Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03315 and ABZR87_RS03320 are separated by 24 nucleotides ABZR87_RS03320 and ABZR87_RS03325 are separated by 398 nucleotides ABZR87_RS03325 and ABZR87_RS03330 are separated by 30 nucleotides ABZR87_RS03330 and ABZR87_RS03335 are separated by 102 nucleotides ABZR87_RS03335 and ABZR87_RS03340 are separated by 12 nucleotides
ABZR87_RS03315: ABZR87_RS03315 - glutathione-regulated potassium-efflux system protein KefC, at 699,107 to 701,047
_RS03315
ABZR87_RS03320: ABZR87_RS03320 - NAD(P)H-dependent oxidoreductase, at 701,072 to 701,623
_RS03320
ABZR87_RS03325: ABZR87_RS03325 - GNAT family N-acetyltransferase, at 702,022 to 702,717
_RS03325
ABZR87_RS03330: ABZR87_RS03330 - MarR family transcriptional regulator, at 702,748 to 703,215
_RS03330
ABZR87_RS03335: ABZR87_RS03335 - hypothetical protein, at 703,318 to 703,671
_RS03335
ABZR87_RS03340: ABZR87_RS03340 - VOC family protein, at 703,684 to 704,076
_RS03340
Position (kb) 702
703 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 701.023 kb on + strand at 701.024 kb on - strand at 701.273 kb on - strand, within ABZR87_RS03320 at 701.274 kb on + strand, within ABZR87_RS03320 at 701.274 kb on + strand, within ABZR87_RS03320 at 701.274 kb on + strand, within ABZR87_RS03320 at 701.274 kb on + strand, within ABZR87_RS03320 at 701.275 kb on - strand, within ABZR87_RS03320 at 701.275 kb on - strand, within ABZR87_RS03320 at 701.275 kb on - strand, within ABZR87_RS03320 at 701.275 kb on - strand, within ABZR87_RS03320 at 701.275 kb on - strand, within ABZR87_RS03320 at 701.275 kb on - strand, within ABZR87_RS03320 at 701.409 kb on + strand, within ABZR87_RS03320 at 701.410 kb on - strand, within ABZR87_RS03320 at 701.496 kb on + strand, within ABZR87_RS03320 at 701.496 kb on + strand, within ABZR87_RS03320 at 701.497 kb on - strand, within ABZR87_RS03320 at 701.497 kb on - strand, within ABZR87_RS03320 at 701.497 kb on - strand, within ABZR87_RS03320 at 701.505 kb on + strand, within ABZR87_RS03320 at 701.505 kb on + strand, within ABZR87_RS03320 at 701.506 kb on - strand, within ABZR87_RS03320 at 701.506 kb on - strand, within ABZR87_RS03320 at 701.595 kb on + strand at 701.595 kb on + strand at 701.595 kb on + strand at 701.595 kb on + strand at 701.596 kb on - strand at 701.596 kb on - strand at 701.671 kb on + strand at 701.671 kb on + strand at 701.671 kb on + strand at 701.671 kb on + strand at 701.671 kb on + strand at 701.671 kb on + strand at 701.672 kb on - strand at 701.821 kb on + strand at 701.821 kb on + strand at 701.834 kb on + strand at 701.834 kb on + strand at 701.892 kb on + strand at 701.892 kb on + strand at 701.892 kb on + strand at 701.892 kb on + strand at 701.897 kb on + strand at 701.897 kb on + strand at 701.897 kb on + strand at 701.898 kb on - strand at 701.898 kb on - strand at 701.898 kb on - strand at 701.900 kb on + strand at 701.900 kb on + strand at 701.900 kb on + strand at 701.900 kb on + strand at 701.901 kb on - strand at 701.901 kb on - strand at 702.116 kb on + strand, within ABZR87_RS03325 at 702.116 kb on + strand, within ABZR87_RS03325 at 702.116 kb on + strand, within ABZR87_RS03325 at 702.116 kb on + strand, within ABZR87_RS03325 at 702.239 kb on - strand, within ABZR87_RS03325 at 702.239 kb on - strand, within ABZR87_RS03325 at 702.239 kb on - strand, within ABZR87_RS03325 at 702.239 kb on - strand, within ABZR87_RS03325 at 702.239 kb on - strand, within ABZR87_RS03325 at 702.239 kb on - strand, within ABZR87_RS03325 at 702.239 kb on - strand, within ABZR87_RS03325 at 702.283 kb on + strand, within ABZR87_RS03325 at 702.283 kb on + strand, within ABZR87_RS03325 at 702.284 kb on - strand, within ABZR87_RS03325 at 702.284 kb on - strand, within ABZR87_RS03325 at 702.284 kb on - strand, within ABZR87_RS03325 at 702.326 kb on - strand, within ABZR87_RS03325 at 702.326 kb on - strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.464 kb on - strand, within ABZR87_RS03325 at 702.464 kb on - strand, within ABZR87_RS03325 at 702.464 kb on - strand, within ABZR87_RS03325 at 702.464 kb on - strand, within ABZR87_RS03325 at 702.464 kb on - strand, within ABZR87_RS03325 at 702.532 kb on + strand, within ABZR87_RS03325 at 702.533 kb on - strand, within ABZR87_RS03325 at 702.533 kb on - strand, within ABZR87_RS03325 at 702.533 kb on - strand, within ABZR87_RS03325 at 702.533 kb on - strand, within ABZR87_RS03325 at 702.533 kb on - strand, within ABZR87_RS03325 at 702.538 kb on + strand, within ABZR87_RS03325 at 702.556 kb on + strand, within ABZR87_RS03325 at 702.556 kb on + strand, within ABZR87_RS03325 at 702.631 kb on + strand, within ABZR87_RS03325 at 702.631 kb on + strand, within ABZR87_RS03325 at 702.631 kb on + strand, within ABZR87_RS03325 at 702.631 kb on + strand, within ABZR87_RS03325 at 702.631 kb on + strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.632 kb on - strand, within ABZR87_RS03325 at 702.715 kb on + strand at 702.716 kb on - strand at 702.716 kb on - strand at 702.716 kb on - strand at 702.716 kb on - strand at 702.716 kb on - strand at 702.716 kb on - strand at 702.762 kb on + strand at 702.762 kb on + strand at 702.762 kb on + strand at 702.763 kb on - strand at 702.763 kb on - strand at 702.763 kb on - strand at 702.763 kb on - strand at 702.763 kb on - strand at 702.763 kb on - strand at 702.763 kb on - strand at 702.976 kb on + strand, within ABZR87_RS03330 at 702.976 kb on + strand, within ABZR87_RS03330 at 702.977 kb on - strand, within ABZR87_RS03330 at 702.977 kb on - strand, within ABZR87_RS03330 at 702.977 kb on - strand, within ABZR87_RS03330 at 702.977 kb on - strand, within ABZR87_RS03330 at 702.977 kb on - strand, within ABZR87_RS03330 at 703.038 kb on + strand, within ABZR87_RS03330 at 703.039 kb on - strand, within ABZR87_RS03330 at 703.060 kb on - strand, within ABZR87_RS03330 at 703.224 kb on - strand at 703.228 kb on + strand at 703.258 kb on - strand at 703.568 kb on + strand, within ABZR87_RS03335 at 703.568 kb on + strand, within ABZR87_RS03335 at 703.569 kb on - strand, within ABZR87_RS03335 at 703.569 kb on - strand, within ABZR87_RS03335 at 703.569 kb on - strand, within ABZR87_RS03335 at 703.660 kb on + strand at 703.660 kb on + strand at 703.660 kb on + strand at 703.660 kb on + strand at 703.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 701,023 + -0.2 701,024 - -1.5 701,273 - ABZR87_RS03320 0.36 +1.1 701,274 + ABZR87_RS03320 0.37 -0.5 701,274 + ABZR87_RS03320 0.37 -2.0 701,274 + ABZR87_RS03320 0.37 -0.4 701,274 + ABZR87_RS03320 0.37 +0.9 701,275 - ABZR87_RS03320 0.37 +0.5 701,275 - ABZR87_RS03320 0.37 -1.3 701,275 - ABZR87_RS03320 0.37 +0.1 701,275 - ABZR87_RS03320 0.37 +1.9 701,275 - ABZR87_RS03320 0.37 -1.1 701,275 - ABZR87_RS03320 0.37 +0.4 701,409 + ABZR87_RS03320 0.61 +1.1 701,410 - ABZR87_RS03320 0.61 +0.3 701,496 + ABZR87_RS03320 0.77 -0.8 701,496 + ABZR87_RS03320 0.77 +0.9 701,497 - ABZR87_RS03320 0.77 -1.0 701,497 - ABZR87_RS03320 0.77 -0.6 701,497 - ABZR87_RS03320 0.77 +0.1 701,505 + ABZR87_RS03320 0.78 +2.9 701,505 + ABZR87_RS03320 0.78 +0.1 701,506 - ABZR87_RS03320 0.79 -0.2 701,506 - ABZR87_RS03320 0.79 -1.1 701,595 + +1.8 701,595 + +0.4 701,595 + -0.4 701,595 + -0.8 701,596 - +0.2 701,596 - +0.2 701,671 + +1.4 701,671 + -1.8 701,671 + -0.4 701,671 + +0.7 701,671 + +0.1 701,671 + +0.9 701,672 - -1.2 701,821 + +0.2 701,821 + +0.6 701,834 + +0.7 701,834 + -1.8 701,892 + -2.0 701,892 + -1.2 701,892 + +0.9 701,892 + -1.5 701,897 + -1.3 701,897 + -0.3 701,897 + +1.9 701,898 - -0.6 701,898 - +0.4 701,898 - -2.1 701,900 + +0.9 701,900 + -0.8 701,900 + -1.3 701,900 + -0.9 701,901 - -0.0 701,901 - +1.7 702,116 + ABZR87_RS03325 0.14 +0.1 702,116 + ABZR87_RS03325 0.14 +0.3 702,116 + ABZR87_RS03325 0.14 +0.0 702,116 + ABZR87_RS03325 0.14 -0.9 702,239 - ABZR87_RS03325 0.31 -1.7 702,239 - ABZR87_RS03325 0.31 -1.1 702,239 - ABZR87_RS03325 0.31 -1.4 702,239 - ABZR87_RS03325 0.31 +0.1 702,239 - ABZR87_RS03325 0.31 +0.9 702,239 - ABZR87_RS03325 0.31 +0.8 702,239 - ABZR87_RS03325 0.31 +0.6 702,283 + ABZR87_RS03325 0.38 -1.4 702,283 + ABZR87_RS03325 0.38 +0.6 702,284 - ABZR87_RS03325 0.38 +1.2 702,284 - ABZR87_RS03325 0.38 -2.0 702,284 - ABZR87_RS03325 0.38 +1.5 702,326 - ABZR87_RS03325 0.44 +0.0 702,326 - ABZR87_RS03325 0.44 -0.5 702,463 + ABZR87_RS03325 0.63 -0.0 702,463 + ABZR87_RS03325 0.63 -0.2 702,463 + ABZR87_RS03325 0.63 +2.4 702,463 + ABZR87_RS03325 0.63 +0.4 702,463 + ABZR87_RS03325 0.63 -0.2 702,463 + ABZR87_RS03325 0.63 +0.8 702,463 + ABZR87_RS03325 0.63 -1.2 702,463 + ABZR87_RS03325 0.63 +0.4 702,464 - ABZR87_RS03325 0.64 -0.7 702,464 - ABZR87_RS03325 0.64 -0.6 702,464 - ABZR87_RS03325 0.64 +2.9 702,464 - ABZR87_RS03325 0.64 -0.3 702,464 - ABZR87_RS03325 0.64 +0.1 702,532 + ABZR87_RS03325 0.73 +0.5 702,533 - ABZR87_RS03325 0.73 -1.2 702,533 - ABZR87_RS03325 0.73 -1.7 702,533 - ABZR87_RS03325 0.73 +0.9 702,533 - ABZR87_RS03325 0.73 +3.3 702,533 - ABZR87_RS03325 0.73 +0.6 702,538 + ABZR87_RS03325 0.74 -2.0 702,556 + ABZR87_RS03325 0.77 -0.7 702,556 + ABZR87_RS03325 0.77 -0.8 702,631 + ABZR87_RS03325 0.88 +0.4 702,631 + ABZR87_RS03325 0.88 +1.3 702,631 + ABZR87_RS03325 0.88 -2.3 702,631 + ABZR87_RS03325 0.88 -0.3 702,631 + ABZR87_RS03325 0.88 -0.3 702,632 - ABZR87_RS03325 0.88 -1.1 702,632 - ABZR87_RS03325 0.88 +0.6 702,632 - ABZR87_RS03325 0.88 -0.7 702,632 - ABZR87_RS03325 0.88 -0.4 702,632 - ABZR87_RS03325 0.88 -1.4 702,632 - ABZR87_RS03325 0.88 -0.4 702,632 - ABZR87_RS03325 0.88 -1.1 702,632 - ABZR87_RS03325 0.88 +0.5 702,632 - ABZR87_RS03325 0.88 -2.1 702,632 - ABZR87_RS03325 0.88 -1.4 702,632 - ABZR87_RS03325 0.88 -0.5 702,632 - ABZR87_RS03325 0.88 -1.0 702,715 + -0.4 702,716 - +0.8 702,716 - +1.8 702,716 - -1.2 702,716 - -0.1 702,716 - -0.2 702,716 - -0.7 702,762 + +3.3 702,762 + -0.3 702,762 + -0.2 702,763 - -0.4 702,763 - +0.9 702,763 - -2.6 702,763 - +1.9 702,763 - +0.8 702,763 - +0.9 702,763 - -0.5 702,976 + ABZR87_RS03330 0.49 -0.4 702,976 + ABZR87_RS03330 0.49 +0.5 702,977 - ABZR87_RS03330 0.49 -2.7 702,977 - ABZR87_RS03330 0.49 -1.2 702,977 - ABZR87_RS03330 0.49 -0.4 702,977 - ABZR87_RS03330 0.49 -0.8 702,977 - ABZR87_RS03330 0.49 -0.7 703,038 + ABZR87_RS03330 0.62 -0.1 703,039 - ABZR87_RS03330 0.62 +0.5 703,060 - ABZR87_RS03330 0.67 -0.4 703,224 - -1.2 703,228 + +2.1 703,258 - +0.9 703,568 + ABZR87_RS03335 0.71 -0.6 703,568 + ABZR87_RS03335 0.71 +0.7 703,569 - ABZR87_RS03335 0.71 +1.3 703,569 - ABZR87_RS03335 0.71 +1.3 703,569 - ABZR87_RS03335 0.71 +1.8 703,660 + +0.0 703,660 + -0.8 703,660 + -0.5 703,660 + -0.8 703,661 - +0.6
Or see this region's nucleotide sequence