Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17435

Experiment: R2A with nitrate 150 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 150 mM
3,774,059	+		RR42_RS17430	0.60	+1.3
3,774,059	+		RR42_RS17430	0.60	-1.0
3,774,060	-		RR42_RS17430	0.61	+0.4
3,774,060	-		RR42_RS17430	0.61	+0.4
3,774,060	-		RR42_RS17430	0.61	+1.5
3,774,063	+		RR42_RS17430	0.61	+0.7
3,774,063	+		RR42_RS17430	0.61	+2.0
3,774,063	+		RR42_RS17430	0.61	+0.5
3,774,063	+		RR42_RS17430	0.61	+0.9
3,774,063	+		RR42_RS17430	0.61	+1.0
3,774,063	+		RR42_RS17430	0.61	+0.8
3,774,063	+		RR42_RS17430	0.61	+1.3
3,774,063	+		RR42_RS17430	0.61	+1.3
3,774,063	+		RR42_RS17430	0.61	+1.0
3,774,063	+		RR42_RS17430	0.61	+1.4
3,774,063	+		RR42_RS17430	0.61	+0.3
3,774,063	+		RR42_RS17430	0.61	+1.3
3,774,063	+		RR42_RS17430	0.61	+1.8
3,774,063	+		RR42_RS17430	0.61	+0.9
3,774,064	-		RR42_RS17430	0.61	-0.6
3,774,064	-		RR42_RS17430	0.61	+0.3
3,774,064	-		RR42_RS17430	0.61	-0.2
3,774,064	-		RR42_RS17430	0.61	+0.1
3,774,064	-		RR42_RS17430	0.61	-0.5
3,774,064	-		RR42_RS17430	0.61	+0.6
3,774,065	+		RR42_RS17430	0.61	+1.0
3,774,065	+		RR42_RS17430	0.61	-1.5
3,774,065	+		RR42_RS17430	0.61	+2.3
3,774,065	+		RR42_RS17430	0.61	+1.5
3,774,065	+		RR42_RS17430	0.61	+1.2
3,774,065	+		RR42_RS17430	0.61	-1.7
3,774,066	-		RR42_RS17430	0.61	-0.7
3,774,066	-		RR42_RS17430	0.61	-0.2
3,774,066	-		RR42_RS17430	0.61	-0.6
3,774,066	-		RR42_RS17430	0.61	+0.6
3,774,066	-		RR42_RS17430	0.61	+0.1
3,774,066	-		RR42_RS17430	0.61	-0.5
3,774,067	+		RR42_RS17430	0.61	+0.9
3,774,067	+		RR42_RS17430	0.61	+1.0
3,774,067	+		RR42_RS17430	0.61	+1.3
3,774,067	+		RR42_RS17430	0.61	+0.5
3,774,067	+		RR42_RS17430	0.61	+0.6
3,774,067	+		RR42_RS17430	0.61	+1.6
3,774,067	+		RR42_RS17430	0.61	+0.8
3,774,068	-		RR42_RS17430	0.61	-0.6
3,774,068	-		RR42_RS17430	0.61	-0.4
3,774,068	-		RR42_RS17430	0.61	-1.4
3,774,068	-		RR42_RS17430	0.61	-0.6
3,774,068	-		RR42_RS17430	0.61	-0.3
3,774,068	-		RR42_RS17430	0.61	+0.0
3,774,068	-		RR42_RS17430	0.61	-0.2
3,774,068	-		RR42_RS17430	0.61	+0.4
3,774,068	-		RR42_RS17430	0.61	-0.0
3,774,068	-		RR42_RS17430	0.61	-0.4
3,774,068	-		RR42_RS17430	0.61	+0.7
3,774,068	-		RR42_RS17430	0.61	-0.5
3,774,114	+		RR42_RS17430	0.65	+1.5
3,774,114	+		RR42_RS17430	0.65	+1.2
3,774,167	+		RR42_RS17430	0.69	-0.8
3,774,167	+		RR42_RS17430	0.69	+1.3
3,774,168	-		RR42_RS17430	0.69	+0.5
3,774,176	+		RR42_RS17430	0.69	+1.1
3,774,176	+		RR42_RS17430	0.69	+1.3
3,774,176	+		RR42_RS17430	0.69	+1.3
3,774,176	+		RR42_RS17430	0.69	+0.9
3,774,177	-		RR42_RS17430	0.69	-0.7
3,774,263	+		RR42_RS17430	0.76	+1.3
3,774,264	-		RR42_RS17430	0.76	-0.3
3,774,264	-		RR42_RS17430	0.76	+0.3
3,774,264	-		RR42_RS17430	0.76	+0.3
3,774,267	-		RR42_RS17430	0.76	+0.4
3,774,288	+		RR42_RS17430	0.78	+0.6
3,774,378	-		RR42_RS17430	0.84	+2.1
3,774,378	-		RR42_RS17430	0.84	+4.3
3,774,378	-		RR42_RS17430	0.84	+1.6
3,774,378	-		RR42_RS17430	0.84	-0.7
3,774,378	-		RR42_RS17430	0.84	+1.9
3,774,464	+				+0.8
3,774,465	-				+1.2
3,774,465	-				+0.9
3,774,504	+				+1.6
3,774,505	-				-0.6
3,774,506	+				+2.9
3,774,506	+				+0.2
3,774,507	-				+1.3
3,774,507	-				+1.3
3,774,507	-				-0.9
3,774,507	-				-0.1
3,774,507	-				-1.3
3,774,657	+				+1.0
3,774,657	+				+0.5
3,774,657	+				+0.4
3,774,657	+				+1.4
3,774,658	-				-0.3
3,774,658	-				-2.2
3,774,658	-				-0.1
3,774,658	-				+0.7
3,774,658	-				-1.6
3,774,694	+				+1.4
3,774,695	-				-0.3
3,774,695	-				-0.8
3,774,695	-				-0.1
3,774,695	-				-0.2
3,774,717	+				+0.9
3,774,718	-				-0.2
3,774,726	+				+0.1
3,774,785	+		RR42_RS17435	0.13	-0.2
3,774,825	+		RR42_RS17435	0.16	+0.9
3,774,825	+		RR42_RS17435	0.16	+0.5
3,774,862	-		RR42_RS17435	0.18	+0.2
3,774,862	-		RR42_RS17435	0.18	-0.3
3,774,862	-		RR42_RS17435	0.18	-0.0
3,774,882	+		RR42_RS17435	0.20	+1.0
3,774,882	+		RR42_RS17435	0.20	+0.6
3,774,883	-		RR42_RS17435	0.20	-0.5
3,775,023	+		RR42_RS17435	0.30	+0.3
3,775,024	-		RR42_RS17435	0.30	-0.7
3,775,024	-		RR42_RS17435	0.30	-0.7
3,775,024	-		RR42_RS17435	0.30	-0.8
3,775,067	+		RR42_RS17435	0.33	+1.0
3,775,067	+		RR42_RS17435	0.33	+0.5
3,775,067	+		RR42_RS17435	0.33	+0.5
3,775,068	-		RR42_RS17435	0.33	-0.4
3,775,068	-		RR42_RS17435	0.33	-0.5
3,775,068	-		RR42_RS17435	0.33	+0.2
3,775,252	+		RR42_RS17435	0.46	-0.2
3,775,252	+		RR42_RS17435	0.46	-1.4
3,775,253	-		RR42_RS17435	0.46	+0.3
3,775,269	+		RR42_RS17435	0.47	+2.2
3,775,320	+		RR42_RS17435	0.51	+1.2
3,775,321	-		RR42_RS17435	0.51	-0.4
3,775,321	-		RR42_RS17435	0.51	-0.4
3,775,407	+		RR42_RS17435	0.57	-0.6
3,775,408	-		RR42_RS17435	0.57	+0.4
3,775,473	+		RR42_RS17435	0.62	+0.8
3,775,473	+		RR42_RS17435	0.62	+0.7
3,775,474	-		RR42_RS17435	0.62	-0.4
3,775,512	+		RR42_RS17435	0.65	+1.3
3,775,512	+		RR42_RS17435	0.65	+0.4
3,775,513	-		RR42_RS17435	0.65	-0.6
3,775,633	-		RR42_RS17435	0.74	+0.6
3,775,646	-		RR42_RS17435	0.75	-1.3
3,775,813	-		RR42_RS17435	0.87	+1.7
3,775,879	-				-0.1
3,775,887	+				+0.9
3,775,924	+				-0.4
3,775,924	+				+1.3
3,775,924	+				+1.7
3,775,925	-				+0.9
3,775,967	-				+1.2
3,775,995	+				-0.1
3,775,995	+				+1.1
3,775,995	+				+1.7
3,775,996	-				-0.0
3,775,996	-				-0.9
3,776,002	+				+0.9
3,776,081	+				+0.4
3,776,097	+				+0.9
3,776,102	+				+1.1
3,776,110	+				+1.4
3,776,110	+				+1.5
3,776,111	-				-1.8
3,776,120	+				+0.3
3,776,120	+				+0.3
3,776,131	+				+1.0
3,776,131	+				+2.0
3,776,131	+				+1.3
3,776,131	+				+0.9
3,776,131	+				+0.3
3,776,131	+				+1.0
3,776,132	-				-0.2
3,776,132	-				-0.5
3,776,132	-				-0.6
3,776,188	-				-0.4
3,776,197	+				+0.2
3,776,197	+				+0.5
3,776,198	-				-1.5
3,776,233	+				+0.9
3,776,233	+				-0.0
3,776,241	+				+0.8
3,776,248	+				-0.0
3,776,256	+				+0.2
3,776,256	+				-0.1
3,776,257	-				-0.2
3,776,257	-				-0.5
3,776,280	+				+0.4
3,776,280	+				+0.7
3,776,280	+				+0.8
3,776,280	+				+1.0
3,776,280	+				+0.9
3,776,280	+				+0.4
3,776,280	+				+2.2
3,776,281	-				-0.4
3,776,281	-				+0.5
3,776,281	-				-0.1
3,776,307	+				-0.1
3,776,307	+				+1.3
3,776,308	-				-0.9
3,776,497	+				-0.4
3,776,508	+				+1.0
3,776,509	-				-0.5
3,776,566	+		RR42_RS17440	0.12	-0.1
3,776,567	-		RR42_RS17440	0.12	-1.1
3,776,761	+		RR42_RS17440	0.46	+0.0
3,776,761	+		RR42_RS17440	0.46	-0.1
3,776,761	+		RR42_RS17440	0.46	-0.4
3,776,761	+		RR42_RS17440	0.46	-0.4
3,776,761	+		RR42_RS17440	0.46	+1.7
3,776,761	+		RR42_RS17440	0.46	-0.3
3,776,761	+		RR42_RS17440	0.46	-2.3
3,776,761	+		RR42_RS17440	0.46	-0.3
3,776,761	+		RR42_RS17440	0.46	+1.0
3,776,762	-		RR42_RS17440	0.46	-1.0
3,776,762	-		RR42_RS17440	0.46	+0.9
3,776,762	-		RR42_RS17440	0.46	+0.4