Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02610 and ABZR87_RS02615 are separated by 2 nucleotides ABZR87_RS02615 and ABZR87_RS02620 are separated by 10 nucleotides ABZR87_RS02620 and ABZR87_RS02625 are separated by 452 nucleotides
ABZR87_RS02610: ABZR87_RS02610 - type 4a pilus biogenesis protein PilO, at 555,309 to 555,968
_RS02610
ABZR87_RS02615: ABZR87_RS02615 - PilN domain-containing protein, at 555,971 to 556,603
_RS02615
ABZR87_RS02620: ABZR87_RS02620 - type IV pilus biogenesis protein PilM, at 556,614 to 557,684
_RS02620
ABZR87_RS02625: ABZR87_RS02625 - penicillin-binding protein 1A, at 558,137 to 560,551
_RS02625
Position (kb) 556
557
558 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 555.729 kb on + strand, within ABZR87_RS02610 at 555.729 kb on + strand, within ABZR87_RS02610 at 555.729 kb on + strand, within ABZR87_RS02610 at 555.730 kb on - strand, within ABZR87_RS02610 at 555.752 kb on - strand, within ABZR87_RS02610 at 555.752 kb on - strand, within ABZR87_RS02610 at 555.817 kb on + strand, within ABZR87_RS02610 at 555.817 kb on + strand, within ABZR87_RS02610 at 555.817 kb on + strand, within ABZR87_RS02610 at 555.817 kb on + strand, within ABZR87_RS02610 at 555.817 kb on + strand, within ABZR87_RS02610 at 555.817 kb on + strand, within ABZR87_RS02610 at 555.817 kb on + strand, within ABZR87_RS02610 at 555.818 kb on - strand, within ABZR87_RS02610 at 555.840 kb on + strand, within ABZR87_RS02610 at 555.972 kb on + strand at 555.972 kb on + strand at 555.972 kb on + strand at 555.972 kb on + strand at 555.972 kb on + strand at 555.972 kb on + strand at 555.972 kb on + strand at 555.972 kb on + strand at 555.973 kb on - strand at 555.973 kb on - strand at 555.973 kb on - strand at 555.973 kb on - strand at 555.973 kb on - strand at 555.973 kb on - strand at 555.973 kb on - strand at 555.973 kb on - strand at 555.973 kb on - strand at 556.197 kb on + strand, within ABZR87_RS02615 at 556.198 kb on - strand, within ABZR87_RS02615 at 556.230 kb on + strand, within ABZR87_RS02615 at 556.230 kb on + strand, within ABZR87_RS02615 at 556.230 kb on + strand, within ABZR87_RS02615 at 556.230 kb on + strand, within ABZR87_RS02615 at 556.230 kb on + strand, within ABZR87_RS02615 at 556.230 kb on + strand, within ABZR87_RS02615 at 556.230 kb on + strand, within ABZR87_RS02615 at 556.231 kb on - strand, within ABZR87_RS02615 at 556.231 kb on - strand, within ABZR87_RS02615 at 556.231 kb on - strand, within ABZR87_RS02615 at 556.231 kb on - strand, within ABZR87_RS02615 at 556.231 kb on - strand, within ABZR87_RS02615 at 556.231 kb on - strand, within ABZR87_RS02615 at 556.231 kb on - strand, within ABZR87_RS02615 at 556.506 kb on + strand, within ABZR87_RS02615 at 556.508 kb on + strand, within ABZR87_RS02615 at 556.508 kb on + strand, within ABZR87_RS02615 at 556.508 kb on + strand, within ABZR87_RS02615 at 556.508 kb on + strand, within ABZR87_RS02615 at 556.508 kb on + strand, within ABZR87_RS02615 at 556.508 kb on + strand, within ABZR87_RS02615 at 556.509 kb on - strand, within ABZR87_RS02615 at 556.509 kb on - strand, within ABZR87_RS02615 at 556.509 kb on - strand, within ABZR87_RS02615 at 556.523 kb on - strand, within ABZR87_RS02615 at 556.546 kb on - strand at 556.615 kb on + strand at 556.615 kb on + strand at 556.616 kb on - strand at 556.654 kb on + strand at 556.654 kb on + strand at 556.654 kb on + strand at 556.654 kb on + strand at 556.655 kb on - strand at 556.655 kb on - strand at 556.655 kb on - strand at 556.709 kb on + strand at 556.709 kb on + strand at 556.710 kb on - strand at 556.736 kb on + strand, within ABZR87_RS02620 at 556.737 kb on - strand, within ABZR87_RS02620 at 556.737 kb on - strand, within ABZR87_RS02620 at 556.737 kb on - strand, within ABZR87_RS02620 at 556.737 kb on - strand, within ABZR87_RS02620 at 556.994 kb on + strand, within ABZR87_RS02620 at 556.994 kb on + strand, within ABZR87_RS02620 at 556.994 kb on + strand, within ABZR87_RS02620 at 556.994 kb on + strand, within ABZR87_RS02620 at 556.995 kb on - strand, within ABZR87_RS02620 at 556.995 kb on - strand, within ABZR87_RS02620 at 556.995 kb on - strand, within ABZR87_RS02620 at 557.029 kb on + strand, within ABZR87_RS02620 at 557.030 kb on - strand, within ABZR87_RS02620 at 557.050 kb on + strand, within ABZR87_RS02620 at 557.051 kb on - strand, within ABZR87_RS02620 at 557.051 kb on - strand, within ABZR87_RS02620 at 557.314 kb on + strand, within ABZR87_RS02620 at 557.314 kb on + strand, within ABZR87_RS02620 at 557.314 kb on + strand, within ABZR87_RS02620 at 557.314 kb on + strand, within ABZR87_RS02620 at 557.314 kb on + strand, within ABZR87_RS02620 at 557.315 kb on - strand, within ABZR87_RS02620 at 557.315 kb on - strand, within ABZR87_RS02620 at 557.315 kb on - strand, within ABZR87_RS02620 at 557.315 kb on - strand, within ABZR87_RS02620 at 557.315 kb on - strand, within ABZR87_RS02620 at 557.520 kb on - strand, within ABZR87_RS02620 at 557.645 kb on + strand at 557.645 kb on + strand at 557.649 kb on + strand at 557.650 kb on - strand at 557.650 kb on - strand at 557.660 kb on + strand at 557.717 kb on + strand at 557.717 kb on + strand at 557.718 kb on - strand at 557.764 kb on + strand at 557.764 kb on + strand at 557.773 kb on + strand at 557.773 kb on + strand at 557.773 kb on + strand at 557.773 kb on + strand at 557.774 kb on - strand at 557.774 kb on - strand at 557.805 kb on + strand at 557.925 kb on + strand at 557.925 kb on + strand at 557.926 kb on - strand at 557.926 kb on - strand at 557.926 kb on - strand at 557.932 kb on - strand at 557.982 kb on + strand at 557.983 kb on - strand at 557.983 kb on - strand at 557.983 kb on - strand at 558.045 kb on + strand at 558.045 kb on + strand at 558.045 kb on + strand at 558.045 kb on + strand at 558.045 kb on + strand at 558.045 kb on + strand at 558.046 kb on - strand at 558.046 kb on - strand at 558.046 kb on - strand at 558.046 kb on - strand at 558.055 kb on + strand at 558.055 kb on + strand at 558.055 kb on + strand at 558.055 kb on + strand at 558.056 kb on - strand at 558.056 kb on - strand at 558.056 kb on - strand at 558.056 kb on - strand at 558.056 kb on - strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.093 kb on - strand at 558.093 kb on - strand at 558.093 kb on - strand at 558.094 kb on + strand at 558.135 kb on + strand at 558.135 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 555,729 + ABZR87_RS02610 0.64 +1.3 555,729 + ABZR87_RS02610 0.64 -0.2 555,729 + ABZR87_RS02610 0.64 -0.0 555,730 - ABZR87_RS02610 0.64 +0.1 555,752 - ABZR87_RS02610 0.67 -0.4 555,752 - ABZR87_RS02610 0.67 -0.7 555,817 + ABZR87_RS02610 0.77 -0.7 555,817 + ABZR87_RS02610 0.77 -1.5 555,817 + ABZR87_RS02610 0.77 +0.4 555,817 + ABZR87_RS02610 0.77 -0.2 555,817 + ABZR87_RS02610 0.77 +0.9 555,817 + ABZR87_RS02610 0.77 -1.0 555,817 + ABZR87_RS02610 0.77 +1.3 555,818 - ABZR87_RS02610 0.77 -0.6 555,840 + ABZR87_RS02610 0.80 -0.7 555,972 + +0.9 555,972 + +2.5 555,972 + -0.2 555,972 + -0.4 555,972 + +0.5 555,972 + +0.4 555,972 + +0.6 555,972 + +0.3 555,973 - -0.0 555,973 - +1.7 555,973 - -0.3 555,973 - -0.0 555,973 - -1.9 555,973 - -1.5 555,973 - -0.7 555,973 - +3.1 555,973 - -0.3 556,197 + ABZR87_RS02615 0.36 +0.7 556,198 - ABZR87_RS02615 0.36 +0.8 556,230 + ABZR87_RS02615 0.41 -1.3 556,230 + ABZR87_RS02615 0.41 -1.4 556,230 + ABZR87_RS02615 0.41 +0.0 556,230 + ABZR87_RS02615 0.41 -1.8 556,230 + ABZR87_RS02615 0.41 +0.9 556,230 + ABZR87_RS02615 0.41 +1.5 556,230 + ABZR87_RS02615 0.41 +2.8 556,231 - ABZR87_RS02615 0.41 +1.0 556,231 - ABZR87_RS02615 0.41 -0.5 556,231 - ABZR87_RS02615 0.41 -0.3 556,231 - ABZR87_RS02615 0.41 +1.1 556,231 - ABZR87_RS02615 0.41 -0.7 556,231 - ABZR87_RS02615 0.41 -0.8 556,231 - ABZR87_RS02615 0.41 -1.5 556,506 + ABZR87_RS02615 0.85 -0.1 556,508 + ABZR87_RS02615 0.85 -1.2 556,508 + ABZR87_RS02615 0.85 -1.1 556,508 + ABZR87_RS02615 0.85 +0.1 556,508 + ABZR87_RS02615 0.85 -0.7 556,508 + ABZR87_RS02615 0.85 -0.3 556,508 + ABZR87_RS02615 0.85 +0.3 556,509 - ABZR87_RS02615 0.85 -1.8 556,509 - ABZR87_RS02615 0.85 -1.1 556,509 - ABZR87_RS02615 0.85 +1.5 556,523 - ABZR87_RS02615 0.87 +1.6 556,546 - +0.5 556,615 + -1.1 556,615 + +0.1 556,616 - -0.0 556,654 + +1.9 556,654 + +1.6 556,654 + -2.2 556,654 + -0.3 556,655 - -1.2 556,655 - +2.5 556,655 - -0.9 556,709 + +1.2 556,709 + -0.3 556,710 - +2.1 556,736 + ABZR87_RS02620 0.11 +0.6 556,737 - ABZR87_RS02620 0.11 +0.2 556,737 - ABZR87_RS02620 0.11 -1.1 556,737 - ABZR87_RS02620 0.11 -1.1 556,737 - ABZR87_RS02620 0.11 -0.7 556,994 + ABZR87_RS02620 0.35 +0.2 556,994 + ABZR87_RS02620 0.35 -0.2 556,994 + ABZR87_RS02620 0.35 +0.8 556,994 + ABZR87_RS02620 0.35 -1.6 556,995 - ABZR87_RS02620 0.36 -1.2 556,995 - ABZR87_RS02620 0.36 +0.4 556,995 - ABZR87_RS02620 0.36 -0.6 557,029 + ABZR87_RS02620 0.39 -0.7 557,030 - ABZR87_RS02620 0.39 +3.7 557,050 + ABZR87_RS02620 0.41 -0.2 557,051 - ABZR87_RS02620 0.41 -1.1 557,051 - ABZR87_RS02620 0.41 -0.8 557,314 + ABZR87_RS02620 0.65 -0.2 557,314 + ABZR87_RS02620 0.65 +0.5 557,314 + ABZR87_RS02620 0.65 -1.7 557,314 + ABZR87_RS02620 0.65 -0.4 557,314 + ABZR87_RS02620 0.65 -1.8 557,315 - ABZR87_RS02620 0.65 -1.6 557,315 - ABZR87_RS02620 0.65 -1.3 557,315 - ABZR87_RS02620 0.65 -0.1 557,315 - ABZR87_RS02620 0.65 -0.6 557,315 - ABZR87_RS02620 0.65 -2.3 557,520 - ABZR87_RS02620 0.85 -0.6 557,645 + +0.7 557,645 + +0.7 557,649 + +2.1 557,650 - -0.8 557,650 - -0.6 557,660 + -0.5 557,717 + +2.0 557,717 + +0.0 557,718 - -0.1 557,764 + +0.5 557,764 + +0.2 557,773 + +0.8 557,773 + -0.7 557,773 + +1.1 557,773 + -1.6 557,774 - -0.7 557,774 - +0.9 557,805 + +0.8 557,925 + -1.3 557,925 + -0.5 557,926 - -2.4 557,926 - -0.9 557,926 - +0.8 557,932 - -1.3 557,982 + -0.2 557,983 - +0.9 557,983 - -0.4 557,983 - -0.8 558,045 + +6.4 558,045 + -0.4 558,045 + -0.4 558,045 + -0.6 558,045 + -0.1 558,045 + +0.3 558,046 - +0.4 558,046 - +1.3 558,046 - -2.1 558,046 - -0.4 558,055 + +0.9 558,055 + +0.1 558,055 + -1.6 558,055 + -0.2 558,056 - -0.2 558,056 - -0.8 558,056 - -1.0 558,056 - -1.2 558,056 - +0.2 558,092 + -0.5 558,092 + -1.1 558,092 + -0.8 558,092 + -0.1 558,092 + +0.1 558,092 + -2.5 558,092 + +1.2 558,093 - -0.1 558,093 - +1.6 558,093 - -0.1 558,094 + +1.7 558,135 + -0.3 558,135 + +0.2
Or see this region's nucleotide sequence