Experiment: R2A with nitrate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03025 and RR42_RS03030 are separated by 89 nucleotides RR42_RS03030 and RR42_RS03035 overlap by 4 nucleotides RR42_RS03035 and RR42_RS03040 overlap by 4 nucleotides
RR42_RS03025: RR42_RS03025 - Inner membrane protein (FUSC-like) required for 4-hydroxybenzoate transport, together with NodT, MFP, and DUF1656 proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03030) <small>(from data)</small>, at 669,371 to 671,365
_RS03025
RR42_RS03030: RR42_RS03030 - required for 4-hydroxybenzoate transport, together with NodT, MFP, and FUSC proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03025) <small>(from data)</small>, at 671,455 to 671,664
_RS03030
RR42_RS03035: RR42_RS03035 - membrane protein, at 671,661 to 672,629
_RS03035
RR42_RS03040: RR42_RS03040 - Outer membrane protein (NodT-like) required for 4-hydroxybenzoate transport, together with FUSC, MFP, and DUF1656 proteins (RR42_RS03025, RR42_RS03035, and RR42_RS03030) <small>(from data)</small>, at 672,626 to 674,089
_RS03040
Position (kb) 671
672 Strain fitness (log2 ratio) -2
-1
0
1
2 at 670.668 kb on - strand, within RR42_RS03025 at 670.668 kb on - strand, within RR42_RS03025 at 670.714 kb on - strand, within RR42_RS03025 at 670.714 kb on - strand, within RR42_RS03025 at 670.733 kb on + strand, within RR42_RS03025 at 670.833 kb on - strand, within RR42_RS03025 at 671.213 kb on + strand at 671.216 kb on + strand at 671.217 kb on - strand at 671.217 kb on - strand at 671.217 kb on - strand at 671.476 kb on + strand, within RR42_RS03030 at 671.476 kb on + strand, within RR42_RS03030 at 671.476 kb on + strand, within RR42_RS03030 at 671.476 kb on + strand, within RR42_RS03030 at 671.477 kb on - strand, within RR42_RS03030 at 671.477 kb on - strand, within RR42_RS03030 at 671.609 kb on + strand, within RR42_RS03030 at 671.609 kb on + strand, within RR42_RS03030 at 671.610 kb on - strand, within RR42_RS03030 at 671.610 kb on - strand, within RR42_RS03030 at 671.610 kb on - strand, within RR42_RS03030 at 671.610 kb on - strand, within RR42_RS03030 at 671.611 kb on + strand, within RR42_RS03030 at 671.611 kb on + strand, within RR42_RS03030 at 671.611 kb on + strand, within RR42_RS03030 at 671.611 kb on + strand, within RR42_RS03030 at 671.611 kb on + strand, within RR42_RS03030 at 671.612 kb on - strand, within RR42_RS03030 at 671.612 kb on - strand, within RR42_RS03030 at 671.639 kb on - strand, within RR42_RS03030 at 671.639 kb on - strand, within RR42_RS03030 at 671.678 kb on + strand at 671.699 kb on + strand at 671.752 kb on - strand at 671.754 kb on + strand at 671.754 kb on + strand at 672.147 kb on + strand, within RR42_RS03035
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrate 150 mM remove 670,668 - RR42_RS03025 0.65 -0.7 670,668 - RR42_RS03025 0.65 +0.1 670,714 - RR42_RS03025 0.67 -0.2 670,714 - RR42_RS03025 0.67 -0.3 670,733 + RR42_RS03025 0.68 +0.9 670,833 - RR42_RS03025 0.73 -2.4 671,213 + -1.5 671,216 + -1.1 671,217 - -0.9 671,217 - +0.8 671,217 - -0.2 671,476 + RR42_RS03030 0.10 +0.2 671,476 + RR42_RS03030 0.10 +0.0 671,476 + RR42_RS03030 0.10 +0.9 671,476 + RR42_RS03030 0.10 +0.3 671,477 - RR42_RS03030 0.10 -0.6 671,477 - RR42_RS03030 0.10 +0.3 671,609 + RR42_RS03030 0.73 +0.0 671,609 + RR42_RS03030 0.73 -0.8 671,610 - RR42_RS03030 0.74 +0.0 671,610 - RR42_RS03030 0.74 +0.4 671,610 - RR42_RS03030 0.74 -0.7 671,610 - RR42_RS03030 0.74 +0.2 671,611 + RR42_RS03030 0.74 +0.4 671,611 + RR42_RS03030 0.74 -0.2 671,611 + RR42_RS03030 0.74 -0.9 671,611 + RR42_RS03030 0.74 +1.1 671,611 + RR42_RS03030 0.74 +0.0 671,612 - RR42_RS03030 0.75 -0.1 671,612 - RR42_RS03030 0.75 +0.7 671,639 - RR42_RS03030 0.88 +1.7 671,639 - RR42_RS03030 0.88 +2.0 671,678 + +0.7 671,699 + +0.5 671,752 - -0.2 671,754 + +0.3 671,754 + +0.4 672,147 + RR42_RS03035 0.50 +0.1
Or see this region's nucleotide sequence