kb on + strand, within ABZR87_RS03770at 783.247 kb on + strand, within ABZR87_RS03770at 783.248 kb on - strand, within ABZR87_RS03770at 783.248 kb on - strand, within ABZR87_RS03770at 783.371 kb on + strandat 783.371 kb on + strandat 783.378 kb on + strandat 783.378 kb on + strandat 783.378 kb on + strandat 783.379 kb on - strandat 783.379 kb on - strandat 783.379 kb on - strandat 783.379 kb on - strandat 783.379 kb on - strandat 783.379 kb on - strandat 783.780 kb on - strand, within ABZR87_RS03780at 783.780 kb on - strand, within ABZR87_RS03780

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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781,359 + +1.2
781,360 - +0.2
781,379 + +4.1
781,380 - +0.9
781,380 - -0.3
781,490 + ABZR87_RS03760 0.17 -2.2
781,490 + ABZR87_RS03760 0.17 -0.9
781,491 - ABZR87_RS03760 0.17 +0.2
781,505 + ABZR87_RS03760 0.19 +0.1
781,505 + ABZR87_RS03760 0.19 +1.4
781,505 + ABZR87_RS03760 0.19 +0.5
781,505 + ABZR87_RS03760 0.19 +3.5
781,506 - ABZR87_RS03760 0.19 +0.7
781,506 - ABZR87_RS03760 0.19 +1.3
781,506 - ABZR87_RS03760 0.19 +0.5
781,506 - ABZR87_RS03760 0.19 +1.4
781,506 - ABZR87_RS03760 0.19 -0.6
781,506 - ABZR87_RS03760 0.19 +0.2
781,524 - ABZR87_RS03760 0.22 +1.1
781,524 - ABZR87_RS03760 0.22 -0.3
781,524 - ABZR87_RS03760 0.22 -0.7
781,524 - ABZR87_RS03760 0.22 -1.7
781,562 + ABZR87_RS03760 0.28 -0.5
781,563 - ABZR87_RS03760 0.28 +0.8
781,568 + ABZR87_RS03760 0.29 +1.8
781,569 - ABZR87_RS03760 0.29 -0.5
781,628 + ABZR87_RS03760 0.38 +0.5
781,628 + ABZR87_RS03760 0.38 +0.6
781,629 - ABZR87_RS03760 0.38 +0.3
781,629 - ABZR87_RS03760 0.38 -1.1
781,629 - ABZR87_RS03760 0.38 -0.2
781,629 - ABZR87_RS03760 0.38 +0.1
781,629 - ABZR87_RS03760 0.38 -1.8
781,742 + ABZR87_RS03760 0.55 -0.9
781,743 - ABZR87_RS03760 0.55 +0.7
781,743 - ABZR87_RS03760 0.55 +1.7
781,999 + +0.0
782,000 - -0.5
782,145 + ABZR87_RS03765 0.11 +0.6
782,146 - ABZR87_RS03765 0.11 +1.2
782,146 - ABZR87_RS03765 0.11 -0.5
782,184 + ABZR87_RS03765 0.16 +0.5
782,184 + ABZR87_RS03765 0.16 -0.8
782,184 + ABZR87_RS03765 0.16 +1.6
782,184 + ABZR87_RS03765 0.16 -0.8
782,184 + ABZR87_RS03765 0.16 +2.5
782,185 - ABZR87_RS03765 0.16 +1.0
782,185 - ABZR87_RS03765 0.16 +4.1
782,185 - ABZR87_RS03765 0.16 +1.4
782,185 - ABZR87_RS03765 0.16 +1.5
782,185 - ABZR87_RS03765 0.16 +0.2
782,185 - ABZR87_RS03765 0.16 +0.9
782,208 - ABZR87_RS03765 0.19 +0.0
782,208 - ABZR87_RS03765 0.19 -1.3
782,247 + ABZR87_RS03765 0.24 +0.2
782,247 + ABZR87_RS03765 0.24 -0.8
782,247 + ABZR87_RS03765 0.24 -0.9
782,247 + ABZR87_RS03765 0.24 +0.1
782,247 + ABZR87_RS03765 0.24 +2.2
782,247 + ABZR87_RS03765 0.24 +0.0
782,248 - ABZR87_RS03765 0.24 +0.4
782,248 - ABZR87_RS03765 0.24 +0.9
782,346 + ABZR87_RS03765 0.36 +1.1
782,347 - ABZR87_RS03765 0.36 +2.3
782,347 - ABZR87_RS03765 0.36 +0.3
782,347 - ABZR87_RS03765 0.36 +0.3
782,388 + ABZR87_RS03765 0.41 +0.4
782,388 + ABZR87_RS03765 0.41 -0.3
782,389 - ABZR87_RS03765 0.41 +3.2
782,389 - ABZR87_RS03765 0.41 -0.7
782,457 + ABZR87_RS03765 0.50 -0.7
782,457 + ABZR87_RS03765 0.50 +0.3
782,457 + ABZR87_RS03765 0.50 +0.4
782,457 + ABZR87_RS03765 0.50 +1.2
782,457 + ABZR87_RS03765 0.50 +0.9
782,457 + ABZR87_RS03765 0.50 +2.1
782,458 - ABZR87_RS03765 0.50 +0.4
782,458 - ABZR87_RS03765 0.50 +0.6
782,458 - ABZR87_RS03765 0.50 -0.5
782,458 - ABZR87_RS03765 0.50 +1.1
782,458 - ABZR87_RS03765 0.50 +0.2
782,458 - ABZR87_RS03765 0.50 +0.2
782,458 - ABZR87_RS03765 0.50 -0.2
782,605 - ABZR87_RS03765 0.68 -1.0
782,605 - ABZR87_RS03765 0.68 +1.1
782,605 - ABZR87_RS03765 0.68 +0.8
782,623 - ABZR87_RS03765 0.71 -1.0
782,767 - ABZR87_RS03765 0.89 +2.4
782,909 + +0.5
782,909 + +0.1
782,909 + +0.7
782,910 - -1.7
782,911 + -0.1
782,911 + -1.7
782,911 + +2.1
782,911 + +0.1
782,912 - -0.9
782,912 - +2.6
782,912 - -2.3
783,235 + ABZR87_RS03770 0.74 +0.7
783,235 + ABZR87_RS03770 0.74 -0.1
783,236 - ABZR87_RS03770 0.74 -0.9
783,236 - ABZR87_RS03770 0.74 +0.6
783,236 - ABZR87_RS03770 0.74 +1.7
783,236 - ABZR87_RS03770 0.74 -0.1
783,236 - ABZR87_RS03770 0.74 -1.4
783,236 - ABZR87_RS03770 0.74 -0.2
783,247 + ABZR87_RS03770 0.77 -1.6
783,247 + ABZR87_RS03770 0.77 -0.3
783,248 - ABZR87_RS03770 0.77 +0.3
783,248 - ABZR87_RS03770 0.77 -0.4
783,371 + -0.0
783,371 + +0.8
783,378 + +2.2
783,378 + -1.1
783,378 + +0.5
783,379 - +0.2
783,379 - +1.1
783,379 - -1.3
783,379 - -0.3
783,379 - +2.5
783,379 - -0.3
783,780 - ABZR87_RS03780 0.17 +0.9
783,780 - ABZR87_RS03780 0.17 -0.5

Or see this region's nucleotide sequence