Experiment: R2A with nitrate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02390 and RR42_RS02395 are separated by 52 nucleotides RR42_RS02395 and RR42_RS02400 are separated by 42 nucleotides RR42_RS02400 and RR42_RS02405 are separated by 76 nucleotides
RR42_RS02390: RR42_RS02390 - ABC transporter ATP-binding protein, at 538,203 to 540,086
_RS02390
RR42_RS02395: RR42_RS02395 - hypothetical protein, at 540,139 to 540,552
_RS02395
RR42_RS02400: RR42_RS02400 - ubiquinone biosynthesis methyltransferase UbiE, at 540,595 to 541,326
_RS02400
RR42_RS02405: RR42_RS02405 - membrane protein, at 541,403 to 542,404
_RS02405
Position (kb) 540
541 Strain fitness (log2 ratio) -1
0
1
2
3 at 539.139 kb on + strand, within RR42_RS02390 at 539.139 kb on + strand, within RR42_RS02390 at 539.232 kb on + strand, within RR42_RS02390 at 539.232 kb on + strand, within RR42_RS02390 at 539.232 kb on + strand, within RR42_RS02390 at 539.291 kb on + strand, within RR42_RS02390 at 539.292 kb on - strand, within RR42_RS02390 at 539.587 kb on + strand, within RR42_RS02390 at 539.588 kb on - strand, within RR42_RS02390 at 539.588 kb on - strand, within RR42_RS02390 at 539.634 kb on + strand, within RR42_RS02390 at 539.901 kb on + strand at 539.902 kb on - strand at 540.084 kb on + strand at 540.253 kb on + strand, within RR42_RS02395 at 540.367 kb on + strand, within RR42_RS02395 at 540.367 kb on + strand, within RR42_RS02395 at 540.367 kb on + strand, within RR42_RS02395 at 540.367 kb on + strand, within RR42_RS02395 at 540.402 kb on + strand, within RR42_RS02395 at 540.412 kb on + strand, within RR42_RS02395 at 540.470 kb on - strand, within RR42_RS02395 at 541.332 kb on + strand at 541.335 kb on - strand at 541.378 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrate 150 mM remove 539,139 + RR42_RS02390 0.50 +0.3 539,139 + RR42_RS02390 0.50 -0.6 539,232 + RR42_RS02390 0.55 -0.1 539,232 + RR42_RS02390 0.55 -0.6 539,232 + RR42_RS02390 0.55 +2.9 539,291 + RR42_RS02390 0.58 +1.1 539,292 - RR42_RS02390 0.58 +0.5 539,587 + RR42_RS02390 0.73 -0.0 539,588 - RR42_RS02390 0.74 +0.1 539,588 - RR42_RS02390 0.74 +0.1 539,634 + RR42_RS02390 0.76 +0.4 539,901 + +2.2 539,902 - +0.3 540,084 + -0.8 540,253 + RR42_RS02395 0.28 +0.1 540,367 + RR42_RS02395 0.55 -0.8 540,367 + RR42_RS02395 0.55 +0.4 540,367 + RR42_RS02395 0.55 -1.5 540,367 + RR42_RS02395 0.55 -0.2 540,402 + RR42_RS02395 0.64 +0.1 540,412 + RR42_RS02395 0.66 -0.0 540,470 - RR42_RS02395 0.80 -0.3 541,332 + +0.7 541,335 - -0.2 541,378 + -0.6
Or see this region's nucleotide sequence