Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01565 and ABZR87_RS01570 are separated by 161 nucleotides ABZR87_RS01570 and ABZR87_RS01575 overlap by 4 nucleotides ABZR87_RS01575 and ABZR87_RS01580 are separated by 32 nucleotides
ABZR87_RS01565: ABZR87_RS01565 - NADP-dependent malic enzyme, at 329,286 to 331,631
_RS01565
ABZR87_RS01570: ABZR87_RS01570 - thiamine-phosphate kinase, at 331,793 to 332,878
_RS01570
ABZR87_RS01575: ABZR87_RS01575 - phosphatidylglycerophosphatase A, at 332,875 to 333,453
_RS01575
ABZR87_RS01580: ABZR87_RS01580 - CinA family protein, at 333,486 to 333,986
_RS01580
Position (kb) 331
332
333 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 330.827 kb on + strand, within ABZR87_RS01565 at 330.827 kb on + strand, within ABZR87_RS01565 at 330.828 kb on - strand, within ABZR87_RS01565 at 330.828 kb on - strand, within ABZR87_RS01565 at 330.828 kb on - strand, within ABZR87_RS01565 at 330.828 kb on - strand, within ABZR87_RS01565 at 330.889 kb on - strand, within ABZR87_RS01565 at 330.892 kb on + strand, within ABZR87_RS01565 at 330.892 kb on + strand, within ABZR87_RS01565 at 330.893 kb on - strand, within ABZR87_RS01565 at 331.073 kb on + strand, within ABZR87_RS01565 at 331.390 kb on + strand, within ABZR87_RS01565 at 331.390 kb on + strand, within ABZR87_RS01565 at 331.390 kb on + strand, within ABZR87_RS01565 at 331.391 kb on - strand, within ABZR87_RS01565 at 331.454 kb on - strand at 331.616 kb on + strand at 331.616 kb on + strand at 331.643 kb on - strand at 331.643 kb on - strand at 331.717 kb on + strand at 331.717 kb on + strand at 331.717 kb on + strand at 331.717 kb on + strand at 331.718 kb on - strand at 331.718 kb on - strand at 331.747 kb on - strand at 331.749 kb on - strand at 331.792 kb on + strand at 331.792 kb on + strand at 331.792 kb on + strand at 331.792 kb on + strand at 331.792 kb on + strand at 331.792 kb on + strand at 331.793 kb on - strand at 331.806 kb on - strand at 331.810 kb on + strand at 331.810 kb on + strand at 331.811 kb on - strand at 331.851 kb on - strand at 333.480 kb on - strand at 333.480 kb on - strand at 333.613 kb on + strand, within ABZR87_RS01580 at 333.614 kb on - strand, within ABZR87_RS01580 at 333.614 kb on - strand, within ABZR87_RS01580 at 333.794 kb on + strand, within ABZR87_RS01580
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 330,827 + ABZR87_RS01565 0.66 -0.5 330,827 + ABZR87_RS01565 0.66 +1.5 330,828 - ABZR87_RS01565 0.66 -0.0 330,828 - ABZR87_RS01565 0.66 +0.8 330,828 - ABZR87_RS01565 0.66 -0.5 330,828 - ABZR87_RS01565 0.66 -1.6 330,889 - ABZR87_RS01565 0.68 -0.3 330,892 + ABZR87_RS01565 0.68 +1.0 330,892 + ABZR87_RS01565 0.68 -0.8 330,893 - ABZR87_RS01565 0.68 -0.3 331,073 + ABZR87_RS01565 0.76 -0.1 331,390 + ABZR87_RS01565 0.90 -0.6 331,390 + ABZR87_RS01565 0.90 +0.4 331,390 + ABZR87_RS01565 0.90 +1.2 331,391 - ABZR87_RS01565 0.90 -0.3 331,454 - -0.8 331,616 + +0.2 331,616 + +1.5 331,643 - -1.2 331,643 - -0.2 331,717 + -0.5 331,717 + +0.4 331,717 + -1.3 331,717 + +1.7 331,718 - +0.4 331,718 - -0.4 331,747 - -2.0 331,749 - -0.2 331,792 + -0.9 331,792 + +0.8 331,792 + -0.0 331,792 + -0.5 331,792 + -0.7 331,792 + -1.4 331,793 - +0.8 331,806 - +0.8 331,810 + +1.3 331,810 + -1.2 331,811 - +0.3 331,851 - -1.3 333,480 - +2.0 333,480 - -0.4 333,613 + ABZR87_RS01580 0.25 +0.9 333,614 - ABZR87_RS01580 0.26 +1.6 333,614 - ABZR87_RS01580 0.26 +1.5 333,794 + ABZR87_RS01580 0.61 +10.8
Or see this region's nucleotide sequence