Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36110

Experiment: R2A with nitrate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36100 and RR42_RS36105 are separated by 167 nucleotidesRR42_RS36105 and RR42_RS36110 are separated by 202 nucleotidesRR42_RS36110 and RR42_RS36115 are separated by 209 nucleotidesRR42_RS36115 and RR42_RS36120 are separated by 165 nucleotides RR42_RS36100: RR42_RS36100 - surface antigen, at 3,549,351 to 3,550,028 _RS36100 RR42_RS36105: RR42_RS36105 - MarR family transcriptional regulator, at 3,550,196 to 3,550,648 _RS36105 RR42_RS36110: RR42_RS36110 - membrane protein, at 3,550,851 to 3,551,420 _RS36110 RR42_RS36115: RR42_RS36115 - hypothetical protein, at 3,551,630 to 3,551,908 _RS36115 RR42_RS36120: RR42_RS36120 - LysR family transcriptional regulator, at 3,552,074 to 3,553,003 _RS36120 Position (kb) 3550 3551 3552Strain fitness (log2 ratio) -2 -1 0 1 2at 3549.895 kb on + strand, within RR42_RS36100at 3549.895 kb on + strand, within RR42_RS36100at 3549.896 kb on - strand, within RR42_RS36100at 3549.913 kb on + strand, within RR42_RS36100at 3549.914 kb on - strand, within RR42_RS36100at 3549.931 kb on + strand, within RR42_RS36100at 3549.931 kb on + strand, within RR42_RS36100at 3549.943 kb on + strand, within RR42_RS36100at 3550.506 kb on + strand, within RR42_RS36105at 3550.507 kb on - strand, within RR42_RS36105at 3550.507 kb on - strand, within RR42_RS36105at 3550.648 kb on + strandat 3550.649 kb on - strandat 3550.693 kb on + strandat 3550.693 kb on + strandat 3550.693 kb on + strandat 3550.694 kb on - strandat 3550.694 kb on - strandat 3550.694 kb on - strandat 3550.694 kb on - strandat 3550.694 kb on - strandat 3550.694 kb on - strandat 3550.694 kb on - strandat 3550.695 kb on + strandat 3550.695 kb on + strandat 3550.696 kb on - strandat 3550.883 kb on + strandat 3550.884 kb on - strandat 3550.975 kb on + strand, within RR42_RS36110at 3550.976 kb on - strand, within RR42_RS36110at 3550.976 kb on - strand, within RR42_RS36110at 3551.128 kb on - strand, within RR42_RS36110at 3551.162 kb on + strand, within RR42_RS36110at 3551.162 kb on + strand, within RR42_RS36110at 3551.575 kb on + strandat 3551.575 kb on + strandat 3551.575 kb on + strandat 3551.575 kb on + strandat 3551.576 kb on - strandat 3551.576 kb on - strandat 3551.576 kb on - strandat 3551.576 kb on - strandat 3551.576 kb on - strandat 3551.576 kb on - strandat 3551.580 kb on + strandat 3551.849 kb on + strand, within RR42_RS36115at 3551.849 kb on + strand, within RR42_RS36115at 3551.849 kb on + strand, within RR42_RS36115at 3551.849 kb on + strand, within RR42_RS36115at 3551.849 kb on + strand, within RR42_RS36115at 3551.946 kb on + strandat 3551.946 kb on + strandat 3551.946 kb on + strandat 3551.946 kb on + strandat 3551.946 kb on + strandat 3551.947 kb on - strandat 3551.947 kb on - strandat 3551.951 kb on - strandat 3551.951 kb on - strandat 3551.951 kb on - strandat 3551.951 kb on - strandat 3551.958 kb on + strandat 3551.959 kb on - strandat 3551.968 kb on + strandat 3552.270 kb on + strand, within RR42_RS36120at 3552.271 kb on - strand, within RR42_RS36120

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 150 mM
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3,549,895 + RR42_RS36100 0.80 +0.2
3,549,895 + RR42_RS36100 0.80 -0.5
3,549,896 - RR42_RS36100 0.80 -0.9
3,549,913 + RR42_RS36100 0.83 -0.3
3,549,914 - RR42_RS36100 0.83 +0.2
3,549,931 + RR42_RS36100 0.86 +0.3
3,549,931 + RR42_RS36100 0.86 +1.8
3,549,943 + RR42_RS36100 0.87 +0.8
3,550,506 + RR42_RS36105 0.68 +0.2
3,550,507 - RR42_RS36105 0.69 -0.3
3,550,507 - RR42_RS36105 0.69 -0.6
3,550,648 + +0.8
3,550,649 - +0.4
3,550,693 + +0.2
3,550,693 + +0.1
3,550,693 + +0.5
3,550,694 - +0.3
3,550,694 - -0.3
3,550,694 - -0.3
3,550,694 - -0.2
3,550,694 - -1.6
3,550,694 - -0.3
3,550,694 - +0.3
3,550,695 + +0.2
3,550,695 + -0.4
3,550,696 - +0.1
3,550,883 + -0.8
3,550,884 - -0.5
3,550,975 + RR42_RS36110 0.22 -0.3
3,550,976 - RR42_RS36110 0.22 -1.5
3,550,976 - RR42_RS36110 0.22 -0.5
3,551,128 - RR42_RS36110 0.49 -1.0
3,551,162 + RR42_RS36110 0.55 -0.9
3,551,162 + RR42_RS36110 0.55 -1.8
3,551,575 + -0.1
3,551,575 + -0.6
3,551,575 + -1.1
3,551,575 + -0.3
3,551,576 - +0.3
3,551,576 - -0.1
3,551,576 - -0.4
3,551,576 - +0.3
3,551,576 - -0.4
3,551,576 - -0.0
3,551,580 + -0.3
3,551,849 + RR42_RS36115 0.78 -0.5
3,551,849 + RR42_RS36115 0.78 +0.2
3,551,849 + RR42_RS36115 0.78 -1.0
3,551,849 + RR42_RS36115 0.78 +0.8
3,551,849 + RR42_RS36115 0.78 -0.1
3,551,946 + -0.2
3,551,946 + -0.2
3,551,946 + -1.0
3,551,946 + +0.1
3,551,946 + -0.7
3,551,947 - -1.7
3,551,947 - +0.7
3,551,951 - -0.8
3,551,951 - -0.5
3,551,951 - +0.1
3,551,951 - +0.0
3,551,958 + +0.3
3,551,959 - -0.9
3,551,968 + -0.2
3,552,270 + RR42_RS36120 0.21 +0.2
3,552,271 - RR42_RS36120 0.21 +0.1

Or see this region's nucleotide sequence