Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27645

Experiment: R2A with nitrate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27640 and RR42_RS27645 are separated by 89 nucleotidesRR42_RS27645 and RR42_RS27650 are separated by 75 nucleotides RR42_RS27640: RR42_RS27640 - CDP-diacylglycerol pyrophosphatase, at 1,565,000 to 1,565,776 _RS27640 RR42_RS27645: RR42_RS27645 - hypothetical protein, at 1,565,866 to 1,566,120 _RS27645 RR42_RS27650: RR42_RS27650 - phosphate-binding protein, at 1,566,196 to 1,567,179 _RS27650 Position (kb) 1565 1566 1567Strain fitness (log2 ratio) -1 0 1at 1565.013 kb on + strandat 1565.013 kb on + strandat 1565.014 kb on - strandat 1565.175 kb on - strand, within RR42_RS27640at 1565.395 kb on + strand, within RR42_RS27640at 1565.455 kb on + strand, within RR42_RS27640at 1565.499 kb on + strand, within RR42_RS27640at 1565.499 kb on + strand, within RR42_RS27640at 1565.618 kb on + strand, within RR42_RS27640at 1565.618 kb on + strand, within RR42_RS27640at 1565.619 kb on - strand, within RR42_RS27640at 1565.619 kb on - strand, within RR42_RS27640at 1565.619 kb on - strand, within RR42_RS27640at 1565.619 kb on - strand, within RR42_RS27640at 1565.619 kb on - strand, within RR42_RS27640at 1565.775 kb on - strandat 1565.827 kb on + strandat 1565.876 kb on - strandat 1565.876 kb on - strandat 1566.053 kb on - strand, within RR42_RS27645at 1566.067 kb on + strand, within RR42_RS27645at 1566.068 kb on - strand, within RR42_RS27645at 1566.260 kb on + strandat 1566.261 kb on - strandat 1566.425 kb on + strand, within RR42_RS27650at 1566.426 kb on - strand, within RR42_RS27650at 1566.551 kb on + strand, within RR42_RS27650at 1566.551 kb on + strand, within RR42_RS27650at 1566.566 kb on + strand, within RR42_RS27650at 1566.567 kb on - strand, within RR42_RS27650at 1566.596 kb on + strand, within RR42_RS27650at 1566.596 kb on + strand, within RR42_RS27650at 1566.597 kb on - strand, within RR42_RS27650at 1566.701 kb on + strand, within RR42_RS27650at 1566.833 kb on + strand, within RR42_RS27650at 1566.834 kb on - strand, within RR42_RS27650at 1566.834 kb on - strand, within RR42_RS27650at 1566.834 kb on - strand, within RR42_RS27650at 1566.838 kb on - strand, within RR42_RS27650at 1567.046 kb on + strand, within RR42_RS27650at 1567.047 kb on - strand, within RR42_RS27650at 1567.074 kb on - strand, within RR42_RS27650at 1567.074 kb on - strand, within RR42_RS27650at 1567.076 kb on + strand, within RR42_RS27650at 1567.076 kb on + strand, within RR42_RS27650at 1567.076 kb on + strand, within RR42_RS27650at 1567.077 kb on - strand, within RR42_RS27650at 1567.077 kb on - strand, within RR42_RS27650at 1567.106 kb on + strandat 1567.106 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 150 mM
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1,565,013 + -0.9
1,565,013 + -0.1
1,565,014 - +0.5
1,565,175 - RR42_RS27640 0.23 +0.3
1,565,395 + RR42_RS27640 0.51 -0.1
1,565,455 + RR42_RS27640 0.59 -0.2
1,565,499 + RR42_RS27640 0.64 -1.0
1,565,499 + RR42_RS27640 0.64 -0.4
1,565,618 + RR42_RS27640 0.80 -0.3
1,565,618 + RR42_RS27640 0.80 +0.2
1,565,619 - RR42_RS27640 0.80 -0.5
1,565,619 - RR42_RS27640 0.80 -0.0
1,565,619 - RR42_RS27640 0.80 +0.2
1,565,619 - RR42_RS27640 0.80 -1.4
1,565,619 - RR42_RS27640 0.80 -0.1
1,565,775 - +0.4
1,565,827 + +0.4
1,565,876 - -0.4
1,565,876 - +0.1
1,566,053 - RR42_RS27645 0.73 -0.4
1,566,067 + RR42_RS27645 0.79 -1.4
1,566,068 - RR42_RS27645 0.79 +1.1
1,566,260 + -0.1
1,566,261 - -0.8
1,566,425 + RR42_RS27650 0.23 +0.3
1,566,426 - RR42_RS27650 0.23 -0.0
1,566,551 + RR42_RS27650 0.36 -0.1
1,566,551 + RR42_RS27650 0.36 +1.3
1,566,566 + RR42_RS27650 0.38 +0.3
1,566,567 - RR42_RS27650 0.38 +0.9
1,566,596 + RR42_RS27650 0.41 -0.4
1,566,596 + RR42_RS27650 0.41 +0.4
1,566,597 - RR42_RS27650 0.41 +0.2
1,566,701 + RR42_RS27650 0.51 +0.5
1,566,833 + RR42_RS27650 0.65 +1.7
1,566,834 - RR42_RS27650 0.65 -0.0
1,566,834 - RR42_RS27650 0.65 -0.3
1,566,834 - RR42_RS27650 0.65 +0.3
1,566,838 - RR42_RS27650 0.65 +0.5
1,567,046 + RR42_RS27650 0.86 -0.7
1,567,047 - RR42_RS27650 0.86 +0.1
1,567,074 - RR42_RS27650 0.89 -0.8
1,567,074 - RR42_RS27650 0.89 +0.6
1,567,076 + RR42_RS27650 0.89 -1.4
1,567,076 + RR42_RS27650 0.89 +0.2
1,567,076 + RR42_RS27650 0.89 +1.1
1,567,077 - RR42_RS27650 0.90 -0.4
1,567,077 - RR42_RS27650 0.90 +0.1
1,567,106 + -0.1
1,567,106 + +0.4

Or see this region's nucleotide sequence