Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01915

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01910 and ABZR87_RS01915 are separated by 391 nucleotidesABZR87_RS01915 and ABZR87_RS01920 are separated by 140 nucleotides ABZR87_RS01910: ABZR87_RS01910 - peroxiredoxin, at 405,180 to 405,680 _RS01910 ABZR87_RS01915: ABZR87_RS01915 - cell division protein FtsZ, at 406,072 to 407,271 _RS01915 ABZR87_RS01920: ABZR87_RS01920 - cell division protein FtsA, at 407,412 to 408,644 _RS01920 Position (kb) 406 407 408Strain fitness (log2 ratio) -2 -1 0 1 2 3at 405.084 kb on + strandat 405.084 kb on + strandat 405.084 kb on + strandat 405.084 kb on + strandat 405.084 kb on + strandat 405.084 kb on + strandat 405.085 kb on - strandat 405.146 kb on + strandat 405.147 kb on - strandat 405.253 kb on - strand, within ABZR87_RS01910at 405.281 kb on - strand, within ABZR87_RS01910at 405.622 kb on + strand, within ABZR87_RS01910at 405.717 kb on + strandat 405.717 kb on + strandat 405.717 kb on + strandat 405.717 kb on + strandat 405.717 kb on + strandat 405.717 kb on + strandat 405.717 kb on + strandat 405.717 kb on + strandat 405.717 kb on + strandat 405.718 kb on - strandat 405.718 kb on - strandat 405.718 kb on - strandat 405.718 kb on - strandat 405.718 kb on - strandat 405.718 kb on - strandat 405.718 kb on - strandat 405.718 kb on - strandat 405.718 kb on - strandat 405.718 kb on - strandat 405.718 kb on - strandat 405.751 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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405,084 + +1.0
405,084 + +1.8
405,084 + -0.6
405,084 + -1.8
405,084 + -0.9
405,084 + -0.7
405,085 - -0.9
405,146 + -0.3
405,147 - -1.0
405,253 - ABZR87_RS01910 0.15 -0.2
405,281 - ABZR87_RS01910 0.20 +2.7
405,622 + ABZR87_RS01910 0.88 -1.1
405,717 + -1.7
405,717 + +1.2
405,717 + -0.2
405,717 + +0.2
405,717 + -0.6
405,717 + -1.2
405,717 + +0.5
405,717 + -0.0
405,717 + +0.3
405,718 - -1.2
405,718 - +1.4
405,718 - -0.7
405,718 - +0.6
405,718 - +2.9
405,718 - -1.2
405,718 - +0.8
405,718 - +0.3
405,718 - -0.3
405,718 - -0.5
405,718 - +0.6
405,751 - +0.1

Or see this region's nucleotide sequence