Experiment: R2A with nitrate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27590 and RR42_RS27595 are separated by 288 nucleotides RR42_RS27595 and RR42_RS27600 are separated by 460 nucleotides RR42_RS27600 and RR42_RS27605 are separated by 205 nucleotides
RR42_RS27590: RR42_RS27590 - amino acid transporter, at 1,555,266 to 1,555,910
_RS27590
RR42_RS27595: RR42_RS27595 - hypothetical protein, at 1,556,199 to 1,556,441
_RS27595
RR42_RS27600: RR42_RS27600 - hypothetical protein, at 1,556,902 to 1,557,198
_RS27600
RR42_RS27605: RR42_RS27605 - hypothetical protein, at 1,557,404 to 1,558,237
_RS27605
Position (kb) 1556
1557
1558 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1555.952 kb on + strand at 1555.952 kb on + strand at 1555.952 kb on + strand at 1555.952 kb on + strand at 1555.953 kb on - strand at 1555.953 kb on - strand at 1555.953 kb on - strand at 1556.079 kb on + strand at 1556.092 kb on - strand at 1556.105 kb on - strand at 1556.163 kb on + strand at 1556.248 kb on + strand, within RR42_RS27595 at 1556.249 kb on - strand, within RR42_RS27595 at 1556.249 kb on - strand, within RR42_RS27595 at 1556.289 kb on + strand, within RR42_RS27595 at 1556.289 kb on + strand, within RR42_RS27595 at 1556.290 kb on - strand, within RR42_RS27595 at 1556.440 kb on - strand at 1556.465 kb on + strand at 1556.507 kb on + strand at 1556.508 kb on - strand at 1556.540 kb on - strand at 1556.544 kb on + strand at 1556.545 kb on - strand at 1556.545 kb on - strand at 1556.545 kb on - strand at 1556.558 kb on - strand at 1556.559 kb on + strand at 1556.728 kb on - strand at 1556.757 kb on + strand at 1556.757 kb on + strand at 1556.907 kb on + strand at 1556.907 kb on + strand at 1556.907 kb on + strand at 1556.907 kb on + strand at 1556.907 kb on + strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1556.908 kb on - strand at 1556.911 kb on + strand at 1556.912 kb on - strand at 1556.920 kb on + strand at 1556.920 kb on + strand at 1556.921 kb on - strand at 1556.921 kb on - strand at 1556.921 kb on - strand at 1557.263 kb on + strand at 1557.357 kb on + strand at 1557.357 kb on + strand at 1557.357 kb on + strand at 1557.417 kb on + strand at 1557.417 kb on + strand at 1557.417 kb on + strand at 1557.490 kb on + strand, within RR42_RS27605 at 1557.491 kb on - strand, within RR42_RS27605 at 1557.623 kb on + strand, within RR42_RS27605 at 1557.635 kb on + strand, within RR42_RS27605 at 1557.636 kb on - strand, within RR42_RS27605 at 1558.192 kb on + strand at 1558.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrate 150 mM remove 1,555,952 + +1.2 1,555,952 + -0.5 1,555,952 + +2.0 1,555,952 + +0.1 1,555,953 - -1.2 1,555,953 - +0.6 1,555,953 - +0.3 1,556,079 + -0.5 1,556,092 - +0.1 1,556,105 - +0.3 1,556,163 + +1.1 1,556,248 + RR42_RS27595 0.20 -1.8 1,556,249 - RR42_RS27595 0.21 -0.5 1,556,249 - RR42_RS27595 0.21 -0.4 1,556,289 + RR42_RS27595 0.37 -1.4 1,556,289 + RR42_RS27595 0.37 -0.5 1,556,290 - RR42_RS27595 0.37 -0.1 1,556,440 - +0.2 1,556,465 + -0.1 1,556,507 + +0.6 1,556,508 - +0.7 1,556,540 - +0.0 1,556,544 + -2.2 1,556,545 - -0.9 1,556,545 - -0.6 1,556,545 - -0.6 1,556,558 - +0.4 1,556,559 + +1.3 1,556,728 - -0.2 1,556,757 + +0.3 1,556,757 + +0.4 1,556,907 + +0.1 1,556,907 + +0.1 1,556,907 + -0.1 1,556,907 + +0.1 1,556,907 + +0.7 1,556,908 - -0.9 1,556,908 - +0.7 1,556,908 - -1.1 1,556,908 - -0.0 1,556,908 - -0.2 1,556,908 - -0.4 1,556,911 + -0.2 1,556,912 - -1.9 1,556,920 + -0.2 1,556,920 + -0.0 1,556,921 - -2.2 1,556,921 - -0.7 1,556,921 - +0.4 1,557,263 + +0.6 1,557,357 + +0.0 1,557,357 + +0.2 1,557,357 + +0.7 1,557,417 + +0.4 1,557,417 + +0.8 1,557,417 + -0.1 1,557,490 + RR42_RS27605 0.10 -0.5 1,557,491 - RR42_RS27605 0.10 -3.2 1,557,623 + RR42_RS27605 0.26 +0.4 1,557,635 + RR42_RS27605 0.28 +0.2 1,557,636 - RR42_RS27605 0.28 +0.0 1,558,192 + -0.3 1,558,193 - -0.0
Or see this region's nucleotide sequence