Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30735

Experiment: R2A with nitrate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS30730 and RR42_RS30735 are separated by 501 nucleotidesRR42_RS30735 and RR42_RS30740 are separated by 141 nucleotidesRR42_RS30740 and RR42_RS30745 are separated by 252 nucleotides RR42_RS30730: RR42_RS30730 - hypothetical protein, at 2,271,144 to 2,272,472 _RS30730 RR42_RS30735: RR42_RS30735 - tRNA-Met, at 2,272,974 to 2,273,049 _RS30735 RR42_RS30740: RR42_RS30740 - hypothetical protein, at 2,273,191 to 2,273,403 _RS30740 RR42_RS30745: RR42_RS30745 - hypothetical protein, at 2,273,656 to 2,275,734 _RS30745 Position (kb) 2272 2273 2274Strain fitness (log2 ratio) -2 -1 0 1at 2272.138 kb on + strand, within RR42_RS30730at 2272.138 kb on + strand, within RR42_RS30730at 2272.139 kb on - strand, within RR42_RS30730at 2272.139 kb on - strand, within RR42_RS30730at 2272.182 kb on + strand, within RR42_RS30730at 2272.300 kb on - strand, within RR42_RS30730at 2272.324 kb on + strand, within RR42_RS30730at 2272.482 kb on + strandat 2272.482 kb on + strandat 2272.483 kb on - strandat 2272.483 kb on - strandat 2272.483 kb on - strandat 2272.652 kb on + strandat 2272.709 kb on + strandat 2272.741 kb on + strandat 2272.741 kb on + strandat 2272.778 kb on + strandat 2272.778 kb on + strandat 2272.778 kb on + strandat 2272.779 kb on - strandat 2272.779 kb on - strandat 2272.779 kb on - strandat 2273.013 kb on + strand, within RR42_RS30735at 2273.058 kb on + strandat 2273.060 kb on + strandat 2273.060 kb on + strandat 2273.060 kb on + strandat 2273.061 kb on - strandat 2273.061 kb on - strandat 2273.089 kb on + strandat 2273.090 kb on - strandat 2273.155 kb on + strandat 2273.155 kb on + strandat 2273.156 kb on - strandat 2273.156 kb on - strandat 2273.156 kb on - strandat 2273.293 kb on + strand, within RR42_RS30740at 2273.294 kb on - strand, within RR42_RS30740at 2273.368 kb on + strand, within RR42_RS30740at 2273.368 kb on + strand, within RR42_RS30740at 2273.368 kb on + strand, within RR42_RS30740at 2273.369 kb on - strand, within RR42_RS30740at 2273.369 kb on - strand, within RR42_RS30740at 2273.369 kb on - strand, within RR42_RS30740at 2273.369 kb on - strand, within RR42_RS30740at 2273.369 kb on - strand, within RR42_RS30740at 2273.372 kb on + strand, within RR42_RS30740at 2273.372 kb on + strand, within RR42_RS30740at 2273.373 kb on - strand, within RR42_RS30740at 2273.373 kb on - strand, within RR42_RS30740at 2273.373 kb on - strand, within RR42_RS30740at 2273.373 kb on - strand, within RR42_RS30740at 2273.381 kb on + strand, within RR42_RS30740at 2273.382 kb on - strandat 2273.453 kb on + strandat 2273.454 kb on - strandat 2273.454 kb on - strandat 2273.454 kb on - strandat 2273.569 kb on - strandat 2273.569 kb on - strandat 2273.582 kb on + strandat 2273.582 kb on + strandat 2273.582 kb on + strandat 2273.625 kb on + strandat 2273.625 kb on + strandat 2273.626 kb on - strandat 2273.626 kb on - strandat 2273.626 kb on - strandat 2273.630 kb on - strandat 2273.635 kb on + strandat 2273.635 kb on + strandat 2273.635 kb on + strandat 2273.638 kb on + strandat 2273.639 kb on - strandat 2273.661 kb on + strandat 2273.662 kb on - strandat 2273.664 kb on + strandat 2273.665 kb on - strandat 2273.665 kb on - strandat 2273.738 kb on + strandat 2273.739 kb on - strandat 2273.798 kb on + strandat 2273.832 kb on + strandat 2273.857 kb on + strandat 2273.857 kb on + strandat 2273.858 kb on - strandat 2273.989 kb on + strand, within RR42_RS30745at 2273.990 kb on - strand, within RR42_RS30745at 2273.990 kb on - strand, within RR42_RS30745at 2273.990 kb on - strand, within RR42_RS30745at 2273.990 kb on - strand, within RR42_RS30745at 2273.990 kb on - strand, within RR42_RS30745

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 150 mM
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2,272,138 + RR42_RS30730 0.75 -0.2
2,272,138 + RR42_RS30730 0.75 -0.1
2,272,139 - RR42_RS30730 0.75 +0.1
2,272,139 - RR42_RS30730 0.75 +0.4
2,272,182 + RR42_RS30730 0.78 -0.1
2,272,300 - RR42_RS30730 0.87 +0.7
2,272,324 + RR42_RS30730 0.89 +0.2
2,272,482 + -0.3
2,272,482 + -0.4
2,272,483 - +0.2
2,272,483 - +0.3
2,272,483 - +0.2
2,272,652 + -0.7
2,272,709 + +0.3
2,272,741 + -1.0
2,272,741 + -0.3
2,272,778 + -0.4
2,272,778 + -0.3
2,272,778 + +0.3
2,272,779 - -0.0
2,272,779 - -1.4
2,272,779 - +1.4
2,273,013 + RR42_RS30735 0.51 -1.2
2,273,058 + -0.0
2,273,060 + -1.0
2,273,060 + -0.2
2,273,060 + +0.6
2,273,061 - +1.1
2,273,061 - -0.2
2,273,089 + +0.7
2,273,090 - -0.7
2,273,155 + +0.3
2,273,155 + -0.1
2,273,156 - -0.9
2,273,156 - +0.6
2,273,156 - -0.5
2,273,293 + RR42_RS30740 0.48 +0.4
2,273,294 - RR42_RS30740 0.48 -0.7
2,273,368 + RR42_RS30740 0.83 -0.4
2,273,368 + RR42_RS30740 0.83 +0.1
2,273,368 + RR42_RS30740 0.83 -1.2
2,273,369 - RR42_RS30740 0.84 -0.4
2,273,369 - RR42_RS30740 0.84 -0.3
2,273,369 - RR42_RS30740 0.84 -0.4
2,273,369 - RR42_RS30740 0.84 -0.3
2,273,369 - RR42_RS30740 0.84 +0.1
2,273,372 + RR42_RS30740 0.85 +0.1
2,273,372 + RR42_RS30740 0.85 -1.2
2,273,373 - RR42_RS30740 0.85 -0.4
2,273,373 - RR42_RS30740 0.85 +1.3
2,273,373 - RR42_RS30740 0.85 +0.0
2,273,373 - RR42_RS30740 0.85 -0.4
2,273,381 + RR42_RS30740 0.89 +0.6
2,273,382 - -0.4
2,273,453 + -0.4
2,273,454 - -0.3
2,273,454 - +1.0
2,273,454 - -0.3
2,273,569 - -0.1
2,273,569 - +0.4
2,273,582 + -0.6
2,273,582 + -0.5
2,273,582 + -1.8
2,273,625 + +0.2
2,273,625 + -0.9
2,273,626 - +0.6
2,273,626 - -0.4
2,273,626 - -1.4
2,273,630 - -0.4
2,273,635 + +0.5
2,273,635 + +0.6
2,273,635 + -0.2
2,273,638 + -0.1
2,273,639 - -0.8
2,273,661 + +0.2
2,273,662 - -0.7
2,273,664 + -1.4
2,273,665 - -2.2
2,273,665 - -0.1
2,273,738 + -0.5
2,273,739 - +0.4
2,273,798 + -1.2
2,273,832 + -0.3
2,273,857 + -0.2
2,273,857 + +0.2
2,273,858 - +0.1
2,273,989 + RR42_RS30745 0.16 +0.1
2,273,990 - RR42_RS30745 0.16 -1.1
2,273,990 - RR42_RS30745 0.16 -0.3
2,273,990 - RR42_RS30745 0.16 +0.9
2,273,990 - RR42_RS30745 0.16 +1.0
2,273,990 - RR42_RS30745 0.16 +0.5

Or see this region's nucleotide sequence