Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30025

Experiment: R2A with nitrate 150 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 150 mM
2,100,929	+		RR42_RS30015	0.59	+0.7
2,100,929	+		RR42_RS30015	0.59	+0.1
2,100,930	-		RR42_RS30015	0.59	-0.0
2,100,930	-		RR42_RS30015	0.59	+0.5
2,100,930	-		RR42_RS30015	0.59	+0.7
2,100,930	-		RR42_RS30015	0.59	+0.3
2,100,935	+		RR42_RS30015	0.60	+1.0
2,100,935	+		RR42_RS30015	0.60	+0.7
2,100,935	+		RR42_RS30015	0.60	+1.7
2,100,935	+		RR42_RS30015	0.60	+0.2
2,100,936	-		RR42_RS30015	0.60	+0.1
2,100,936	-		RR42_RS30015	0.60	-0.6
2,100,936	-		RR42_RS30015	0.60	-0.5
2,100,936	-		RR42_RS30015	0.60	+1.0
2,100,953	-		RR42_RS30015	0.61	-0.2
2,100,963	+		RR42_RS30015	0.62	+0.3
2,101,112	-		RR42_RS30015	0.74	+0.3
2,101,150	+		RR42_RS30015	0.77	+0.2
2,101,151	-		RR42_RS30015	0.78	-0.4
2,101,151	-		RR42_RS30015	0.78	+0.4
2,101,182	+		RR42_RS30015	0.80	+0.2
2,101,183	-		RR42_RS30015	0.80	-0.4
2,101,317	+				+1.3
2,101,317	+				+0.9
2,101,318	-				+0.1
2,101,321	+				+0.2
2,101,321	+				-0.3
2,101,322	-				+0.8
2,101,354	+				-0.1
2,101,355	-				+0.2
2,101,355	-				+0.6
2,101,367	+				-0.3
2,101,401	+				+0.1
2,101,401	+				+0.6
2,101,402	-				+0.2
2,101,440	-				+0.3
2,101,554	+		RR42_RS30020	0.58	-1.5
2,101,554	+		RR42_RS30020	0.58	+0.2
2,101,560	+		RR42_RS30020	0.61	+0.6
2,101,560	+		RR42_RS30020	0.61	+0.3
2,101,560	+		RR42_RS30020	0.61	-0.9
2,101,560	+		RR42_RS30020	0.61	-0.2
2,101,561	-		RR42_RS30020	0.62	+0.2
2,101,602	+		RR42_RS30020	0.83	-0.1
2,101,602	+		RR42_RS30020	0.83	+0.8
2,101,602	+		RR42_RS30020	0.83	-0.9
2,101,603	-		RR42_RS30020	0.84	-0.2
2,101,603	-		RR42_RS30020	0.84	+0.5
2,101,603	-		RR42_RS30020	0.84	-0.4
2,101,603	-		RR42_RS30020	0.84	-0.9
2,101,679	+				+0.2
2,101,689	+				-0.4
2,101,694	+				-0.0
2,101,706	+				-0.4
2,101,707	-				-0.1
2,101,707	-				+0.3
2,101,707	-				+0.4
2,101,707	-				+0.2
2,101,707	-				-1.7
2,101,726	+				+0.5
2,101,726	+				+1.0
2,101,726	+				+0.7
2,101,726	+				+0.1
2,101,727	-				+0.4
2,101,727	-				+0.1
2,101,727	-				-0.5
2,101,727	-				+0.6
2,101,729	-				+0.2
2,101,778	+				-1.1
2,101,778	+				-0.4
2,101,818	+				-0.2
2,101,818	+				-0.5
2,101,835	+				-0.7
2,101,835	+				+0.1
2,101,836	-				+0.1
2,101,913	+				+0.5
2,101,969	+				-0.7
2,101,969	+				-0.3
2,101,969	+				-0.1
2,101,970	-				-0.7
2,101,970	-				+0.1
2,101,970	-				-0.2
2,101,980	+				-3.9
2,101,981	-				+0.2
2,101,981	-				-1.2
2,102,034	+		RR42_RS30025	0.13	+0.2
2,102,078	+		RR42_RS30025	0.16	+0.2
2,102,079	-		RR42_RS30025	0.16	-0.3
2,102,090	-		RR42_RS30025	0.17	-0.4
2,102,090	-		RR42_RS30025	0.17	-0.4
2,102,090	-		RR42_RS30025	0.17	-0.6
2,102,237	+		RR42_RS30025	0.27	-1.9
2,102,464	+		RR42_RS30025	0.42	-0.3
2,102,480	+		RR42_RS30025	0.43	+0.0
2,102,481	-		RR42_RS30025	0.43	-0.2
2,102,608	+		RR42_RS30025	0.51	+0.1
2,102,608	+		RR42_RS30025	0.51	-2.3
2,102,608	+		RR42_RS30025	0.51	-0.3
2,102,609	-		RR42_RS30025	0.52	-0.8
2,102,609	-		RR42_RS30025	0.52	+0.1
2,102,609	-		RR42_RS30025	0.52	-0.3
2,102,680	+		RR42_RS30025	0.56	+0.0
2,102,686	-		RR42_RS30025	0.57	-1.1
2,102,686	-		RR42_RS30025	0.57	-0.2
2,102,736	+		RR42_RS30025	0.60	+0.6
2,102,736	+		RR42_RS30025	0.60	+0.2
2,102,737	-		RR42_RS30025	0.60	+0.1
2,102,737	-		RR42_RS30025	0.60	-0.8
2,102,737	-		RR42_RS30025	0.60	+0.7
2,102,788	+		RR42_RS30025	0.63	-0.3
2,102,788	+		RR42_RS30025	0.63	-1.1
2,102,788	+		RR42_RS30025	0.63	+0.8
2,102,789	-		RR42_RS30025	0.63	-0.9
2,102,801	-		RR42_RS30025	0.64	+1.4
2,102,882	+		RR42_RS30025	0.70	-0.5
2,102,882	+		RR42_RS30025	0.70	+0.3
2,103,014	+		RR42_RS30025	0.78	+0.1
2,103,036	+		RR42_RS30025	0.80	+0.9
2,103,038	+		RR42_RS30025	0.80	-0.4
2,103,038	+		RR42_RS30025	0.80	+0.5
2,103,038	+		RR42_RS30025	0.80	-0.5
2,103,038	+		RR42_RS30025	0.80	+0.8
2,103,071	-		RR42_RS30025	0.82	-0.4
2,103,071	-		RR42_RS30025	0.82	-0.3
2,103,073	+		RR42_RS30025	0.82	-0.1
2,103,167	+		RR42_RS30025	0.88	-1.1
2,103,167	+		RR42_RS30025	0.88	+1.0
2,103,167	+		RR42_RS30025	0.88	-0.3
2,103,168	-		RR42_RS30025	0.88	+0.8
2,103,168	-		RR42_RS30025	0.88	+1.6
2,103,201	-				+0.3
2,103,207	-				-0.1
2,103,227	+				+0.8
2,103,228	-				-0.0
2,103,228	-				-0.3
2,103,257	+				+0.1
2,103,258	-				+0.5
2,103,276	+				-0.2
2,103,276	+				+0.3
2,103,276	+				-0.5
2,103,277	-				+0.3
2,103,277	-				+1.1
2,103,277	-				+0.9
2,103,277	-				+1.2
2,103,277	-				-0.3
2,103,283	-				-0.9
2,103,283	-				+0.5
2,103,283	-				+0.2
2,103,283	-				+0.0
2,103,283	-				-0.3
2,103,313	-				+0.1
2,103,340	-				+0.1
2,103,397	+				-1.6
2,103,397	+				+0.3
2,103,397	+				-0.8
2,103,397	+				+0.2
2,103,397	+				+0.1
2,103,397	+				-0.7
2,103,397	+				+0.3
2,103,398	-				+0.6
2,103,398	-				+0.9
2,103,398	-				+0.2
2,103,398	-				-0.0
2,103,398	-				+0.3
2,103,398	-				-0.8
2,103,398	-				+0.1
2,103,469	+				-1.3
2,103,555	+				+0.0
2,103,556	-				+0.5
2,103,562	+				-3.4
2,103,564	-				-0.3
2,103,607	+				+0.4
2,103,607	+				-0.7
2,103,632	-				-0.6
2,103,632	-				+0.1
2,103,632	-				-0.1
2,103,632	-				-0.1
2,103,677	-				-0.4
2,103,683	+				-0.1
2,103,684	-				+0.5
2,103,684	-				-0.3
2,103,729	+				+1.4
2,103,744	+				-1.3
2,103,744	+				+1.5
2,103,756	+				-0.7
2,103,756	+				+0.9
2,103,757	-				-0.2
2,103,757	-				+0.4
2,103,848	+				+0.0
2,103,892	+				+0.0
2,103,949	+				-0.2
2,103,949	+				+0.5
2,103,950	-				+0.5
2,103,950	-				+0.0
2,104,108	+				-0.3
2,104,108	+				+0.7
2,104,109	-				-1.4
2,104,149	+				+0.6
2,104,321	+				-1.7
2,104,322	-				-1.6
2,104,324	+				-0.4
2,104,324	+				+0.6
2,104,325	-				-1.1
2,104,325	-				+0.5
2,104,325	-				+0.2