Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37350

Experiment: R2A with nitrate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS37340 and RR42_RS37345 are separated by 95 nucleotidesRR42_RS37345 and RR42_RS37350 overlap by 4 nucleotidesRR42_RS37350 and RR42_RS37355 are separated by 63 nucleotides RR42_RS37340: RR42_RS37340 - cellulose synthase, at 3,856,068 to 3,858,230 _RS37340 RR42_RS37345: RR42_RS37345 - chromosome partitioning protein ParA, at 3,858,326 to 3,859,099 _RS37345 RR42_RS37350: RR42_RS37350 - hypothetical protein, at 3,859,096 to 3,859,773 _RS37350 RR42_RS37355: RR42_RS37355 - cellulose synthase, at 3,859,837 to 3,860,292 _RS37355 Position (kb) 3859 3860Strain fitness (log2 ratio) -3 -2 -1 0 1at 3858.414 kb on + strand, within RR42_RS37345at 3858.414 kb on + strand, within RR42_RS37345at 3858.414 kb on + strand, within RR42_RS37345at 3858.415 kb on - strand, within RR42_RS37345at 3858.415 kb on - strand, within RR42_RS37345at 3858.415 kb on - strand, within RR42_RS37345at 3858.435 kb on + strand, within RR42_RS37345at 3858.436 kb on - strand, within RR42_RS37345at 3858.568 kb on + strand, within RR42_RS37345at 3858.568 kb on + strand, within RR42_RS37345at 3858.568 kb on + strand, within RR42_RS37345at 3858.568 kb on + strand, within RR42_RS37345at 3858.569 kb on - strand, within RR42_RS37345at 3858.569 kb on - strand, within RR42_RS37345at 3858.600 kb on + strand, within RR42_RS37345at 3858.601 kb on - strand, within RR42_RS37345at 3858.601 kb on - strand, within RR42_RS37345at 3858.705 kb on + strand, within RR42_RS37345at 3858.705 kb on + strand, within RR42_RS37345at 3858.705 kb on + strand, within RR42_RS37345at 3858.706 kb on - strand, within RR42_RS37345at 3858.706 kb on - strand, within RR42_RS37345at 3858.706 kb on - strand, within RR42_RS37345at 3858.706 kb on - strand, within RR42_RS37345at 3858.706 kb on - strand, within RR42_RS37345at 3858.727 kb on + strand, within RR42_RS37345at 3858.727 kb on + strand, within RR42_RS37345at 3858.882 kb on + strand, within RR42_RS37345at 3858.882 kb on + strand, within RR42_RS37345at 3858.882 kb on + strand, within RR42_RS37345at 3858.882 kb on + strand, within RR42_RS37345at 3858.882 kb on + strand, within RR42_RS37345at 3858.882 kb on + strand, within RR42_RS37345at 3858.882 kb on + strand, within RR42_RS37345at 3858.882 kb on + strandat 3858.882 kb on + strand, within RR42_RS37345at 3858.882 kb on + strand, within RR42_RS37345at 3858.882 kb on + strand, within RR42_RS37345at 3858.882 kb on + strand, within RR42_RS37345at 3858.882 kb on + strand, within RR42_RS37345at 3858.882 kb on + strand, within RR42_RS37345at 3858.882 kb on + strand, within RR42_RS37345at 3858.882 kb on + strand, within RR42_RS37345at 3858.883 kb on - strand, within RR42_RS37345at 3858.883 kb on - strand, within RR42_RS37345at 3858.883 kb on - strand, within RR42_RS37345at 3858.883 kb on - strand, within RR42_RS37345at 3858.883 kb on - strand, within RR42_RS37345at 3858.883 kb on - strand, within RR42_RS37345at 3858.883 kb on - strandat 3858.883 kb on - strand, within RR42_RS37345at 3859.002 kb on - strand, within RR42_RS37345at 3859.002 kb on - strand, within RR42_RS37345at 3859.117 kb on + strandat 3859.117 kb on + strandat 3859.117 kb on + strandat 3859.118 kb on - strandat 3859.118 kb on - strandat 3859.177 kb on + strand, within RR42_RS37350at 3859.177 kb on + strand, within RR42_RS37350at 3859.177 kb on + strand, within RR42_RS37350at 3859.177 kb on + strand, within RR42_RS37350at 3859.199 kb on - strand, within RR42_RS37350at 3859.625 kb on - strand, within RR42_RS37350at 3859.712 kb on + strandat 3859.712 kb on + strandat 3859.940 kb on + strand, within RR42_RS37355at 3859.940 kb on + strand, within RR42_RS37355at 3860.206 kb on + strand, within RR42_RS37355at 3860.206 kb on + strand, within RR42_RS37355at 3860.207 kb on - strand, within RR42_RS37355at 3860.207 kb on - strand, within RR42_RS37355at 3860.230 kb on + strandat 3860.230 kb on + strand, within RR42_RS37355at 3860.231 kb on - strand, within RR42_RS37355at 3860.231 kb on - strand, within RR42_RS37355at 3860.231 kb on - strand, within RR42_RS37355at 3860.231 kb on - strand, within RR42_RS37355at 3860.231 kb on - strand, within RR42_RS37355at 3860.270 kb on + strandat 3860.270 kb on + strandat 3860.271 kb on - strandat 3860.271 kb on - strandat 3860.271 kb on - strandat 3860.271 kb on - strandat 3860.308 kb on + strandat 3860.316 kb on + strandat 3860.316 kb on + strandat 3860.325 kb on + strandat 3860.326 kb on - strandat 3860.334 kb on + strandat 3860.335 kb on - strandat 3860.401 kb on + strandat 3860.401 kb on + strandat 3860.401 kb on + strandat 3860.401 kb on + strandat 3860.402 kb on - strandat 3860.402 kb on - strandat 3860.521 kb on + strandat 3860.521 kb on + strandat 3860.522 kb on - strandat 3860.558 kb on + strandat 3860.571 kb on + strandat 3860.571 kb on + strandat 3860.580 kb on + strandat 3860.580 kb on + strandat 3860.580 kb on + strandat 3860.581 kb on - strandat 3860.581 kb on - strandat 3860.581 kb on - strandat 3860.585 kb on + strandat 3860.593 kb on + strandat 3860.594 kb on - strandat 3860.594 kb on - strandat 3860.599 kb on - strandat 3860.599 kb on - strandat 3860.646 kb on + strandat 3860.646 kb on + strandat 3860.647 kb on - strandat 3860.667 kb on + strandat 3860.667 kb on + strandat 3860.667 kb on + strandat 3860.667 kb on + strandat 3860.667 kb on + strandat 3860.668 kb on - strandat 3860.688 kb on + strandat 3860.714 kb on + strandat 3860.754 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 150 mM
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3,858,414 + RR42_RS37345 0.11 +0.5
3,858,414 + RR42_RS37345 0.11 +0.3
3,858,414 + RR42_RS37345 0.11 -0.1
3,858,415 - RR42_RS37345 0.11 +0.1
3,858,415 - RR42_RS37345 0.11 +1.0
3,858,415 - RR42_RS37345 0.11 +1.0
3,858,435 + RR42_RS37345 0.14 -0.4
3,858,436 - RR42_RS37345 0.14 +0.3
3,858,568 + RR42_RS37345 0.31 +0.5
3,858,568 + RR42_RS37345 0.31 +1.5
3,858,568 + RR42_RS37345 0.31 -0.1
3,858,568 + RR42_RS37345 0.31 +0.2
3,858,569 - RR42_RS37345 0.31 +0.5
3,858,569 - RR42_RS37345 0.31 +1.1
3,858,600 + RR42_RS37345 0.35 -0.2
3,858,601 - RR42_RS37345 0.36 +0.2
3,858,601 - RR42_RS37345 0.36 +0.5
3,858,705 + RR42_RS37345 0.49 +0.8
3,858,705 + RR42_RS37345 0.49 +1.0
3,858,705 + RR42_RS37345 0.49 +0.4
3,858,706 - RR42_RS37345 0.49 +0.2
3,858,706 - RR42_RS37345 0.49 +0.0
3,858,706 - RR42_RS37345 0.49 +0.2
3,858,706 - RR42_RS37345 0.49 +0.2
3,858,706 - RR42_RS37345 0.49 +0.8
3,858,727 + RR42_RS37345 0.52 -1.3
3,858,727 + RR42_RS37345 0.52 -0.2
3,858,882 + RR42_RS37345 0.72 +0.1
3,858,882 + RR42_RS37345 0.72 +0.0
3,858,882 + RR42_RS37345 0.72 +0.7
3,858,882 + RR42_RS37345 0.72 +0.3
3,858,882 + RR42_RS37345 0.72 +0.2
3,858,882 + RR42_RS37345 0.72 +1.4
3,858,882 + RR42_RS37345 0.72 +0.7
3,858,882 + +0.9
3,858,882 + RR42_RS37345 0.72 +0.2
3,858,882 + RR42_RS37345 0.72 +0.8
3,858,882 + RR42_RS37345 0.72 +1.1
3,858,882 + RR42_RS37345 0.72 -0.1
3,858,882 + RR42_RS37345 0.72 +0.1
3,858,882 + RR42_RS37345 0.72 +0.2
3,858,882 + RR42_RS37345 0.72 +0.2
3,858,882 + RR42_RS37345 0.72 -0.5
3,858,883 - RR42_RS37345 0.72 +1.0
3,858,883 - RR42_RS37345 0.72 +0.4
3,858,883 - RR42_RS37345 0.72 +0.4
3,858,883 - RR42_RS37345 0.72 -0.0
3,858,883 - RR42_RS37345 0.72 +0.8
3,858,883 - RR42_RS37345 0.72 +1.1
3,858,883 - +0.3
3,858,883 - RR42_RS37345 0.72 +0.6
3,859,002 - RR42_RS37345 0.87 +0.3
3,859,002 - RR42_RS37345 0.87 +0.6
3,859,117 + +0.6
3,859,117 + +0.6
3,859,117 + +1.0
3,859,118 - -0.4
3,859,118 - -0.1
3,859,177 + RR42_RS37350 0.12 -0.2
3,859,177 + RR42_RS37350 0.12 +0.3
3,859,177 + RR42_RS37350 0.12 +1.0
3,859,177 + RR42_RS37350 0.12 +0.3
3,859,199 - RR42_RS37350 0.15 +0.0
3,859,625 - RR42_RS37350 0.78 +0.5
3,859,712 + +0.6
3,859,712 + -0.2
3,859,940 + RR42_RS37355 0.23 -0.6
3,859,940 + RR42_RS37355 0.23 +0.9
3,860,206 + RR42_RS37355 0.81 +0.6
3,860,206 + RR42_RS37355 0.81 +0.9
3,860,207 - RR42_RS37355 0.81 -0.1
3,860,207 - RR42_RS37355 0.81 +0.2
3,860,230 + +1.2
3,860,230 + RR42_RS37355 0.86 +0.1
3,860,231 - RR42_RS37355 0.86 +0.1
3,860,231 - RR42_RS37355 0.86 +0.4
3,860,231 - RR42_RS37355 0.86 +0.5
3,860,231 - RR42_RS37355 0.86 +0.8
3,860,231 - RR42_RS37355 0.86 +0.2
3,860,270 + -0.2
3,860,270 + +0.1
3,860,271 - -0.1
3,860,271 - -0.1
3,860,271 - -0.5
3,860,271 - +0.1
3,860,308 + +1.4
3,860,316 + +0.6
3,860,316 + +0.0
3,860,325 + +0.2
3,860,326 - +0.0
3,860,334 + -0.0
3,860,335 - +0.7
3,860,401 + +1.0
3,860,401 + -0.1
3,860,401 + +0.4
3,860,401 + -1.4
3,860,402 - -2.6
3,860,402 - -2.3
3,860,521 + +0.8
3,860,521 + -0.4
3,860,522 - -3.0
3,860,558 + +0.5
3,860,571 + -0.1
3,860,571 + +1.0
3,860,580 + +0.4
3,860,580 + -0.2
3,860,580 + -0.3
3,860,581 - +0.9
3,860,581 - +0.4
3,860,581 - -0.5
3,860,585 + -0.4
3,860,593 + -0.1
3,860,594 - +0.8
3,860,594 - -0.8
3,860,599 - -1.1
3,860,599 - -0.4
3,860,646 + -0.8
3,860,646 + +1.1
3,860,647 - +0.4
3,860,667 + -1.1
3,860,667 + +0.6
3,860,667 + -1.1
3,860,667 + +0.3
3,860,667 + +0.6
3,860,668 - -2.0
3,860,688 + +0.8
3,860,714 + +0.6
3,860,754 + +0.3

Or see this region's nucleotide sequence