Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00390 and ABZR87_RS00395 are separated by 220 nucleotides ABZR87_RS00395 and ABZR87_RS00400 are separated by 109 nucleotides
ABZR87_RS00390: ABZR87_RS00390 - hybrid sensor histidine kinase/response regulator, at 79,269 to 81,101
_RS00390
ABZR87_RS00395: ABZR87_RS00395 - bifunctional riboflavin kinase/FAD synthetase, at 81,322 to 82,320
_RS00395
ABZR87_RS00400: ABZR87_RS00400 - isoleucine--tRNA ligase, at 82,430 to 85,309
_RS00400
Position (kb) 81
82
83 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 80.323 kb on - strand, within ABZR87_RS00390 at 80.560 kb on + strand, within ABZR87_RS00390 at 80.560 kb on + strand, within ABZR87_RS00390 at 80.561 kb on - strand, within ABZR87_RS00390 at 80.737 kb on + strand, within ABZR87_RS00390 at 80.737 kb on + strand, within ABZR87_RS00390 at 80.737 kb on + strand, within ABZR87_RS00390 at 80.737 kb on + strand, within ABZR87_RS00390 at 80.737 kb on + strand, within ABZR87_RS00390 at 80.738 kb on - strand, within ABZR87_RS00390 at 80.738 kb on - strand, within ABZR87_RS00390 at 80.738 kb on - strand, within ABZR87_RS00390 at 80.738 kb on - strand, within ABZR87_RS00390 at 80.860 kb on + strand, within ABZR87_RS00390 at 80.861 kb on - strand, within ABZR87_RS00390 at 81.230 kb on + strand at 81.231 kb on - strand at 81.231 kb on - strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.233 kb on - strand at 81.233 kb on - strand at 81.233 kb on - strand at 81.233 kb on - strand at 81.233 kb on - strand at 81.233 kb on - strand at 81.233 kb on - strand at 81.233 kb on - strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.280 kb on + strand at 82.318 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 80,323 - ABZR87_RS00390 0.58 +1.4 80,560 + ABZR87_RS00390 0.70 +2.3 80,560 + ABZR87_RS00390 0.70 +2.9 80,561 - ABZR87_RS00390 0.70 +5.3 80,737 + ABZR87_RS00390 0.80 +3.5 80,737 + ABZR87_RS00390 0.80 +3.4 80,737 + ABZR87_RS00390 0.80 +5.5 80,737 + ABZR87_RS00390 0.80 +2.9 80,737 + ABZR87_RS00390 0.80 +1.2 80,738 - ABZR87_RS00390 0.80 +1.9 80,738 - ABZR87_RS00390 0.80 +1.4 80,738 - ABZR87_RS00390 0.80 +0.1 80,738 - ABZR87_RS00390 0.80 +2.2 80,860 + ABZR87_RS00390 0.87 +0.1 80,861 - ABZR87_RS00390 0.87 +3.0 81,230 + -0.8 81,231 - -0.5 81,231 - -1.2 81,232 + -0.8 81,232 + +3.4 81,232 + +0.5 81,232 + +1.4 81,232 + -0.5 81,232 + +1.4 81,232 + -1.1 81,232 + +0.5 81,232 + -0.1 81,232 + +0.6 81,233 - +0.9 81,233 - -1.0 81,233 - -1.5 81,233 - +2.1 81,233 - +1.5 81,233 - -0.1 81,233 - -0.9 81,233 - +2.7 81,234 + +0.4 81,234 + +2.4 81,234 + -1.8 81,234 + +3.1 81,234 + -0.1 81,234 + -0.1 81,234 + +0.4 81,234 + +1.0 81,280 + -1.1 82,318 + -0.7
Or see this region's nucleotide sequence