Experiment: R2A with nitrate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21645 and RR42_RS21650 are separated by 43 nucleotides RR42_RS21650 and RR42_RS21655 are separated by 162 nucleotides RR42_RS21655 and RR42_RS21660 are separated by 7 nucleotides RR42_RS21660 and RR42_RS21665 are separated by 106 nucleotides
RR42_RS21645: RR42_RS21645 - N-carbamoylsarcosine amidase, at 185,451 to 186,092
_RS21645
RR42_RS21650: RR42_RS21650 - TetR family transcriptional regulator, at 186,136 to 186,873
_RS21650
RR42_RS21655: RR42_RS21655 - aldehyde dehydrogenase, at 187,036 to 189,300
_RS21655
RR42_RS21660: RR42_RS21660 - MarR family transcriptional regulator, at 189,308 to 189,820
_RS21660
RR42_RS21665: RR42_RS21665 - cobalt transporter, at 189,927 to 190,907
_RS21665
Position (kb) 187
188
189
190 Strain fitness (log2 ratio) -1
0
1 at 186.090 kb on + strand at 186.243 kb on + strand, within RR42_RS21650 at 186.318 kb on + strand, within RR42_RS21650 at 186.318 kb on + strand, within RR42_RS21650 at 186.319 kb on - strand, within RR42_RS21650 at 186.336 kb on - strand, within RR42_RS21650 at 186.366 kb on - strand, within RR42_RS21650 at 186.366 kb on - strand, within RR42_RS21650 at 186.449 kb on + strand, within RR42_RS21650 at 186.449 kb on + strand, within RR42_RS21650 at 186.548 kb on + strand, within RR42_RS21650 at 186.549 kb on - strand, within RR42_RS21650 at 186.551 kb on + strand, within RR42_RS21650 at 186.551 kb on + strand, within RR42_RS21650 at 186.552 kb on - strand, within RR42_RS21650 at 186.644 kb on + strand, within RR42_RS21650 at 186.644 kb on + strand, within RR42_RS21650 at 186.644 kb on + strand, within RR42_RS21650 at 186.692 kb on + strand, within RR42_RS21650 at 186.693 kb on - strand, within RR42_RS21650 at 186.693 kb on - strand, within RR42_RS21650 at 186.695 kb on + strand, within RR42_RS21650 at 186.698 kb on + strand, within RR42_RS21650 at 186.698 kb on + strand, within RR42_RS21650 at 186.698 kb on + strand, within RR42_RS21650 at 186.699 kb on - strand, within RR42_RS21650 at 186.699 kb on - strand, within RR42_RS21650 at 186.699 kb on - strand, within RR42_RS21650 at 186.699 kb on - strand, within RR42_RS21650 at 186.699 kb on - strand, within RR42_RS21650 at 186.873 kb on + strand at 186.873 kb on + strand at 186.873 kb on + strand at 186.874 kb on - strand at 186.883 kb on - strand at 186.883 kb on - strand at 186.886 kb on + strand at 186.886 kb on + strand at 186.887 kb on - strand at 186.910 kb on - strand at 186.910 kb on - strand at 186.911 kb on + strand at 187.531 kb on + strand, within RR42_RS21655 at 187.641 kb on + strand, within RR42_RS21655 at 187.729 kb on + strand, within RR42_RS21655 at 187.730 kb on - strand, within RR42_RS21655 at 188.066 kb on - strand, within RR42_RS21655 at 188.111 kb on - strand, within RR42_RS21655 at 188.239 kb on + strand, within RR42_RS21655 at 188.536 kb on + strand, within RR42_RS21655 at 188.542 kb on + strand, within RR42_RS21655 at 188.831 kb on - strand, within RR42_RS21655 at 188.841 kb on + strand, within RR42_RS21655 at 188.841 kb on + strand, within RR42_RS21655 at 189.309 kb on + strand at 189.966 kb on + strand at 189.968 kb on + strand at 189.969 kb on - strand at 189.969 kb on - strand at 189.969 kb on - strand at 189.969 kb on - strand at 190.146 kb on + strand, within RR42_RS21665 at 190.146 kb on + strand, within RR42_RS21665
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrate 150 mM remove 186,090 + +0.3 186,243 + RR42_RS21650 0.14 -0.0 186,318 + RR42_RS21650 0.25 +1.0 186,318 + RR42_RS21650 0.25 -0.6 186,319 - RR42_RS21650 0.25 +0.9 186,336 - RR42_RS21650 0.27 -0.2 186,366 - RR42_RS21650 0.31 -0.3 186,366 - RR42_RS21650 0.31 -0.8 186,449 + RR42_RS21650 0.42 +0.2 186,449 + RR42_RS21650 0.42 -1.6 186,548 + RR42_RS21650 0.56 +0.7 186,549 - RR42_RS21650 0.56 -0.8 186,551 + RR42_RS21650 0.56 -0.1 186,551 + RR42_RS21650 0.56 +0.1 186,552 - RR42_RS21650 0.56 +0.1 186,644 + RR42_RS21650 0.69 +0.4 186,644 + RR42_RS21650 0.69 -0.3 186,644 + RR42_RS21650 0.69 +0.7 186,692 + RR42_RS21650 0.75 +0.7 186,693 - RR42_RS21650 0.75 -0.4 186,693 - RR42_RS21650 0.75 +0.5 186,695 + RR42_RS21650 0.76 -0.0 186,698 + RR42_RS21650 0.76 +0.1 186,698 + RR42_RS21650 0.76 -1.2 186,698 + RR42_RS21650 0.76 -0.4 186,699 - RR42_RS21650 0.76 -0.9 186,699 - RR42_RS21650 0.76 +0.2 186,699 - RR42_RS21650 0.76 -0.5 186,699 - RR42_RS21650 0.76 -1.7 186,699 - RR42_RS21650 0.76 -0.3 186,873 + -1.6 186,873 + +1.1 186,873 + +0.5 186,874 - -0.6 186,883 - +0.5 186,883 - +0.3 186,886 + -0.0 186,886 + +0.1 186,887 - +0.1 186,910 - -0.3 186,910 - +0.2 186,911 + +1.7 187,531 + RR42_RS21655 0.22 +0.5 187,641 + RR42_RS21655 0.27 +0.1 187,729 + RR42_RS21655 0.31 -0.6 187,730 - RR42_RS21655 0.31 +0.1 188,066 - RR42_RS21655 0.45 -0.4 188,111 - RR42_RS21655 0.47 +0.6 188,239 + RR42_RS21655 0.53 +0.4 188,536 + RR42_RS21655 0.66 +0.6 188,542 + RR42_RS21655 0.66 +0.8 188,831 - RR42_RS21655 0.79 +0.9 188,841 + RR42_RS21655 0.80 +0.3 188,841 + RR42_RS21655 0.80 +0.9 189,309 + +0.3 189,966 + +1.4 189,968 + +0.8 189,969 - +0.7 189,969 - +0.1 189,969 - +0.1 189,969 - -0.9 190,146 + RR42_RS21665 0.22 +0.1 190,146 + RR42_RS21665 0.22 +1.0
Or see this region's nucleotide sequence