Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00950 and ABZR87_RS00955 are separated by 11 nucleotides ABZR87_RS00955 and ABZR87_RS00960 overlap by 4 nucleotides ABZR87_RS00960 and ABZR87_RS00965 overlap by 57 nucleotides
ABZR87_RS00950: ABZR87_RS00950 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 188,703 to 189,521
_RS00950
ABZR87_RS00955: ABZR87_RS00955 - ABC transporter permease, at 189,533 to 190,240
_RS00955
ABZR87_RS00960: ABZR87_RS00960 - ATP-binding cassette domain-containing protein, at 190,237 to 190,935
_RS00960
ABZR87_RS00965: ABZR87_RS00965 - bifunctional anthranilate synthase component I family protein/class IV aminotransferase, at 190,879 to 192,777
_RS00965
Position (kb) 190
191 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 189.674 kb on + strand, within ABZR87_RS00955 at 189.674 kb on + strand, within ABZR87_RS00955 at 189.674 kb on + strand, within ABZR87_RS00955 at 189.675 kb on - strand, within ABZR87_RS00955 at 189.675 kb on - strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.774 kb on - strand, within ABZR87_RS00955 at 189.774 kb on - strand, within ABZR87_RS00955 at 189.774 kb on - strand, within ABZR87_RS00955 at 190.220 kb on + strand at 190.220 kb on + strand at 190.221 kb on - strand at 190.221 kb on - strand at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.513 kb on + strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.532 kb on + strand, within ABZR87_RS00960 at 190.550 kb on - strand, within ABZR87_RS00960 at 190.880 kb on + strand at 190.880 kb on + strand at 190.880 kb on + strand at 190.881 kb on - strand at 190.881 kb on - strand at 190.881 kb on - strand at 190.881 kb on - strand at 190.934 kb on - strand at 190.945 kb on + strand at 190.946 kb on - strand at 190.946 kb on - strand at 190.946 kb on - strand at 191.210 kb on + strand, within ABZR87_RS00965 at 191.210 kb on + strand, within ABZR87_RS00965 at 191.210 kb on + strand, within ABZR87_RS00965 at 191.210 kb on + strand, within ABZR87_RS00965 at 191.211 kb on - strand, within ABZR87_RS00965 at 191.211 kb on - strand, within ABZR87_RS00965 at 191.211 kb on - strand, within ABZR87_RS00965 at 191.211 kb on - strand, within ABZR87_RS00965 at 191.335 kb on + strand, within ABZR87_RS00965 at 191.365 kb on + strand, within ABZR87_RS00965 at 191.366 kb on - strand, within ABZR87_RS00965 at 191.598 kb on - strand, within ABZR87_RS00965 at 191.598 kb on - strand, within ABZR87_RS00965 at 191.774 kb on + strand, within ABZR87_RS00965 at 191.774 kb on + strand, within ABZR87_RS00965 at 191.775 kb on - strand, within ABZR87_RS00965 at 191.775 kb on - strand, within ABZR87_RS00965
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 189,674 + ABZR87_RS00955 0.20 +1.3 189,674 + ABZR87_RS00955 0.20 -2.0 189,674 + ABZR87_RS00955 0.20 +0.1 189,675 - ABZR87_RS00955 0.20 -0.2 189,675 - ABZR87_RS00955 0.20 -0.7 189,773 + ABZR87_RS00955 0.34 -1.4 189,773 + ABZR87_RS00955 0.34 -0.3 189,773 + ABZR87_RS00955 0.34 +2.3 189,773 + ABZR87_RS00955 0.34 -1.2 189,773 + ABZR87_RS00955 0.34 +0.7 189,773 + ABZR87_RS00955 0.34 +0.3 189,773 + ABZR87_RS00955 0.34 -1.3 189,774 - ABZR87_RS00955 0.34 -1.8 189,774 - ABZR87_RS00955 0.34 +0.0 189,774 - ABZR87_RS00955 0.34 -0.9 190,220 + -2.0 190,220 + +0.2 190,221 - -0.6 190,221 - -1.4 190,495 + ABZR87_RS00960 0.37 +0.8 190,495 + ABZR87_RS00960 0.37 +0.7 190,495 + ABZR87_RS00960 0.37 +1.1 190,495 + ABZR87_RS00960 0.37 +0.8 190,495 + ABZR87_RS00960 0.37 +0.4 190,495 + ABZR87_RS00960 0.37 +0.2 190,495 + ABZR87_RS00960 0.37 -2.7 190,495 + ABZR87_RS00960 0.37 -1.7 190,495 + ABZR87_RS00960 0.37 -1.7 190,495 + ABZR87_RS00960 0.37 +1.5 190,495 + ABZR87_RS00960 0.37 +1.3 190,496 - ABZR87_RS00960 0.37 -0.2 190,496 - ABZR87_RS00960 0.37 +0.5 190,496 - ABZR87_RS00960 0.37 +0.1 190,496 - ABZR87_RS00960 0.37 -0.4 190,496 - ABZR87_RS00960 0.37 +1.9 190,496 - ABZR87_RS00960 0.37 -0.6 190,513 + ABZR87_RS00960 0.39 -1.4 190,514 - ABZR87_RS00960 0.40 -1.2 190,514 - ABZR87_RS00960 0.40 +1.8 190,514 - ABZR87_RS00960 0.40 -1.5 190,514 - ABZR87_RS00960 0.40 -2.3 190,532 + ABZR87_RS00960 0.42 +1.4 190,550 - ABZR87_RS00960 0.45 -1.5 190,880 + -1.8 190,880 + +0.1 190,880 + +1.5 190,881 - -0.0 190,881 - +0.6 190,881 - +0.0 190,881 - +0.8 190,934 - -0.1 190,945 + -0.2 190,946 - +1.3 190,946 - -0.3 190,946 - -0.1 191,210 + ABZR87_RS00965 0.17 +1.1 191,210 + ABZR87_RS00965 0.17 -0.1 191,210 + ABZR87_RS00965 0.17 +2.6 191,210 + ABZR87_RS00965 0.17 -0.0 191,211 - ABZR87_RS00965 0.17 +0.7 191,211 - ABZR87_RS00965 0.17 +1.0 191,211 - ABZR87_RS00965 0.17 +0.4 191,211 - ABZR87_RS00965 0.17 +0.1 191,335 + ABZR87_RS00965 0.24 +1.8 191,365 + ABZR87_RS00965 0.26 +2.9 191,366 - ABZR87_RS00965 0.26 -0.5 191,598 - ABZR87_RS00965 0.38 +0.8 191,598 - ABZR87_RS00965 0.38 -0.1 191,774 + ABZR87_RS00965 0.47 -0.6 191,774 + ABZR87_RS00965 0.47 +0.2 191,775 - ABZR87_RS00965 0.47 +0.7 191,775 - ABZR87_RS00965 0.47 -0.4
Or see this region's nucleotide sequence