Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01260 and ABZR87_RS01265 are separated by 157 nucleotides ABZR87_RS01265 and ABZR87_RS01270 are separated by 17 nucleotides
ABZR87_RS01260: ABZR87_RS01260 - metallophosphoesterase, at 261,114 to 262,280
_RS01260
ABZR87_RS01265: ABZR87_RS01265 - sensor domain-containing diguanylate cyclase, at 262,438 to 263,457
_RS01265
ABZR87_RS01270: ABZR87_RS01270 - ATP-dependent DNA helicase RecG, at 263,475 to 265,622
_RS01270
Position (kb) 262
263
264 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 261.453 kb on + strand, within ABZR87_RS01260 at 261.454 kb on - strand, within ABZR87_RS01260 at 261.513 kb on + strand, within ABZR87_RS01260 at 261.514 kb on - strand, within ABZR87_RS01260 at 261.514 kb on - strand, within ABZR87_RS01260 at 261.514 kb on - strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.518 kb on - strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.810 kb on + strand, within ABZR87_RS01260 at 261.810 kb on + strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.813 kb on + strand, within ABZR87_RS01260 at 261.813 kb on + strand, within ABZR87_RS01260 at 262.185 kb on + strand at 262.185 kb on + strand at 262.185 kb on + strand at 262.186 kb on - strand at 262.186 kb on - strand at 262.186 kb on - strand at 262.186 kb on - strand at 262.206 kb on + strand at 262.207 kb on - strand at 262.226 kb on - strand at 262.252 kb on + strand at 262.252 kb on + strand at 262.252 kb on + strand at 262.253 kb on - strand at 262.261 kb on + strand at 262.262 kb on - strand at 262.333 kb on - strand at 262.333 kb on - strand at 262.333 kb on - strand at 262.376 kb on - strand at 262.376 kb on - strand at 262.376 kb on - strand at 262.376 kb on - strand at 262.624 kb on + strand, within ABZR87_RS01265 at 262.624 kb on + strand, within ABZR87_RS01265 at 262.624 kb on + strand, within ABZR87_RS01265 at 262.625 kb on - strand, within ABZR87_RS01265 at 262.625 kb on - strand, within ABZR87_RS01265 at 262.625 kb on - strand, within ABZR87_RS01265 at 262.960 kb on + strand, within ABZR87_RS01265 at 262.960 kb on + strand, within ABZR87_RS01265 at 262.960 kb on + strand, within ABZR87_RS01265 at 262.961 kb on - strand, within ABZR87_RS01265 at 262.961 kb on - strand, within ABZR87_RS01265 at 262.961 kb on - strand, within ABZR87_RS01265 at 262.961 kb on - strand, within ABZR87_RS01265 at 263.014 kb on + strand, within ABZR87_RS01265 at 263.014 kb on + strand, within ABZR87_RS01265 at 263.014 kb on + strand, within ABZR87_RS01265 at 263.014 kb on + strand, within ABZR87_RS01265 at 263.014 kb on + strand, within ABZR87_RS01265 at 263.015 kb on - strand, within ABZR87_RS01265 at 263.015 kb on - strand, within ABZR87_RS01265 at 263.015 kb on - strand, within ABZR87_RS01265 at 263.015 kb on - strand, within ABZR87_RS01265 at 263.301 kb on + strand, within ABZR87_RS01265 at 263.302 kb on + strand, within ABZR87_RS01265 at 263.302 kb on + strand, within ABZR87_RS01265 at 263.302 kb on + strand, within ABZR87_RS01265 at 263.302 kb on + strand, within ABZR87_RS01265 at 263.302 kb on + strand, within ABZR87_RS01265 at 263.302 kb on + strand, within ABZR87_RS01265 at 263.302 kb on + strand, within ABZR87_RS01265 at 263.302 kb on + strand, within ABZR87_RS01265 at 263.303 kb on - strand, within ABZR87_RS01265 at 263.303 kb on - strand, within ABZR87_RS01265 at 263.303 kb on - strand, within ABZR87_RS01265 at 263.303 kb on - strand, within ABZR87_RS01265 at 263.303 kb on - strand, within ABZR87_RS01265 at 263.303 kb on - strand, within ABZR87_RS01265 at 263.303 kb on - strand, within ABZR87_RS01265 at 263.303 kb on - strand, within ABZR87_RS01265 at 263.303 kb on - strand, within ABZR87_RS01265 at 263.303 kb on - strand, within ABZR87_RS01265 at 263.324 kb on + strand, within ABZR87_RS01265 at 263.324 kb on + strand, within ABZR87_RS01265 at 263.325 kb on - strand, within ABZR87_RS01265 at 263.413 kb on + strand at 263.413 kb on + strand at 263.413 kb on + strand at 263.413 kb on + strand at 263.413 kb on + strand at 263.414 kb on - strand at 263.414 kb on - strand at 263.414 kb on - strand at 263.414 kb on - strand at 263.414 kb on - strand at 263.414 kb on - strand at 263.414 kb on - strand at 263.414 kb on - strand at 263.414 kb on - strand at 263.414 kb on - strand at 263.441 kb on + strand at 263.441 kb on + strand at 263.441 kb on + strand at 263.442 kb on - strand at 263.442 kb on - strand at 263.476 kb on + strand at 263.488 kb on + strand at 263.489 kb on - strand at 263.489 kb on - strand at 263.764 kb on + strand, within ABZR87_RS01270 at 263.764 kb on + strand, within ABZR87_RS01270 at 263.764 kb on + strand, within ABZR87_RS01270 at 263.764 kb on + strand, within ABZR87_RS01270 at 263.765 kb on - strand, within ABZR87_RS01270 at 263.765 kb on - strand, within ABZR87_RS01270 at 263.765 kb on - strand, within ABZR87_RS01270 at 263.909 kb on + strand, within ABZR87_RS01270 at 263.910 kb on - strand, within ABZR87_RS01270 at 263.997 kb on + strand, within ABZR87_RS01270 at 263.998 kb on - strand, within ABZR87_RS01270 at 263.998 kb on - strand, within ABZR87_RS01270 at 264.098 kb on - strand, within ABZR87_RS01270 at 264.127 kb on + strand, within ABZR87_RS01270 at 264.127 kb on + strand, within ABZR87_RS01270 at 264.127 kb on + strand, within ABZR87_RS01270 at 264.127 kb on + strand, within ABZR87_RS01270 at 264.128 kb on - strand, within ABZR87_RS01270 at 264.235 kb on + strand, within ABZR87_RS01270 at 264.235 kb on + strand, within ABZR87_RS01270 at 264.235 kb on + strand, within ABZR87_RS01270 at 264.236 kb on - strand, within ABZR87_RS01270 at 264.238 kb on + strand, within ABZR87_RS01270 at 264.238 kb on + strand, within ABZR87_RS01270 at 264.238 kb on + strand, within ABZR87_RS01270 at 264.238 kb on + strand, within ABZR87_RS01270 at 264.238 kb on + strand, within ABZR87_RS01270 at 264.238 kb on + strand, within ABZR87_RS01270 at 264.238 kb on + strand, within ABZR87_RS01270 at 264.238 kb on + strand, within ABZR87_RS01270 at 264.239 kb on - strand, within ABZR87_RS01270 at 264.239 kb on - strand, within ABZR87_RS01270 at 264.239 kb on - strand, within ABZR87_RS01270 at 264.239 kb on - strand, within ABZR87_RS01270 at 264.239 kb on - strand, within ABZR87_RS01270
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 261,453 + ABZR87_RS01260 0.29 +0.3 261,454 - ABZR87_RS01260 0.29 -1.8 261,513 + ABZR87_RS01260 0.34 -0.0 261,514 - ABZR87_RS01260 0.34 -0.3 261,514 - ABZR87_RS01260 0.34 -0.9 261,514 - ABZR87_RS01260 0.34 +0.2 261,515 + ABZR87_RS01260 0.34 -0.8 261,515 + ABZR87_RS01260 0.34 +1.1 261,515 + ABZR87_RS01260 0.34 -0.1 261,515 + ABZR87_RS01260 0.34 +1.8 261,516 - ABZR87_RS01260 0.34 +0.0 261,516 - ABZR87_RS01260 0.34 -0.4 261,516 - ABZR87_RS01260 0.34 +1.5 261,516 - ABZR87_RS01260 0.34 -0.3 261,516 - ABZR87_RS01260 0.34 -1.1 261,518 - ABZR87_RS01260 0.35 -0.6 261,645 + ABZR87_RS01260 0.46 -0.6 261,645 + ABZR87_RS01260 0.46 +0.1 261,645 + ABZR87_RS01260 0.46 -3.1 261,645 + ABZR87_RS01260 0.46 -0.8 261,645 + ABZR87_RS01260 0.46 -2.1 261,645 + ABZR87_RS01260 0.46 +2.5 261,645 + ABZR87_RS01260 0.46 -0.3 261,646 - ABZR87_RS01260 0.46 -0.4 261,646 - ABZR87_RS01260 0.46 +1.8 261,646 - ABZR87_RS01260 0.46 -1.2 261,646 - ABZR87_RS01260 0.46 +0.5 261,646 - ABZR87_RS01260 0.46 +0.2 261,646 - ABZR87_RS01260 0.46 +1.0 261,646 - ABZR87_RS01260 0.46 +0.7 261,810 + ABZR87_RS01260 0.60 -0.9 261,810 + ABZR87_RS01260 0.60 -1.4 261,811 - ABZR87_RS01260 0.60 -0.4 261,811 - ABZR87_RS01260 0.60 +1.5 261,811 - ABZR87_RS01260 0.60 -0.2 261,811 - ABZR87_RS01260 0.60 -1.1 261,811 - ABZR87_RS01260 0.60 +0.7 261,813 + ABZR87_RS01260 0.60 +0.1 261,813 + ABZR87_RS01260 0.60 -0.5 262,185 + -0.8 262,185 + +0.2 262,185 + -1.8 262,186 - +1.7 262,186 - -0.6 262,186 - +0.5 262,186 - -0.7 262,206 + -1.2 262,207 - -1.4 262,226 - -1.8 262,252 + -1.9 262,252 + +1.8 262,252 + -1.8 262,253 - -1.6 262,261 + -0.3 262,262 - +0.0 262,333 - -0.7 262,333 - +0.0 262,333 - +0.7 262,376 - +0.2 262,376 - -1.0 262,376 - +1.1 262,376 - -0.2 262,624 + ABZR87_RS01265 0.18 +3.0 262,624 + ABZR87_RS01265 0.18 +0.6 262,624 + ABZR87_RS01265 0.18 -0.1 262,625 - ABZR87_RS01265 0.18 +1.5 262,625 - ABZR87_RS01265 0.18 +2.4 262,625 - ABZR87_RS01265 0.18 +1.4 262,960 + ABZR87_RS01265 0.51 +0.9 262,960 + ABZR87_RS01265 0.51 +0.5 262,960 + ABZR87_RS01265 0.51 +1.3 262,961 - ABZR87_RS01265 0.51 -0.2 262,961 - ABZR87_RS01265 0.51 +2.6 262,961 - ABZR87_RS01265 0.51 -0.7 262,961 - ABZR87_RS01265 0.51 +10.1 263,014 + ABZR87_RS01265 0.56 +0.9 263,014 + ABZR87_RS01265 0.56 +0.9 263,014 + ABZR87_RS01265 0.56 +1.1 263,014 + ABZR87_RS01265 0.56 +0.3 263,014 + ABZR87_RS01265 0.56 -1.3 263,015 - ABZR87_RS01265 0.57 -0.7 263,015 - ABZR87_RS01265 0.57 +1.8 263,015 - ABZR87_RS01265 0.57 +0.8 263,015 - ABZR87_RS01265 0.57 +0.0 263,301 + ABZR87_RS01265 0.85 +1.9 263,302 + ABZR87_RS01265 0.85 +1.2 263,302 + ABZR87_RS01265 0.85 +1.4 263,302 + ABZR87_RS01265 0.85 -0.7 263,302 + ABZR87_RS01265 0.85 +1.5 263,302 + ABZR87_RS01265 0.85 +0.5 263,302 + ABZR87_RS01265 0.85 +0.1 263,302 + ABZR87_RS01265 0.85 +0.9 263,302 + ABZR87_RS01265 0.85 +0.1 263,303 - ABZR87_RS01265 0.85 +0.0 263,303 - ABZR87_RS01265 0.85 +1.2 263,303 - ABZR87_RS01265 0.85 -0.3 263,303 - ABZR87_RS01265 0.85 -1.0 263,303 - ABZR87_RS01265 0.85 +0.8 263,303 - ABZR87_RS01265 0.85 +1.7 263,303 - ABZR87_RS01265 0.85 +0.1 263,303 - ABZR87_RS01265 0.85 +0.5 263,303 - ABZR87_RS01265 0.85 +0.6 263,303 - ABZR87_RS01265 0.85 +1.0 263,324 + ABZR87_RS01265 0.87 -0.1 263,324 + ABZR87_RS01265 0.87 +5.8 263,325 - ABZR87_RS01265 0.87 -0.1 263,413 + +0.0 263,413 + +0.5 263,413 + +0.9 263,413 + -0.3 263,413 + +0.5 263,414 - +0.3 263,414 - +1.1 263,414 - +0.8 263,414 - +1.8 263,414 - -0.0 263,414 - +0.9 263,414 - +0.5 263,414 - +0.9 263,414 - -0.6 263,414 - +2.2 263,441 + +2.7 263,441 + -0.3 263,441 + +0.2 263,442 - +1.6 263,442 - +0.8 263,476 + +1.9 263,488 + -1.9 263,489 - +1.4 263,489 - +0.4 263,764 + ABZR87_RS01270 0.13 +0.8 263,764 + ABZR87_RS01270 0.13 -1.1 263,764 + ABZR87_RS01270 0.13 +0.8 263,764 + ABZR87_RS01270 0.13 +1.1 263,765 - ABZR87_RS01270 0.14 +0.7 263,765 - ABZR87_RS01270 0.14 -0.5 263,765 - ABZR87_RS01270 0.14 -0.9 263,909 + ABZR87_RS01270 0.20 +2.3 263,910 - ABZR87_RS01270 0.20 -0.9 263,997 + ABZR87_RS01270 0.24 -0.4 263,998 - ABZR87_RS01270 0.24 -0.8 263,998 - ABZR87_RS01270 0.24 +2.0 264,098 - ABZR87_RS01270 0.29 -1.8 264,127 + ABZR87_RS01270 0.30 +0.9 264,127 + ABZR87_RS01270 0.30 +1.1 264,127 + ABZR87_RS01270 0.30 -0.5 264,127 + ABZR87_RS01270 0.30 +1.1 264,128 - ABZR87_RS01270 0.30 -0.8 264,235 + ABZR87_RS01270 0.35 +0.8 264,235 + ABZR87_RS01270 0.35 -1.0 264,235 + ABZR87_RS01270 0.35 +0.0 264,236 - ABZR87_RS01270 0.35 -1.4 264,238 + ABZR87_RS01270 0.36 +0.4 264,238 + ABZR87_RS01270 0.36 +0.0 264,238 + ABZR87_RS01270 0.36 +2.1 264,238 + ABZR87_RS01270 0.36 +0.3 264,238 + ABZR87_RS01270 0.36 +2.5 264,238 + ABZR87_RS01270 0.36 -1.4 264,238 + ABZR87_RS01270 0.36 -0.4 264,238 + ABZR87_RS01270 0.36 +0.9 264,239 - ABZR87_RS01270 0.36 -0.1 264,239 - ABZR87_RS01270 0.36 -0.7 264,239 - ABZR87_RS01270 0.36 +1.5 264,239 - ABZR87_RS01270 0.36 +0.3 264,239 - ABZR87_RS01270 0.36 +1.8
Or see this region's nucleotide sequence