Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02505

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS02500 and ABZR87_RS02505 overlap by 4 nucleotidesABZR87_RS02505 and ABZR87_RS02510 are separated by 19 nucleotides ABZR87_RS02500: ABZR87_RS02500 - histidinol dehydrogenase, at 529,891 to 531,219 _RS02500 ABZR87_RS02505: ABZR87_RS02505 - ATP phosphoribosyltransferase, at 531,216 to 531,905 _RS02505 ABZR87_RS02510: ABZR87_RS02510 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 531,925 to 533,190 _RS02510 Position (kb) 531 532Strain fitness (log2 ratio) -1 0 1 2 3 4at 531.517 kb on + strand, within ABZR87_RS02505at 531.566 kb on - strand, within ABZR87_RS02505at 531.921 kb on + strandat 531.922 kb on - strandat 531.922 kb on - strandat 531.922 kb on - strandat 531.926 kb on + strandat 531.926 kb on + strandat 531.927 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
remove
531,517 + ABZR87_RS02505 0.44 +4.1
531,566 - ABZR87_RS02505 0.51 +4.1
531,921 + +0.5
531,922 - +2.7
531,922 - -1.2
531,922 - +1.5
531,926 + +4.1
531,926 + +2.5
531,927 - +0.7

Or see this region's nucleotide sequence